Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610 |
| fragaria_vesca | FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 |
| malus_domestica | MD04G1203700.v1.1 MD12G1217500.v1.1 |
| prunus_persica | Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 |
| pyrus_communis | pycom04g18020 pycom12g20300 |
| rosa_chinensis | RchiOBHm_Chr3g0455181 |
| rosa_laevigata | RLG00000025380 |
| rosa_multiflora | Rmu_sc0002169.1_g000028 |
| rosa_roxburghii | Rroxscaffold_6G00424500 |
| rosa_rugosa | Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500 |
| rosa_samantha | Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200 |
| rosa_wichuraiana | Rw3G005110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 248 |
| Acc65I | GGTACC | 1 cut(s) | 1388 |
| AccB1I | GGYRCC | 1 cut(s) | 1388 |
| AccI | GTMKAC | 2 cut(s) | 1472, 1780 |
| AccII | CGCG | 2 cut(s) | 20, 3451 |
| AccIII | TCCGGA | 1 cut(s) | 91 |
| AciI | CCGC | 7 cut(s) | 64, 226, 428, 1277, 1728, 3108, 3449 |
| AclI | AACGTT | 1 cut(s) | 1805 |
| AclWI | GGATC | 6 cut(s) | 1243, 1428, 1684, 1729, 3025, 3254 |
| AcoI | YGGCCR | 1 cut(s) | 2872 |
| AcsI | RAATTY | 5 cut(s) | 1286, 2351, 2482, 2926, 3483 |
| AcuI | CTGAAG | 4 cut(s) | 167, 831, 1065, 2868 |
| AcyI | GRCGYC | 2 cut(s) | 575, 3095 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 815, 1413, 1897, 2342, 2513 |
| AjiI | CACGTC | 1 cut(s) | 3378 |
| AjnI | CCWGG | 3 cut(s) | 814, 2650, 2874 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3378, 3410 |
| Alw21I | GWGCWC | 8 cut(s) | 794, 1888, 1949, 2112, 2295, 2701, 3339, 3383 |
| Alw26I | GTCTC | 8 cut(s) | 469, 657, 897, 1209, 1450, 2038, 2410, 3204 |
| Alw44I | GTGCAC | 2 cut(s) | 1945, 3379 |
| AlwI | GGATC | 6 cut(s) | 1243, 1428, 1684, 1729, 3025, 3254 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 326, 1468, 1709 |
| Ama87I | CYCGRG | 2 cut(s) | 579, 2980 |
| Aor13HI | TCCGGA | 1 cut(s) | 91 |
| AoxI | GGCC | 6 cut(s) | 33, 334, 2492, 2872, 2977, 3226 |
| ApaLI | GTGCAC | 2 cut(s) | 1945, 3379 |
| ApeKI | GCWGC | 5 cut(s) | 236, 239, 692, 3077, 3295 |
| ApoI | RAATTY | 5 cut(s) | 1286, 2351, 2482, 2926, 3483 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 694, 726 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 322, 2101 |
| Asp718I | GGTACC | 1 cut(s) | 1388 |
| AspLEI | GCGC | 5 cut(s) | 249, 893, 1349, 1970, 3453 |
| AspS9I | GGNCC | 4 cut(s) | 34, 2492, 2978, 3226 |
| AsuHPI | GGTGA | 4 cut(s) | 557, 970, 1595, 2536 |
| AsuII | TTCGAA | 1 cut(s) | 953 |
| AvaI | CYCGRG | 2 cut(s) | 579, 2980 |
| BaeGI | GKGCMC | 3 cut(s) | 1949, 2629, 3383 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3362, 3395 |
| BalI | TGGCCA | 1 cut(s) | 2874 |
| BanI | GGYRCC | 1 cut(s) | 1388 |
| BanII | GRGCYC | 4 cut(s) | 794, 2701, 2722, 3339 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2676, 2708 |
| BauI | CACGAG | 3 cut(s) | 555, 825, 2052 |
| BbsI | GAAGAC | 3 cut(s) | 763, 864, 1497 |
| Bbv12I | GWGCWC | 8 cut(s) | 794, 1888, 1949, 2112, 2295, 2701, 3339, 3383 |
| BbvI | GCAGC | 5 cut(s) | 223, 226, 704, 3064, 3282 |
| BceAI | ACGGC | 1 cut(s) | 3389 |
| BciT130I | CCWGG | 3 cut(s) | 816, 2652, 2876 |
| BciVI | GTATCC | 1 cut(s) | 8 |
| BclI | TGATCA | 1 cut(s) | 2302 |
| BcoDI | GTCTC | 8 cut(s) | 469, 657, 897, 1209, 1450, 2038, 2410, 3204 |
| BfaI | CTAG | 6 cut(s) | 459, 1065, 2535, 3021, 3143, 3180 |
| BfmI | CTRYAG | 3 cut(s) | 161, 240, 327 |
| BfoI | RGCGCY | 1 cut(s) | 894 |
| BfuI | GTATCC | 1 cut(s) | 8 |
| BglII | AGATCT | 1 cut(s) | 1905 |
| BisI | GCNGC | 5 cut(s) | 237, 240, 693, 3078, 3296 |
| BlpI | GCTNAGC | 1 cut(s) | 2175 |
| BlsI | GCNGC | 5 cut(s) | 238, 241, 694, 3079, 3297 |
| BmcAI | AGTACT | 1 cut(s) | 2012 |
| Bme1390I | CCNGG | 3 cut(s) | 816, 2652, 2876 |
| BmeT110I | CYCGRG | 2 cut(s) | 579, 2980 |
| BmgBI | CACGTC | 1 cut(s) | 3378 |
| BmgT120I | GGNCC | 4 cut(s) | 34, 2492, 2978, 3226 |
| BmiI | GGNNCC | 2 cut(s) | 36, 1390 |
| BmrFI | CCNGG | 3 cut(s) | 816, 2652, 2876 |
| BmrI | ACTGGG | 1 cut(s) | 2039 |
| BmuI | ACTGGG | 1 cut(s) | 2039 |
| BpiI | GAAGAC | 3 cut(s) | 763, 864, 1497 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 562, 594, 2035, 2067, 3326, 3358 |
| BpmI | CTGGAG | 2 cut(s) | 921, 1398 |
| Bpu10I | CCTNAGC | 2 cut(s) | 793, 2753 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2175 |
| Bpu14I | TTCGAA | 1 cut(s) | 953 |
| BpuEI | CTTGAG | 3 cut(s) | 2991, 3186, 3399 |
| Bsa29I | ATCGAT | 1 cut(s) | 3153 |
| BsaBI | GATNNNNATC | 1 cut(s) | 514 |
| BsaHI | GRCGYC | 2 cut(s) | 575, 3095 |
| BsaI | GGTCTC | 1 cut(s) | 3204 |
| BsaJI | CCNNGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| BsaWI | WCCGGW | 1 cut(s) | 91 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1254, 1284, 2726, 2756 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 815, 1413, 1897, 2342, 2513 |
| Bse1I | ACTGG | 8 cut(s) | 866, 904, 1246, 1601, 2034, 2191, 2868, 3273 |
| Bse3DI | GCAATG | 4 cut(s) | 178, 305, 406, 3096 |
| Bse8I | GATNNNNATC | 1 cut(s) | 514 |
| BseAI | TCCGGA | 1 cut(s) | 91 |
| BseBI | CCWGG | 3 cut(s) | 816, 2652, 2876 |
| BseCI | ATCGAT | 1 cut(s) | 3153 |
| BseDI | CCNNGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| BseJI | GATNNNNATC | 1 cut(s) | 514 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 815, 1413, 1897, 2342, 2513 |
| BseMI | GCAATG | 4 cut(s) | 178, 305, 406, 3096 |
| BseMII | CTCAG | 8 cut(s) | 696, 807, 1563, 1884, 2097, 2166, 2697, 3527 |
| BseNI | ACTGG | 8 cut(s) | 866, 904, 1246, 1601, 2034, 2191, 2868, 3273 |
| BseRI | GAGGAG | 2 cut(s) | 735, 2021 |
| BseSI | GKGCMC | 3 cut(s) | 1949, 2629, 3383 |
| BseXI | GCAGC | 5 cut(s) | 223, 226, 704, 3064, 3282 |
| BseYI | CCCAGC | 2 cut(s) | 1343, 2920 |
| BsgI | GTGCAG | 2 cut(s) | 579, 2335 |
| Bsh1236I | CGCG | 2 cut(s) | 20, 3451 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1728 |
| BshFI | GGCC | 6 cut(s) | 35, 336, 2494, 2874, 2979, 3228 |
| BshNI | GGYRCC | 1 cut(s) | 1388 |
| BshVI | ATCGAT | 1 cut(s) | 3153 |
| BsiEI | CGRYCG | 1 cut(s) | 1728 |
| BsiHKAI | GWGCWC | 8 cut(s) | 794, 1888, 1949, 2112, 2295, 2701, 3339, 3383 |
| BsiHKCI | CYCGRG | 2 cut(s) | 579, 2980 |
| BsiSI | CCGG | 5 cut(s) | 92, 912, 1217, 1877, 3249 |
| BslFI | GGGAC | 5 cut(s) | 171, 569, 1280, 2046, 3441 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 815, 1413, 1897, 2342, 2513 |
| BsmAI | GTCTC | 8 cut(s) | 469, 657, 897, 1209, 1450, 2038, 2410, 3204 |
| BsmBI | CGTCTC | 1 cut(s) | 897 |
| BsmFI | GGGAC | 5 cut(s) | 171, 569, 1280, 2046, 3441 |
| BsmI | GAATGC | 3 cut(s) | 807, 2551, 2804 |
| BsnI | GGCC | 6 cut(s) | 35, 336, 2494, 2874, 2979, 3228 |
| Bso31I | GGTCTC | 1 cut(s) | 3204 |
| BsoBI | CYCGRG | 2 cut(s) | 579, 2980 |
| Bsp119I | TTCGAA | 1 cut(s) | 953 |
| Bsp13I | TCCGGA | 1 cut(s) | 91 |
| Bsp1407I | TGTACA | 2 cut(s) | 2851, 3361 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2175 |
| Bsp19I | CCATGG | 1 cut(s) | 30 |
| BspACI | CCGC | 7 cut(s) | 64, 226, 428, 1277, 1728, 3108, 3449 |
| BspANI | GGCC | 6 cut(s) | 35, 336, 2494, 2874, 2979, 3228 |
| BspCNI | CTCAG | 8 cut(s) | 697, 806, 1564, 1883, 2098, 2167, 2698, 3526 |
| BspDI | ATCGAT | 1 cut(s) | 3153 |
| BspEI | TCCGGA | 1 cut(s) | 91 |
| BspFNI | CGCG | 2 cut(s) | 20, 3451 |
| BspHI | TCATGA | 2 cut(s) | 2278, 2305 |
| BspLI | GGNNCC | 2 cut(s) | 36, 1390 |
| BspMAI | CTGCAG | 2 cut(s) | 165, 244 |
| BspPI | GGATC | 6 cut(s) | 1243, 1428, 1684, 1729, 3025, 3254 |
| BspT104I | TTCGAA | 1 cut(s) | 953 |
| BspT107I | GGYRCC | 1 cut(s) | 1388 |
| BspTNI | GGTCTC | 1 cut(s) | 3204 |
| BsrDI | GCAATG | 4 cut(s) | 178, 305, 406, 3096 |
| BsrGI | TGTACA | 2 cut(s) | 2851, 3361 |
| BsrI | ACTGG | 8 cut(s) | 866, 904, 1246, 1601, 2034, 2191, 2868, 3273 |
| BssECI | CCNNGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| BssNI | GRCGYC | 2 cut(s) | 575, 3095 |
| BssSI | CACGAG | 3 cut(s) | 555, 825, 2052 |
| BssT1I | CCWWGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| Bst2BI | CACGAG | 3 cut(s) | 555, 825, 2052 |
| Bst2UI | CCWGG | 3 cut(s) | 816, 2652, 2876 |
| Bst4CI | ACNGT | 9 cut(s) | 76, 940, 998, 1444, 1705, 2299, 2333, 2792, 3393 |
| Bst6I | CTCTTC | 1 cut(s) | 128 |
| BstACI | GRCGYC | 2 cut(s) | 575, 3095 |
| BstAUI | TGTACA | 2 cut(s) | 2851, 3361 |
| BstBI | TTCGAA | 1 cut(s) | 953 |
| BstC8I | GCNNGC | 6 cut(s) | 440, 1033, 2819, 2955, 3349, 3443 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstEII | GGTNACC | 1 cut(s) | 545 |
| BstFNI | CGCG | 2 cut(s) | 20, 3451 |
| BstH2I | RGCGCY | 1 cut(s) | 894 |
| BstHHI | GCGC | 5 cut(s) | 249, 893, 1349, 1970, 3453 |
| BstMAI | GTCTC | 8 cut(s) | 469, 657, 897, 1209, 1450, 2038, 2410, 3204 |
| BstMCI | CGRYCG | 1 cut(s) | 1728 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 26, 255, 2684, 3086, 3225, 3410 |
| BstNI | CCWGG | 3 cut(s) | 816, 2652, 2876 |
| BstNSI | RCATGY | 3 cut(s) | 689, 1035, 3351 |
| BstPI | GGTNACC | 1 cut(s) | 545 |
| BstSCI | CCNGG | 3 cut(s) | 814, 2650, 2874 |
| BstSFI | CTRYAG | 3 cut(s) | 161, 240, 327 |
| BstSLI | GKGCMC | 3 cut(s) | 1949, 2629, 3383 |
| BstUI | CGCG | 2 cut(s) | 20, 3451 |
| BstV1I | GCAGC | 5 cut(s) | 223, 226, 704, 3064, 3282 |
| BstV2I | GAAGAC | 3 cut(s) | 763, 864, 1497 |
| BstX2I | RGATCY | 5 cut(s) | 1420, 1676, 1905, 3017, 3259 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1669, 2792 |
| BstYI | RGATCY | 5 cut(s) | 1420, 1676, 1905, 3017, 3259 |
| Bsu15I | ATCGAT | 1 cut(s) | 3153 |
| BsuI | GTATCC | 1 cut(s) | 8 |
| BsuRI | GGCC | 6 cut(s) | 35, 336, 2494, 2874, 2979, 3228 |
| BsuTUI | ATCGAT | 1 cut(s) | 3153 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtgZI | GCGATG | 3 cut(s) | 359, 483, 3215 |
| BtrI | CACGTC | 1 cut(s) | 3378 |
| BtsI | GCAGTG | 5 cut(s) | 170, 249, 385, 1042, 3438 |
| Cac8I | GCNNGC | 6 cut(s) | 440, 1033, 2819, 2955, 3349, 3443 |
| CaiI | CAGNNNCTG | 3 cut(s) | 326, 1468, 1709 |
| CciI | TCATGA | 2 cut(s) | 2278, 2305 |
| CfoI | GCGC | 5 cut(s) | 249, 893, 1349, 1970, 3453 |
| Cfr13I | GGNCC | 4 cut(s) | 34, 2492, 2978, 3226 |
| ClaI | ATCGAT | 1 cut(s) | 3153 |
| CseI | GACGC | 4 cut(s) | 206, 583, 3084, 3311 |
| CsiI | ACCWGGT | 1 cut(s) | 2650 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2830, 2865 |
| DraI | TTTAAA | 1 cut(s) | 2808 |
| EaeI | YGGCCR | 1 cut(s) | 2872 |
| Eam1104I | CTCTTC | 1 cut(s) | 128 |
| EarI | CTCTTC | 1 cut(s) | 128 |
| EciI | GGCGGA | 1 cut(s) | 241 |
| Ecl136II | GAGCTC | 3 cut(s) | 792, 2699, 3337 |
| Eco130I | CCWWGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| Eco24I | GRGCYC | 4 cut(s) | 794, 2701, 2722, 3339 |
| Eco31I | GGTCTC | 1 cut(s) | 3204 |
| Eco32I | GATATC | 1 cut(s) | 1521 |
| Eco53kI | GAGCTC | 3 cut(s) | 792, 2699, 3337 |
| Eco57I | CTGAAG | 4 cut(s) | 167, 831, 1065, 2868 |
| Eco88I | CYCGRG | 2 cut(s) | 579, 2980 |
| Eco91I | GGTNACC | 1 cut(s) | 545 |
| EcoICRI | GAGCTC | 3 cut(s) | 792, 2699, 3337 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2492 |
| EcoO65I | GGTNACC | 1 cut(s) | 545 |
| EcoRII | CCWGG | 3 cut(s) | 814, 2650, 2874 |
| EcoRV | GATATC | 1 cut(s) | 1521 |
| EcoT14I | CCWWGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| EcoT22I | ATGCAT | 1 cut(s) | 807 |
| EcoT38I | GRGCYC | 4 cut(s) | 794, 2701, 2722, 3339 |
| ErhI | CCWWGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| Esp3I | CGTCTC | 1 cut(s) | 897 |
| FaqI | GGGAC | 5 cut(s) | 171, 569, 1280, 2046, 3441 |
| FauI | CCCGC | 1 cut(s) | 3101 |
| FauNDI | CATATG | 2 cut(s) | 1539, 3063 |
| FbaI | TGATCA | 1 cut(s) | 2302 |
| FblI | GTMKAC | 2 cut(s) | 1472, 1780 |
| Fnu4HI | GCNGC | 5 cut(s) | 237, 240, 693, 3078, 3296 |
| FriOI | GRGCYC | 4 cut(s) | 794, 2701, 2722, 3339 |
| Fsp4HI | GCNGC | 5 cut(s) | 237, 240, 693, 3078, 3296 |
| FspBI | CTAG | 6 cut(s) | 459, 1065, 2535, 3021, 3143, 3180 |
| FspI | TGCGCA | 1 cut(s) | 248 |
| GlaI | GCGC | 5 cut(s) | 248, 892, 1348, 1969, 3452 |
| GluI | GCNGC | 5 cut(s) | 237, 240, 693, 3078, 3296 |
| GsaI | CCCAGC | 2 cut(s) | 1347, 2924 |
| GsuI | CTGGAG | 2 cut(s) | 921, 1398 |
| HaeII | RGCGCY | 1 cut(s) | 894 |
| HaeIII | GGCC | 6 cut(s) | 35, 336, 2494, 2874, 2979, 3228 |
| HapII | CCGG | 5 cut(s) | 92, 912, 1217, 1877, 3249 |
| HgaI | GACGC | 4 cut(s) | 206, 583, 3084, 3311 |
| HhaI | GCGC | 5 cut(s) | 249, 893, 1349, 1970, 3453 |
| Hin1I | GRCGYC | 2 cut(s) | 575, 3095 |
| Hin6I | GCGC | 5 cut(s) | 247, 891, 1347, 1968, 3451 |
| HinP1I | GCGC | 5 cut(s) | 247, 891, 1347, 1968, 3451 |
| HincII | GTYRAC | 1 cut(s) | 2648 |
| HindII | GTYRAC | 1 cut(s) | 2648 |
| HindIII | AAGCTT | 3 cut(s) | 440, 536, 621 |
| HpaII | CCGG | 5 cut(s) | 92, 912, 1217, 1877, 3249 |
| HphI | GGTGA | 4 cut(s) | 557, 970, 1595, 2536 |
| Hpy166II | GTNNAC | 9 cut(s) | 961, 1473, 1781, 1947, 2648, 3193, 3364, 3381, 3475 |
| Hpy8I | GTNNAC | 9 cut(s) | 961, 1473, 1781, 1947, 2648, 3193, 3364, 3381, 3475 |
| HpyCH4III | ACNGT | 9 cut(s) | 76, 940, 998, 1444, 1705, 2299, 2333, 2792, 3393 |
| HpyCH4IV | ACGT | 6 cut(s) | 1783, 1805, 2843, 2908, 3123, 3377 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 26, 255, 2684, 3086, 3225, 3410 |
| HpySE526I | ACGT | 6 cut(s) | 1783, 1805, 2843, 2908, 3123, 3377 |
| Hsp92I | GRCGYC | 2 cut(s) | 575, 3095 |
| HspAI | GCGC | 5 cut(s) | 247, 891, 1347, 1968, 3451 |
| Kpn2I | TCCGGA | 1 cut(s) | 91 |
| KpnI | GGTACC | 1 cut(s) | 1392 |
| Ksp22I | TGATCA | 1 cut(s) | 2302 |
| LmnI | GCTCC | 5 cut(s) | 168, 1262, 1741, 2749, 3334 |
| Lsp1109I | GCAGC | 5 cut(s) | 223, 226, 704, 3064, 3282 |
| MabI | ACCWGGT | 1 cut(s) | 2650 |
| MaeI | CTAG | 6 cut(s) | 459, 1065, 2535, 3021, 3143, 3180 |
| MaeII | ACGT | 6 cut(s) | 1783, 1805, 2843, 2908, 3123, 3377 |
| MaeIII | GTNAC | 6 cut(s) | 545, 1603, 1705, 2844, 3124, 3433 |
| MflI | RGATCY | 5 cut(s) | 1420, 1676, 1905, 3017, 3259 |
| MlsI | TGGCCA | 1 cut(s) | 2874 |
| MluNI | TGGCCA | 1 cut(s) | 2874 |
| MlyI | GAGTC | 7 cut(s) | 591, 1214, 2196, 2468, 3020, 3170, 3505 |
| MmeI | TCCRAC | 5 cut(s) | 544, 629, 846, 2005, 3448 |
| Mox20I | TGGCCA | 1 cut(s) | 2874 |
| Mph1103I | ATGCAT | 1 cut(s) | 807 |
| MroI | TCCGGA | 1 cut(s) | 91 |
| MroXI | GAANNNNTTC | 2 cut(s) | 322, 2101 |
| MscI | TGGCCA | 1 cut(s) | 2874 |
| MslI | CAYNNNNRTG | 3 cut(s) | 263, 363, 492 |
| Msp20I | TGGCCA | 1 cut(s) | 2874 |
| MspI | CCGG | 5 cut(s) | 92, 912, 1217, 1877, 3249 |
| MspR9I | CCNGG | 3 cut(s) | 816, 2652, 2876 |
| Mva1269I | GAATGC | 3 cut(s) | 807, 2551, 2804 |
| MvaI | CCWGG | 3 cut(s) | 816, 2652, 2876 |
| MvnI | CGCG | 2 cut(s) | 20, 3451 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 26, 255, 2684, 3086, 3225, 3410 |
| NcoI | CCATGG | 1 cut(s) | 30 |
| NdeI | CATATG | 2 cut(s) | 1539, 3063 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 1390 |
| NmuCI | GTSAC | 4 cut(s) | 545, 1603, 1705, 3433 |
| NsbI | TGCGCA | 1 cut(s) | 248 |
| NsiI | ATGCAT | 1 cut(s) | 807 |
| NspI | RCATGY | 3 cut(s) | 689, 1035, 3351 |
| NspV | TTCGAA | 1 cut(s) | 953 |
| PaeI | GCATGC | 2 cut(s) | 1035, 3351 |
| PaeR7I | CTCGAG | 1 cut(s) | 579 |
| PagI | TCATGA | 2 cut(s) | 2278, 2305 |
| PctI | GAATGC | 3 cut(s) | 807, 2551, 2804 |
| PdmI | GAANNNNTTC | 2 cut(s) | 322, 2101 |
| PkrI | GCNGC | 5 cut(s) | 238, 241, 694, 3079, 3297 |
| PleI | GAGTC | 7 cut(s) | 590, 1214, 2196, 2467, 3019, 3170, 3505 |
| PpsI | GAGTC | 7 cut(s) | 590, 1214, 2196, 2467, 3019, 3170, 3505 |
| Psp124BI | GAGCTC | 3 cut(s) | 794, 2701, 3339 |
| Psp1406I | AACGTT | 1 cut(s) | 1805 |
| Psp6I | CCWGG | 3 cut(s) | 814, 2650, 2874 |
| PspEI | GGTNACC | 1 cut(s) | 545 |
| PspFI | CCCAGC | 2 cut(s) | 1343, 2920 |
| PspGI | CCWGG | 3 cut(s) | 814, 2650, 2874 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 1390 |
| PspPI | GGNCC | 4 cut(s) | 34, 2492, 2978, 3226 |
| PspXI | VCTCGAGB | 1 cut(s) | 579 |
| PstI | CTGCAG | 2 cut(s) | 165, 244 |
| PstNI | CAGNNNCTG | 3 cut(s) | 326, 1468, 1709 |
| PsuI | RGATCY | 5 cut(s) | 1420, 1676, 1905, 3017, 3259 |
| RseI | CAYNNNNRTG | 3 cut(s) | 263, 363, 492 |
| SacI | GAGCTC | 3 cut(s) | 794, 2701, 3339 |
| SatI | GCNGC | 5 cut(s) | 237, 240, 693, 3078, 3296 |
| Sau96I | GGNCC | 4 cut(s) | 34, 2492, 2978, 3226 |
| ScaI | AGTACT | 1 cut(s) | 2012 |
| SchI | GAGTC | 7 cut(s) | 591, 1214, 2196, 2468, 3020, 3170, 3505 |
| ScrFI | CCNGG | 3 cut(s) | 816, 2652, 2876 |
| SexAI | ACCWGGT | 1 cut(s) | 2650 |
| SfcI | CTRYAG | 3 cut(s) | 161, 240, 327 |
| Sfr274I | CTCGAG | 1 cut(s) | 579 |
| SfuI | TTCGAA | 1 cut(s) | 953 |
| SlaI | CTCGAG | 1 cut(s) | 579 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 263, 363, 492 |
| SmlI | CTYRAG | 4 cut(s) | 579, 3006, 3201, 3414 |
| SmoI | CTYRAG | 4 cut(s) | 579, 3006, 3201, 3414 |
| SphI | GCATGC | 2 cut(s) | 1035, 3351 |
| SsiI | CCGC | 7 cut(s) | 64, 226, 428, 1277, 1728, 3108, 3449 |
| SspI | AATATT | 2 cut(s) | 1485, 2425 |
| SspMI | CTAG | 6 cut(s) | 459, 1065, 2535, 3021, 3143, 3180 |
| SstI | GAGCTC | 3 cut(s) | 794, 2701, 3339 |
| StyD4I | CCNGG | 3 cut(s) | 814, 2650, 2874 |
| StyI | CCWWGG | 5 cut(s) | 30, 1982, 2083, 2454, 2939 |
| TaaI | ACNGT | 9 cut(s) | 76, 940, 998, 1444, 1705, 2299, 2333, 2792, 3393 |
| TaiI | ACGT | 6 cut(s) | 1786, 1808, 2846, 2911, 3126, 3380 |
| TaqI | TCGA | 9 cut(s) | 421, 580, 953, 1508, 1724, 2095, 2991, 3053, 3153 |
| TatI | WGTACW | 4 cut(s) | 1933, 2010, 2851, 3361 |
| TseFI | GTSAC | 4 cut(s) | 545, 1603, 1705, 3433 |
| TseI | GCWGC | 5 cut(s) | 236, 239, 692, 3077, 3295 |
| Tsp45I | GTSAC | 4 cut(s) | 545, 1603, 1705, 3433 |
| TspGWI | ACGGA | 3 cut(s) | 145, 768, 1513 |
| VneI | GTGCAC | 2 cut(s) | 1945, 3379 |
| XapI | RAATTY | 5 cut(s) | 1286, 2351, 2482, 2926, 3483 |
| XbaI | TCTAGA | 2 cut(s) | 3142, 3179 |
| XceI | RCATGY | 3 cut(s) | 689, 1035, 3351 |
| XhoI | CTCGAG | 1 cut(s) | 579 |
| XmiI | GTMKAC | 2 cut(s) | 1472, 1780 |
| XmnI | GAANNNNTTC | 2 cut(s) | 322, 2101 |
| XspI | CTAG | 6 cut(s) | 459, 1065, 2535, 3021, 3143, 3180 |
| ZrmI | AGTACT | 1 cut(s) | 2012 |
| Zsp2I | ATGCAT | 1 cut(s) | 807 |