Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0002363

Physical Location & Seq

Genomic Coordinates Forward (+)

141177 .. 151136

Gene Structure 9960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3468 bp

atggcacccaccaggaaagctaaaaccgtgaaacggtattcaaatttgagtgaggcctctcctggtggcaaaaataagcaagggaagagaaagtttaccgatcaattaggaccgcagtggagcaagggagagcttcagcgattctatgaagcctaccggaaatatgggcaaaattggaagaaggtggctgctgtagtgcgcaacagaaatattgagatggtggaggctctttacaatatgaaccgagcgtacttgtcattgccagagggcacggcttctgttgttggccttatagcgatgatgacagaccactataatgttatggaaggcagtgaaagtgaacgggagagcaatgatgctataagatattcccggagaccccagaaacgtaagcttggtaaagatagcgtctcaaaagacgtgttccagtcccattcaatggcttcagtagatggatgcctatcatacttaaaacggagaagacttgatggtaatcagcctcgtgcagttgggaagaggacacctcgcttcccagttcaatattcatctaagaaagatgatggagaaaattatgcttctccaattagaaggggtcggaaatcagaggcagataatgattatgatgttgcccaggttgcagcattattgactgaggcttctcacagaggaggctctcctcaactttctcaaacaccatacagaagatcttctggtcagagctcgcaaagaatgcatccaccatcagggaaagctcaagccaaccttcgtgatgcttcaatggacgaagactgtttggaaggtagtataggaagtagaggggctgaaactggagattatgccagagacagtagttccttgatggacatggaaggtgtaggtactgtagaaattaataggaaggggaagaaagtttatgggaagaaagagaaagttaaagacattcgaaaccatcaatttgatgatggtggtgaagcatgtagtggcactgaaggaggacttaatgtcagtgccaagggaaaagttgatattgaagtttcagatgcaaaaggagattggttttcctcacaagttcaaaggaatgaaagcaagaaactatattttggagatgatagcgcagaactggatgctctgcaaactttggctgatttgtcactgatgatgccagcatccacaatggaatctggatcctctttgcagttgaaggatgaaagaacaacttctgaaatggaagaaaaatctaatatacctgaatccacatctaccagccaatttagaaacaaaaataaactccctggggggaaacagagagaacccattgcagattctcgaactgagggtactaatgccaaaaagtccaaatttgcaagggactcgacacccattgatatcaatgttgtctccgaatcagaacagctccagcctaccaataaattactgaaaaggaggcggaaaccctcagtgtcaaagatattaaatgccgaagcaaacgttgattctactataaatgagccttcaaattccgaggcttttggtcaagaagagactaaaccagtggttaaagggaaacgtactggtcaaatctccactccttcaaaacaatggaaatcggtcagaccagtggacggctctttgaatagtgattttgggcaaacagtgagtgatttaatgccagtaacggcagagggtcccactccaaaccaagttcattccccaactaaacaaagaagtagacgtaaacggtatctacccagagcagcagtgcccaagtcatctgagaacatattaaaaactcaacttcataaacactccaactcagtgcaggacagagttctctatctaaaggagaagatgtcttgttgcttgtcatcacatttggtacgtagatggtgtacgtttgagtggttttatagtgcgattgattacccttggtttgccaaaagagagtttgaggagtacttaaatcatgttggacttggacacattccgaggctaactcgcgttgaatggggtgtgattagaagctccctgggaaaacctcggaggttttctgagcatttcctatgtgaagaaagagagaaacttaaacaatatcgggaatctgtgagaaaacattatgctgaactccgcagtggtgttagggagggactcccaacagatttggcaagacctttatcagttggacaacgtgtcatcgctcttcatccgaaaacaagagaagttcacgatggaagtgtgctcaccgttgatcatgataagtgcagggttcagtttgatcgtccagagataggagtagaattcgtcatggatgtggattgtatgccttcaaacccattggataacatgccagaagcacttaagagacagaatattgcttttgacaaattccctctcacattaccgcatctgaatgggaatttaaattttgaaagacctgtgatgaatgcttcaagtgggcatttggagaaagaacccagccccatgaatacttccttacagcagggaaagggggatacaaaccatataatttcacaaccaaaagcagcatctgttgatattgctggtgcacagacagcgagtagtcaacctggtgtggtggcacacaatccagcaagggaagctgacatacgagctctttcagacctgaatcgcgctcttgataaaaagaaagcattgttgatggagcttagcacaattaataacatcctggaaaaccagaacagtggagaatgctctttaaaagattgcgataagaagcattacgccacagtacttgtacagctaaaggaagccagtggccaggtttcttctgctttgcttagtttgaggcaacgtaatacctaccctggaaataccttgcctccttcgatgaaacacccaacgaactccactgtctatggcggtcttcctagttcttttgatatatctatttctcaagagtcaggatccagcgttgctgacattgtcgaagtttcaagattgaaagcacatacattggtaaatgctgctgttcaggcaatgtcatcaaggaaggaaggggaagaagcttatgtaagggtaagaagggctctagattccatcgatattcagaatatgacatcagactctaggtcagcagtgagcaggactcaagagcaggtcaatggcaatttgggccatcgcaatcagttgatttctggtgcatcagagcccaaccttagtaatgatgcatctggtcccaagttacataccgagacggataaaaatgaatcacagatgctttcggaggttattactgcttgtgtcatggctgtgcacatgatacagacatgtactgaacgacaatatcctccggctgttgtggctcaagtattagattatgcagtcacaagcttgcatccacgttgtccccaaaatgttggaatgtacagagaaattcaaatgtgcatgggcagaatcaagacccagatattagcactcgtgccaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

DIRP Myb_DNA-binding

Protein Analysis

1155

Amino Acids

128.46

Weight (kDa)

9.23

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610
fragaria_vesca	FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170
malus_domestica	MD04G1203700.v1.1 MD12G1217500.v1.1
prunus_persica	Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1
pyrus_communis	pycom04g18020 pycom12g20300
rosa_chinensis	RchiOBHm_Chr3g0455181
rosa_laevigata	RLG00000025380
rosa_multiflora	Rmu_sc0002169.1_g000028
rosa_roxburghii	Rroxscaffold_6G00424500
rosa_rugosa	Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500
rosa_samantha	Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200
rosa_wichuraiana	Rw3G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	3124
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	1729
AccII	CGCG	2 cut(s)	1998, 2649
AciI	CCGC	5 cut(s)	113, 1447, 2125, 2399, 2898
AclI	AACGTT	1 cut(s)	1488
AclWI	GGATC	4 cut(s)	1179, 1192, 2937, 2950
AcoI	YGGCCR	1 cut(s)	2794
AcsI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3411
AcuI	CTGAAG	3 cut(s)	119, 429, 1008
AfiI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
AflII	CTTAAG	1 cut(s)	2354
AflIII	ACRYGT	3 cut(s)	420, 2185, 3305
AhdI	GACNNNNNGTC	3 cut(s)	1001, 2186, 3106
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	9 cut(s)	11, 61, 630, 1291, 2025, 2584, 2703, 2796, 2842
Alw21I	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3294
Alw26I	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3224
Alw44I	GTGCAC	2 cut(s)	2562, 3290
AlwI	GGATC	4 cut(s)	1179, 1192, 2937, 2950
AlwNI	CAGNNNCTG	1 cut(s)	2546
AoxI	GGCC	4 cut(s)	54, 286, 2794, 3151
ApaLI	GTGCAC	2 cut(s)	2562, 3290
ApeKI	GCWGC	5 cut(s)	188, 638, 1754, 2540, 3002
ApoI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3411
AseI	ATTAAT	2 cut(s)	891, 2694
Asp700I	GAANNNNTTC	2 cut(s)	706, 1216
AspLEI	GCGC	3 cut(s)	201, 1115, 2651
AspS9I	GGNCC	4 cut(s)	110, 1685, 3151, 3212
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	980, 2230
AsuII	TTCGAA	1 cut(s)	943
AvaII	GGWCC	3 cut(s)	110, 1685, 3212
BaeGI	GKGCMC	4 cut(s)	272, 1764, 2566, 3294
BalI	TGGCCA	1 cut(s)	2796
BamHI	GGATCC	2 cut(s)	1184, 2942
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	4 cut(s)	722, 2632, 3067, 3189
BarI	GAAGNNNNNNTAC	2 cut(s)	2607, 2639
BauI	CACGAG	2 cut(s)	501, 3455
BbsI	GAAGAC	3 cut(s)	487, 792, 2894
Bbv12I	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3294
BbvI	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2989
BceAI	ACGGC	3 cut(s)	288, 1639, 1692
BcgI	CGANNNNNNTGC	2 cut(s)	1353, 1387
BciT130I	CCWGG	9 cut(s)	13, 63, 632, 1293, 2027, 2586, 2705, 2798, 2844
BciVI	GTATCC	1 cut(s)	2503
BclI	TGATCA	1 cut(s)	2245
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3224
BfaI	CTAG	3 cut(s)	2907, 3068, 3105
BfmI	CTRYAG	2 cut(s)	192, 882
BfrI	CTTAAG	1 cut(s)	2354
BfuAI	ACCTGC	1 cut(s)	3124
BfuI	GTATCC	1 cut(s)	2503
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 3003
BlpI	GCTNAGC	1 cut(s)	2684
BlsI	GCNGC	5 cut(s)	190, 640, 1756, 2542, 3004
BmcAI	AGTACT	2 cut(s)	1955, 2769
Bme18I	GGWCC	3 cut(s)	110, 1685, 3212
BmeRI	GACNNNNNGTC	3 cut(s)	1001, 2186, 3106
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	4 cut(s)	110, 1685, 3151, 3212
BmiI	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2944, 3214
BmrI	ACTGGG	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	3 cut(s)	487, 792, 2894
BplI	GAGNNNNNCTC	6 cut(s)	508, 540, 1978, 2010, 3109, 3141
BpmI	CTGGAG	2 cut(s)	849, 1400
Bpu1102I	GCTNAGC	1 cut(s)	2684
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	4 cut(s)	738, 2916, 3111, 3327
BpuMI	CCSGG	1 cut(s)	373
Bsa29I	ATCGAT	1 cut(s)	3078
BsaAI	YACGTR	1 cut(s)	1880
BsaBI	GATNNNNATC	2 cut(s)	460, 492
BsaI	GGTCTC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	1835, 1865, 2842, 2872
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
Bse1I	ACTGG	9 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670, 2790
Bse3DI	GCAATG	4 cut(s)	257, 358, 1314, 3021
Bse8I	GATNNNNATC	2 cut(s)	460, 492
BseBI	CCWGG	9 cut(s)	13, 63, 632, 1293, 2027, 2586, 2705, 2798, 2844
BseCI	ATCGAT	1 cut(s)	3078
BseGI	GGATG	9 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 2700, 3373
BseJI	GATNNNNATC	2 cut(s)	460, 492
BseLI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
BseMI	GCAATG	4 cut(s)	257, 358, 1314, 3021
BseMII	CTCAG	6 cut(s)	642, 1323, 1470, 1764, 1827, 2040
BseNI	ACTGG	9 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670, 2790
BseRI	GAGGAG	3 cut(s)	666, 681, 1964
BseSI	GKGCMC	4 cut(s)	272, 1764, 2566, 3294
BseXI	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2989
BseYI	CCCAGC	1 cut(s)	2471
BsgI	GTGCAG	3 cut(s)	525, 1838, 2278
Bsh1236I	CGCG	2 cut(s)	1998, 2649
BshFI	GGCC	4 cut(s)	56, 288, 2796, 3153
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	3078
BsiHKAI	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3294
BsiSI	CCGG	3 cut(s)	157, 373, 3329
BslFI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3198, 3369
BslI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
BsmAI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3224
BsmBI	CGTCTC	2 cut(s)	415, 3224
BsmFI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3198, 3369
BsmI	GAATGC	3 cut(s)	735, 2446, 2732
BsnI	GGCC	4 cut(s)	56, 288, 2796, 3153
Bso31I	GGTCTC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 3067, 3189, 3294
Bsp1407I	TGTACA	2 cut(s)	2773, 3402
Bsp143I	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
Bsp1720I	GCTNAGC	1 cut(s)	2684
BspACI	CCGC	5 cut(s)	113, 1447, 2125, 2399, 2898
BspANI	GGCC	4 cut(s)	56, 288, 2796, 3153
BspCNI	CTCAG	6 cut(s)	643, 1324, 1469, 1765, 1826, 2041
BspDI	ATCGAT	1 cut(s)	3078
BspFNI	CGCG	2 cut(s)	1998, 2649
BspHI	TCATGA	1 cut(s)	2248
BspLI	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2944, 3214
BspMI	ACCTGC	1 cut(s)	3124
BspPI	GGATC	4 cut(s)	1179, 1192, 2937, 2950
BspQI	GCTCTTC	1 cut(s)	2202
BspT104I	TTCGAA	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2354
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	4 cut(s)	257, 358, 1314, 3021
BsrGI	TGTACA	2 cut(s)	2773, 3402
BsrI	ACTGG	9 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670, 2790
BssMI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
BssSI	CACGAG	2 cut(s)	501, 3455
BssT1I	CCWWGG	2 cut(s)	1011, 1925
Bst2BI	CACGAG	2 cut(s)	501, 3455
Bst2UI	CCWGG	9 cut(s)	13, 63, 632, 1293, 2027, 2586, 2705, 2798, 2844
Bst6I	CTCTTC	4 cut(s)	80, 509, 1533, 2202
BstAFI	CTTAAG	1 cut(s)	2354
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstAUI	TGTACA	2 cut(s)	2773, 3402
BstBAI	YACGTR	1 cut(s)	1880
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	3 cut(s)	722, 1164, 3371
BstF5I	GGATG	9 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 2700, 3373
BstFNI	CGCG	2 cut(s)	1998, 2649
BstHHI	GCGC	3 cut(s)	201, 1115, 2651
BstKTI	GATC	6 cut(s)	103, 707, 1187, 2248, 2275, 2945
BstMAI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3224
BstMBI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
BstMWI	GCNNNNNNNGC	7 cut(s)	635, 730, 2570, 2615, 3011, 3150, 3338
BstNI	CCWGG	9 cut(s)	13, 63, 632, 1293, 2027, 2586, 2705, 2798, 2844
BstNSI	RCATGY	3 cut(s)	978, 2344, 3309
BstSFI	CTRYAG	2 cut(s)	192, 882
BstSLI	GKGCMC	4 cut(s)	272, 1764, 2566, 3294
BstSNI	TACGTA	1 cut(s)	1880
BstUI	CGCG	2 cut(s)	1998, 2649
BstV1I	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2989
BstV2I	GAAGAC	3 cut(s)	487, 792, 2894
BstX2I	RGATCY	3 cut(s)	704, 1184, 2942
BstXI	CCANNNNNNTGG	2 cut(s)	2720, 3395
BstYI	RGATCY	3 cut(s)	704, 1184, 2942
Bsu15I	ATCGAT	1 cut(s)	3078
BsuI	GTATCC	1 cut(s)	2503
BsuRI	GGCC	4 cut(s)	56, 288, 2796, 3153
BsuTUI	ATCGAT	1 cut(s)	3078
BtgZI	GCGATG	3 cut(s)	311, 2176, 3140
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	9 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 2700, 3373
BtsI	GCAGTG	5 cut(s)	122, 337, 1764, 2134, 3120
BveI	ACCTGC	1 cut(s)	3124
Cac8I	GCNNGC	3 cut(s)	722, 1164, 3371
CaiI	CAGNNNCTG	1 cut(s)	2546
CciI	TCATGA	1 cut(s)	2248
CfoI	GCGC	3 cut(s)	201, 1115, 2651
Cfr13I	GGNCC	4 cut(s)	110, 1685, 3151, 3212
ClaI	ATCGAT	1 cut(s)	3078
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	2584
CspCI	CAANNNNNGTGG	2 cut(s)	2752, 2787
DpnI	GATC	6 cut(s)	102, 706, 1186, 2247, 2274, 2944
DpnII	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
DraI	TTTAAA	2 cut(s)	2418, 2736
DriI	GACNNNNNGTC	3 cut(s)	1001, 2186, 3106
EaeI	YGGCCR	1 cut(s)	2794
Eam1104I	CTCTTC	4 cut(s)	80, 509, 1533, 2202
Eam1105I	GACNNNNNGTC	3 cut(s)	1001, 2186, 3106
EarI	CTCTTC	4 cut(s)	80, 509, 1533, 2202
EciI	GGCGGA	1 cut(s)	1462
Ecl136II	GAGCTC	2 cut(s)	720, 2630
Eco105I	TACGTA	1 cut(s)	1880
Eco130I	CCWWGG	2 cut(s)	1011, 1925
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	4 cut(s)	722, 2632, 3067, 3189
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	1387
Eco47I	GGWCC	3 cut(s)	110, 1685, 3212
Eco53kI	GAGCTC	2 cut(s)	720, 2630
Eco57I	CTGAAG	3 cut(s)	119, 429, 1008
EcoICRI	GAGCTC	2 cut(s)	720, 2630
EcoO109I	RGGNCCY	1 cut(s)	1685
EcoRI	GAATTC	1 cut(s)	2294
EcoRII	CCWGG	9 cut(s)	11, 61, 630, 1291, 2025, 2584, 2703, 2796, 2842
EcoRV	GATATC	1 cut(s)	1387
EcoT14I	CCWWGG	2 cut(s)	1011, 1925
EcoT22I	ATGCAT	2 cut(s)	735, 3208
EcoT38I	GRGCYC	4 cut(s)	722, 2632, 3067, 3189
ErhI	CCWWGG	2 cut(s)	1011, 1925
Esp3I	CGTCTC	2 cut(s)	415, 3224
FalI	AAGNNNNNCTT	6 cut(s)	747, 779, 981, 1013, 1201, 1233
FaqI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3198, 3369
FbaI	TGATCA	1 cut(s)	2245
FblI	GTMKAC	1 cut(s)	1729
Fnu4HI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 3003
FokI	GGATG	9 cut(s)	468, 720, 1136, 1153, 1217, 2187, 2318, 2687, 3360
FriOI	GRGCYC	4 cut(s)	722, 2632, 3067, 3189
Fsp4HI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 3003
FspBI	CTAG	3 cut(s)	2907, 3068, 3105
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	3 cut(s)	200, 1114, 2650
GluI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 3003
GsaI	CCCAGC	1 cut(s)	2475
GsuI	CTGGAG	2 cut(s)	849, 1400
HaeIII	GGCC	4 cut(s)	56, 288, 2796, 3153
HapII	CCGG	3 cut(s)	157, 373, 3329
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	3 cut(s)	201, 1115, 2651
Hin6I	GCGC	3 cut(s)	199, 1113, 2649
HinP1I	GCGC	3 cut(s)	199, 1113, 2649
HincII	GTYRAC	1 cut(s)	2582
HindII	GTYRAC	1 cut(s)	2582
HindIII	AAGCTT	3 cut(s)	392, 3042, 3367
HpaII	CCGG	3 cut(s)	157, 373, 3329
HphI	GGTGA	2 cut(s)	980, 2230
HpyF10VI	GCNNNNNNNGC	7 cut(s)	635, 730, 2570, 2615, 3011, 3150, 3338
HspAI	GCGC	3 cut(s)	199, 1113, 2649
KflI	GGGWCCC	1 cut(s)	1685
Ksp22I	TGATCA	1 cut(s)	2245
Kzo9I	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
LguI	GCTCTTC	1 cut(s)	2202
LmnI	GCTCC	4 cut(s)	120, 1419, 2027, 2680
Lsp1109I	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2989
MabI	ACCWGGT	1 cut(s)	2584
MaeI	CTAG	3 cut(s)	2907, 3068, 3105
MaeIII	GTNAC	4 cut(s)	1149, 1672, 3219, 3361
MalI	GATC	6 cut(s)	102, 706, 1186, 2247, 2274, 2944
MboI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
MflI	RGATCY	3 cut(s)	704, 1184, 2942
MhlI	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 3067, 3189, 3294
MlsI	TGGCCA	1 cut(s)	2796
MluNI	TGGCCA	1 cut(s)	2796
MlyI	GAGTC	5 cut(s)	1364, 2139, 2945, 3095, 3118
MmeI	TCCRAC	5 cut(s)	575, 1833, 1948, 2158, 3376
Mox20I	TGGCCA	1 cut(s)	2796
Mph1103I	ATGCAT	2 cut(s)	735, 3208
MroXI	GAANNNNTTC	2 cut(s)	706, 1216
MscI	TGGCCA	1 cut(s)	2796
MslI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3287
Msp20I	TGGCCA	1 cut(s)	2796
MspCI	CTTAAG	1 cut(s)	2354
MspI	CCGG	3 cut(s)	157, 373, 3329
Mva1269I	GAATGC	3 cut(s)	735, 2446, 2732
MvaI	CCWGG	9 cut(s)	13, 63, 632, 1293, 2027, 2586, 2705, 2798, 2844
MvnI	CGCG	2 cut(s)	1998, 2649
MwoI	GCNNNNNNNGC	7 cut(s)	635, 730, 2570, 2615, 3011, 3150, 3338
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
NlaIV	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2944, 3214
NmuCI	GTSAC	2 cut(s)	1149, 3361
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	735, 3208
NspI	RCATGY	3 cut(s)	978, 2344, 3309
NspV	TTCGAA	1 cut(s)	943
PagI	TCATGA	1 cut(s)	2248
PasI	CCCWGGG	2 cut(s)	1292, 2026
PceI	AGGCCT	1 cut(s)	56
PciI	ACATGT	1 cut(s)	3305
PciSI	GCTCTTC	1 cut(s)	2202
PctI	GAATGC	3 cut(s)	735, 2446, 2732
PdmI	GAANNNNTTC	2 cut(s)	706, 1216
PflFI	GACNNNGTC	1 cut(s)	2960
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	2 cut(s)	371, 2703
PkrI	GCNGC	5 cut(s)	190, 640, 1756, 2542, 3004
PleI	GAGTC	5 cut(s)	1364, 2139, 2944, 3095, 3118
PpsI	GAGTC	5 cut(s)	1364, 2139, 2944, 3095, 3118
Ppu21I	YACGTR	1 cut(s)	1880
PpuMI	RGGWCCY	1 cut(s)	1685
PscI	ACATGT	1 cut(s)	3305
PshBI	ATTAAT	2 cut(s)	891, 2694
Psp124BI	GAGCTC	2 cut(s)	722, 2632
Psp1406I	AACGTT	1 cut(s)	1488
Psp5II	RGGWCCY	1 cut(s)	1685
Psp6I	CCWGG	9 cut(s)	11, 61, 630, 1291, 2025, 2584, 2703, 2796, 2842
PspFI	CCCAGC	1 cut(s)	2471
PspGI	CCWGG	9 cut(s)	11, 61, 630, 1291, 2025, 2584, 2703, 2796, 2842
PspN4I	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2944, 3214
PspPI	GGNCC	4 cut(s)	110, 1685, 3151, 3212
PspPPI	RGGWCCY	1 cut(s)	1685
PsrI	GAACNNNNNNTAC	4 cut(s)	233, 265, 1321, 1353
PstNI	CAGNNNCTG	1 cut(s)	2546
PsuI	RGATCY	3 cut(s)	704, 1184, 2942
PsyI	GACNNNGTC	1 cut(s)	2960
RseI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3287
SacI	GAGCTC	2 cut(s)	722, 2632
SapI	GCTCTTC	1 cut(s)	2202
SatI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 3003
Sau3AI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2942
Sau96I	GGNCC	4 cut(s)	110, 1685, 3151, 3212
ScaI	AGTACT	2 cut(s)	1955, 2769
SchI	GAGTC	5 cut(s)	1364, 2139, 2945, 3095, 3118
SduI	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 3067, 3189, 3294
SexAI	ACCWGGT	1 cut(s)	2584
SfcI	CTRYAG	2 cut(s)	192, 882
SfuI	TTCGAA	1 cut(s)	943
SinI	GGWCC	3 cut(s)	110, 1685, 3212
SmiI	ATTTAAAT	1 cut(s)	2418
SmiMI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3287
SmlI	CTYRAG	5 cut(s)	753, 2354, 2931, 3126, 3342
SmoI	CTYRAG	5 cut(s)	753, 2354, 2931, 3126, 3342
SnaBI	TACGTA	1 cut(s)	1880
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	5 cut(s)	113, 1447, 2125, 2399, 2898
SspI	AATATT	3 cut(s)	211, 542, 2368
SspMI	CTAG	3 cut(s)	2907, 3068, 3105
SstI	GAGCTC	2 cut(s)	722, 2632
StuI	AGGCCT	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	1011, 1925
SwaI	ATTTAAAT	1 cut(s)	2418
TaqI	TCGA	6 cut(s)	943, 1327, 1373, 2864, 2964, 3078
TaqII	GACCGA	1 cut(s)	1597
TatI	WGTACW	5 cut(s)	1953, 2767, 2773, 3308, 3402
TseFI	GTSAC	2 cut(s)	1149, 3361
TseI	GCWGC	5 cut(s)	188, 638, 1754, 2540, 3002
Tsp45I	GTSAC	2 cut(s)	1149, 3361
TspGWI	ACGGA	2 cut(s)	490, 3248
Tth111I	GACNNNGTC	1 cut(s)	2960
Van91I	CCANNNNNTGG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	2354
VneI	GTGCAC	2 cut(s)	2562, 3290
VpaK11BI	GGWCC	3 cut(s)	110, 1685, 3212
VspI	ATTAAT	2 cut(s)	891, 2694
XapI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3411
XbaI	TCTAGA	1 cut(s)	3067
XceI	RCATGY	3 cut(s)	978, 2344, 3309
XmiI	GTMKAC	1 cut(s)	1729
XmnI	GAANNNNTTC	2 cut(s)	706, 1216
XspI	CTAG	3 cut(s)	2907, 3068, 3105
ZrmI	AGTACT	2 cut(s)	1955, 2769
Zsp2I	ATGCAT	2 cut(s)	735, 3208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.