Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002363

Physical Location & Seq

Genomic Coordinates Forward (+)

5005790 .. 5016074

Gene Structure 10285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3333 bp

ATGGCACCCACCAGGAAAGCTAAAACCGTGAAACGGTATTCAAATTTGAGTGAGGCCTCTCCTGGTGGCAAAAATAAGCAAGGGAAGAGAAAGTTTACCGATCAATTAGGACCGCAGTGGAGCAAGGGAGAGCTTCAGCGATTCTATGAAGCCTACCGGAAATATGGGCAAAATTGGAAGAAGGTGGCTGCTGTAGTGCGCAACAGAAATATTGAGATGGTGGAGGCTCTTTACAATATGAACCGAGCATACTTGTCATTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTTATAGCGATGATGACAGACCACTATAATGTTATGGAAGGCAGTGAAAGTGAACGGGAGAGCAATGATGCTATAAGATATTCCCGGAGACCCCAGAAACGTAAGCTTGGTAAAGATAGCGTCTCAAAAGACGTGTTCCAGTCCCATTCAATGGCTTCAGTAGATGGATGCCTATCATACTTAAAACGGAGAAGACTTGATGGTAATCAGCCTCGTGCAGTTGGGAAGAGGACACCTCGCTTCCCAGTTCAATATTCATCTAAGAAAGATGATGGAGAAAATTATGCTTCTCCAATTAGAAGGGGTCGGAAATCAGAGGCAGATAATGATTATGATGTTGCCCAGGTTGCAGCATTATTGACTGAGGCTTCTCACAGAGGAGGCTCTCCTCAACTTTCTCAAACACCATACAGAAGATCTTCTGGTCAGAGCTCGCAAAGAATGCATCCACCATCAGGGAAAGCTCAAGCCAACCTTCGTGATGCTTCAATGGACGAAGACTGTTTGGAAGGTAGTATAGGAAGTAGAGGGGCTGAAACTGGAGATTATGCCAGAGACAGTAGTTCCTTGATGGACATGGAAGGTGTAGGTACTGTAGAAATTAATAGGAAGGGGAAGAAAGTTTATGGGAAGAAGGAGAAAGTTCAAGACATTCGAAACCATCAATTTGATGATGGTGGTGAAGCATGTAGTGGCACTGAAGGAGGACTAAATGTCAGTGCCAAGGGAAAAGTTGATATTGAAGTTTCAGATGCAAAAGGAGATTGGTTTTCCTCACAAGTTCAAAGGAATGAAAGCAAGAAACTATATTTTGGAGATGATAGCGCAGAACTGGATGCTCTGCAAACTTTGGCTGATTTGTCACTGATGATGCCAGCATCCACAATGGAATCTGGATCCTCTTTGCAGTTGAAGGATGAAAGAACAACTTCTGAAATGGAAGAAAAATCTAATATACCTGAATCCACATCTACCAGCCAATTTAGAAACAAAAATAAACTCCCTGGGGGGAAACATAGAGAACCCATTGCAGATTCTCGAACTGAGGGTACTAATGCCAAAAAGTCCAAATTTGCAAGGGACTCGACACCCATTGATATCAATGTTGTCTCCGAATCAGAACAGCTCCAGCCTACCAATAAATTACTGAAAAGGAGGCGGAAACCCTCAGTGTCAAAGATATTAAATGCCGAAGCAAACGTTGATTCTACTATAAATGAGCCTTCAAATTCCGAGGCTTTTGGTCAAGAAGAGACTAAACCAGTGGTTAAAGGGAAACGTACTGGTCAAATCTCCACTCCTTCAAAACAATGGAAATCGGTCAAACCAGTGGACGGCTCTTTGAATAGTGATTTTGGGCAAACAGTGAGTGATTTAATGCCAGTAACGGCAGAGGGTCCCACTCCAAACCAAGTTCATTCCCCAACTAAACAAAGAAGTAGACGTAAACGGTATCTACCCAGAGCAGCTGTGCCCAAGTCATCTGAGAACATATTAAAAACTCAACTTCATAAACACTCCAACTCAGTGCAGGACAGAGTTCTCTATCTAAAGGAGAAGATGTCTTGTTGCTTGTCATCACATTTGGTACGTAGATGGTGTACGTTTGAGTGGTTTTATAGTGCGATTGATTACCCTTGGTTTGCCAAAAGAGAGTTTGAGGAGTACTTAAATCATGTTGGACTTGGACACATTCCGAGGCTAACTCGCGTTGAATGGGGTGTGATTAGAAGCTCCCTGGGAAAACCTCGGAGGTTTTCTGAGCATTTCCTATGTGAAGAAAGAGAGAAACTTAAACAATATCGGGAATCTGTGAGAAAACATTATGCTGAACTCCGCAGTGGTGTTAGGGAGGGACTCCCAACAGATTTGGCAAGACCTTTATCAGTTGGACAACGTGTCATCGCTCTTCATCCGAAAACAAGAGAAGTTCACGATGGAAGTGTGCTCACCGTTGATCATGATAAGTGCAGGGTTCAGTTTGATCGTCCAGAGATAGGAGTAGAATTCGTCATGGATGTGGATTGTATGCCTTCAAACCCATTGGATAACATGCCAGAAGCACTTAAGAGACAGAATATTGCTTTTGACAAATTCCCTCTCACATTACCCCATCTGAATGGGAATTTAAATTTTGAAAGACCTGTGATGAATGCTTCAAGTGGGCATTTGGAGAAAGAACCCAGCCCCATGAATACTTCCTTACAGCAGGGAAAGGGGGATACAAACCATATAATTTCACAACCAAAAGCAGCATCTGTTGATATTGCTGGTGCACAGACAGCGAGTAGTCAACCTGGTGTGGTGGCACACAATCAAGCAAGGGAAGCTGATATACGAGCTCTTTCAGACCTGAATCGCGCTCTTGATAAAAAGGTTTCTTCTGCTTTGCTTAGTTTGAGGCAACGTAATACCTACCCTGGAAATACCTTGCCTCCTTCGATGAAACACCCAACAAACTCCACTGTCTATGGCGGTCTTCCTAGTTCTTTTGATATATCTATTTCTCAAGAGTCAGGATCCAGCGTTGCTGACATTGTCGAAGTTTCAAGATTGAAAGCACATACATTGGTAAATGCTGCTGTTCAGGCAATGTCATCAAGGAAGGAAGGGGAAGAAGCTTATGTAAGGGTAAGAAGGGCTCTAGATTCCATCGATATTCAGAATATGACATCAGACTCTAGGTCAGCAGTGAGCAGGACTCAAGAGCAGGTCAATGGTAATTTGGGCCATCGCAATCAGTTGATTTCTGGTGCATCAGAGCCCAACCTTAGTAATGATGCATCTGGTCCCAAGTTACATACCGAGACGGATAAAAATGAATCACAGATGCTTTCGGAGGTTATTACTGCTTGTGTCATGGCTGTGCACATGATACAGACATGTACTGAACGACAATATCCTCCGGCTGTTGTGGCTCAAGTATTAGATTATGCAGTCACAAGCTTGCATCCTCGTTGTCCCCAAAATGTTGGAATGTACAGAGAAATTCAAATGTGCATGGGCAGAATCAAGACCCAGATATTAGCACTCGTGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

DIRP Myb_DNA-binding

Protein Analysis

1110

Amino Acids

123.52

Weight (kDa)

9.29

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 80	2.4e-06	Myb-like DNA-binding domain
DIRP	PF06584	634 - 735	1.7e-34	DIRP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610
fragaria_vesca	FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170
malus_domestica	MD04G1203700.v1.1 MD12G1217500.v1.1
prunus_persica	Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1
pyrus_communis	pycom04g18020 pycom12g20300
rosa_chinensis	RchiOBHm_Chr3g0455181
rosa_laevigata	RLG00000025380
rosa_multiflora	Rmu_sc0002169.1_g000028
rosa_roxburghii	Rroxscaffold_6G00424500
rosa_rugosa	Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500
rosa_samantha	Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200
rosa_wichuraiana	Rw3G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	2989
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	1729
AccII	CGCG	2 cut(s)	1998, 2649
AciI	CCGC	4 cut(s)	113, 1447, 2125, 2763
AclI	AACGTT	1 cut(s)	1488
AclWI	GGATC	4 cut(s)	1179, 1192, 2802, 2815
AcsI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3276
AcuI	CTGAAG	3 cut(s)	119, 429, 1008
AfaI	GTAC	8 cut(s)	880, 1339, 1570, 1878, 1891, 1955, 3175, 3269
AfiI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
AflII	CTTAAG	1 cut(s)	2354
AflIII	ACRYGT	3 cut(s)	420, 2185, 3170
AhdI	GACNNNNNGTC	3 cut(s)	1001, 2186, 2971
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	7 cut(s)	11, 61, 630, 1291, 2025, 2584, 2707
Alw21I	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3159
Alw26I	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3089
Alw44I	GTGCAC	2 cut(s)	2562, 3155
AlwI	GGATC	4 cut(s)	1179, 1192, 2802, 2815
AlwNI	CAGNNNCTG	1 cut(s)	2546
AoxI	GGCC	3 cut(s)	54, 286, 3016
ApaLI	GTGCAC	2 cut(s)	2562, 3155
ApeKI	GCWGC	5 cut(s)	188, 638, 1754, 2540, 2867
ApoI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3276
AseI	ATTAAT	1 cut(s)	891
Asp700I	GAANNNNTTC	2 cut(s)	706, 1216
AspLEI	GCGC	3 cut(s)	201, 1115, 2651
AspS9I	GGNCC	4 cut(s)	110, 1685, 3016, 3077
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	980, 2230
AsuII	TTCGAA	1 cut(s)	943
AvaII	GGWCC	3 cut(s)	110, 1685, 3077
BaeGI	GKGCMC	4 cut(s)	272, 1764, 2566, 3159
BamHI	GGATCC	2 cut(s)	1184, 2807
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	4 cut(s)	722, 2632, 2932, 3054
BarI	GAAGNNNNNNTAC	2 cut(s)	2607, 2639
BauI	CACGAG	2 cut(s)	501, 3320
BbsI	GAAGAC	3 cut(s)	487, 792, 2759
Bbv12I	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3159
BbvI	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2854
BceAI	ACGGC	3 cut(s)	288, 1639, 1692
BcgI	CGANNNNNNTGC	2 cut(s)	1353, 1387
BciT130I	CCWGG	7 cut(s)	13, 63, 632, 1293, 2027, 2586, 2709
BciVI	GTATCC	1 cut(s)	2503
BclI	TGATCA	1 cut(s)	2245
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3089
BfaI	CTAG	3 cut(s)	2772, 2933, 2970
BfmI	CTRYAG	2 cut(s)	192, 882
BfrI	CTTAAG	1 cut(s)	2354
BfuAI	ACCTGC	1 cut(s)	2989
BfuI	GTATCC	1 cut(s)	2503
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 2868
BlsI	GCNGC	5 cut(s)	190, 640, 1756, 2542, 2869
BmcAI	AGTACT	1 cut(s)	1955
Bme1390I	CCNGG	8 cut(s)	13, 63, 373, 632, 1293, 2027, 2586, 2709
Bme18I	GGWCC	3 cut(s)	110, 1685, 3077
BmeRI	GACNNNNNGTC	3 cut(s)	1001, 2186, 2971
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	4 cut(s)	110, 1685, 3016, 3077
BmiI	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2809, 3079
BmrFI	CCNGG	8 cut(s)	13, 63, 373, 632, 1293, 2027, 2586, 2709
BmrI	ACTGGG	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	3 cut(s)	487, 792, 2759
BplI	GAGNNNNNCTC	6 cut(s)	508, 540, 1978, 2010, 2974, 3006
BpmI	CTGGAG	2 cut(s)	849, 1400
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	4 cut(s)	738, 2781, 2976, 3192
BpuMI	CCSGG	1 cut(s)	373
Bsa29I	ATCGAT	1 cut(s)	2943
BsaAI	YACGTR	1 cut(s)	1880
BsaBI	GATNNNNATC	2 cut(s)	460, 492
BsaI	GGTCTC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	1835, 1865, 2707, 2737
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
Bse1I	ACTGG	8 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670
Bse3DI	GCAATG	4 cut(s)	257, 358, 1314, 2886
Bse8I	GATNNNNATC	2 cut(s)	460, 492
BseBI	CCWGG	7 cut(s)	13, 63, 632, 1293, 2027, 2586, 2709
BseCI	ATCGAT	1 cut(s)	2943
BseGI	GGATG	8 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 3238
BseJI	GATNNNNATC	2 cut(s)	460, 492
BseLI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
BseMI	GCAATG	4 cut(s)	257, 358, 1314, 2886
BseMII	CTCAG	6 cut(s)	642, 1323, 1470, 1764, 1827, 2040
BseNI	ACTGG	8 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670
BseRI	GAGGAG	3 cut(s)	666, 681, 1964
BseSI	GKGCMC	4 cut(s)	272, 1764, 2566, 3159
BseXI	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2854
BseYI	CCCAGC	1 cut(s)	2471
BsgI	GTGCAG	3 cut(s)	525, 1838, 2278
Bsh1236I	CGCG	2 cut(s)	1998, 2649
BshFI	GGCC	3 cut(s)	56, 288, 3018
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	2943
BsiHKAI	GWGCWC	5 cut(s)	722, 2238, 2566, 2632, 3159
BsiSI	CCGG	3 cut(s)	157, 373, 3194
BslFI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3063, 3234
BslI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1622, 2285
BsmAI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3089
BsmBI	CGTCTC	2 cut(s)	415, 3089
BsmFI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3063, 3234
BsmI	GAATGC	2 cut(s)	735, 2446
BsnI	GGCC	3 cut(s)	56, 288, 3018
Bso31I	GGTCTC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 2932, 3054, 3159
Bsp1407I	TGTACA	1 cut(s)	3267
Bsp143I	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
BspACI	CCGC	4 cut(s)	113, 1447, 2125, 2763
BspANI	GGCC	3 cut(s)	56, 288, 3018
BspCNI	CTCAG	6 cut(s)	643, 1324, 1469, 1765, 1826, 2041
BspDI	ATCGAT	1 cut(s)	2943
BspFNI	CGCG	2 cut(s)	1998, 2649
BspHI	TCATGA	1 cut(s)	2248
BspLI	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2809, 3079
BspMI	ACCTGC	1 cut(s)	2989
BspPI	GGATC	4 cut(s)	1179, 1192, 2802, 2815
BspQI	GCTCTTC	1 cut(s)	2202
BspT104I	TTCGAA	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2354
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	4 cut(s)	257, 358, 1314, 2886
BsrGI	TGTACA	1 cut(s)	3267
BsrI	ACTGG	8 cut(s)	427, 533, 832, 1125, 1550, 1576, 1616, 1670
BssMI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
BssSI	CACGAG	2 cut(s)	501, 3320
BssT1I	CCWWGG	2 cut(s)	1011, 1925
Bst2BI	CACGAG	2 cut(s)	501, 3320
Bst2UI	CCWGG	7 cut(s)	13, 63, 632, 1293, 2027, 2586, 2709
Bst4CI	ACNGT	9 cut(s)	28, 36, 791, 848, 883, 1654, 1740, 2242, 2755
Bst6I	CTCTTC	4 cut(s)	80, 509, 1533, 2202
BstAFI	CTTAAG	1 cut(s)	2354
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstAUI	TGTACA	1 cut(s)	3267
BstBAI	YACGTR	1 cut(s)	1880
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	3 cut(s)	722, 1164, 3236
BstDEI	CTNAG	9 cut(s)	549, 651, 1332, 1456, 1773, 1813, 2049, 2681, 3059
BstF5I	GGATG	8 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 3238
BstFNI	CGCG	2 cut(s)	1998, 2649
BstHHI	GCGC	3 cut(s)	201, 1115, 2651
BstKTI	GATC	6 cut(s)	103, 707, 1187, 2248, 2275, 2810
BstMAI	GTCTC	7 cut(s)	370, 415, 837, 1402, 1535, 2353, 3089
BstMBI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
BstMWI	GCNNNNNNNGC	6 cut(s)	635, 730, 2570, 2615, 2876, 3203
BstNI	CCWGG	7 cut(s)	13, 63, 632, 1293, 2027, 2586, 2709
BstNSI	RCATGY	3 cut(s)	978, 2344, 3174
BstSCI	CCNGG	8 cut(s)	11, 61, 371, 630, 1291, 2025, 2584, 2707
BstSFI	CTRYAG	2 cut(s)	192, 882
BstSLI	GKGCMC	4 cut(s)	272, 1764, 2566, 3159
BstSNI	TACGTA	1 cut(s)	1880
BstUI	CGCG	2 cut(s)	1998, 2649
BstV1I	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2854
BstV2I	GAAGAC	3 cut(s)	487, 792, 2759
BstX2I	RGATCY	3 cut(s)	704, 1184, 2807
BstXI	CCANNNNNNTGG	2 cut(s)	2408, 3260
BstYI	RGATCY	3 cut(s)	704, 1184, 2807
Bsu15I	ATCGAT	1 cut(s)	2943
BsuI	GTATCC	1 cut(s)	2503
BsuRI	GGCC	3 cut(s)	56, 288, 3018
BsuTUI	ATCGAT	1 cut(s)	2943
BtgZI	GCGATG	3 cut(s)	311, 2176, 3005
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	8 cut(s)	461, 733, 1129, 1166, 1210, 2200, 2311, 3238
BtsI	GCAGTG	4 cut(s)	122, 337, 2134, 2985
BveI	ACCTGC	1 cut(s)	2989
Cac8I	GCNNGC	3 cut(s)	722, 1164, 3236
CaiI	CAGNNNCTG	1 cut(s)	2546
CciI	TCATGA	1 cut(s)	2248
CfoI	GCGC	3 cut(s)	201, 1115, 2651
Cfr13I	GGNCC	4 cut(s)	110, 1685, 3016, 3077
ClaI	ATCGAT	1 cut(s)	2943
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	2584
Csp6I	GTAC	8 cut(s)	879, 1338, 1569, 1877, 1890, 1954, 3174, 3268
CviQI	GTAC	8 cut(s)	879, 1338, 1569, 1877, 1890, 1954, 3174, 3268
DdeI	CTNAG	9 cut(s)	549, 651, 1332, 1456, 1773, 1813, 2049, 2681, 3059
DpnI	GATC	6 cut(s)	102, 706, 1186, 2247, 2274, 2809
DpnII	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
DraI	TTTAAA	1 cut(s)	2418
DriI	GACNNNNNGTC	3 cut(s)	1001, 2186, 2971
Eam1104I	CTCTTC	4 cut(s)	80, 509, 1533, 2202
Eam1105I	GACNNNNNGTC	3 cut(s)	1001, 2186, 2971
EarI	CTCTTC	4 cut(s)	80, 509, 1533, 2202
EciI	GGCGGA	1 cut(s)	1462
Ecl136II	GAGCTC	2 cut(s)	720, 2630
Eco105I	TACGTA	1 cut(s)	1880
Eco130I	CCWWGG	2 cut(s)	1011, 1925
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	4 cut(s)	722, 2632, 2932, 3054
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	1387
Eco47I	GGWCC	3 cut(s)	110, 1685, 3077
Eco53kI	GAGCTC	2 cut(s)	720, 2630
Eco57I	CTGAAG	3 cut(s)	119, 429, 1008
EcoICRI	GAGCTC	2 cut(s)	720, 2630
EcoO109I	RGGNCCY	1 cut(s)	1685
EcoRI	GAATTC	1 cut(s)	2294
EcoRII	CCWGG	7 cut(s)	11, 61, 630, 1291, 2025, 2584, 2707
EcoRV	GATATC	1 cut(s)	1387
EcoT14I	CCWWGG	2 cut(s)	1011, 1925
EcoT22I	ATGCAT	2 cut(s)	735, 3073
EcoT38I	GRGCYC	4 cut(s)	722, 2632, 2932, 3054
ErhI	CCWWGG	2 cut(s)	1011, 1925
Esp3I	CGTCTC	2 cut(s)	415, 3089
FalI	AAGNNNNNCTT	4 cut(s)	747, 779, 1201, 1233
FaqI	GGGAC	6 cut(s)	415, 1382, 1671, 2157, 3063, 3234
FbaI	TGATCA	1 cut(s)	2245
FblI	GTMKAC	1 cut(s)	1729
Fnu4HI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 2868
FokI	GGATG	8 cut(s)	468, 720, 1136, 1153, 1217, 2187, 2318, 3225
FriOI	GRGCYC	4 cut(s)	722, 2632, 2932, 3054
Fsp4HI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 2868
FspBI	CTAG	3 cut(s)	2772, 2933, 2970
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	3 cut(s)	200, 1114, 2650
GluI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 2868
GsaI	CCCAGC	1 cut(s)	2475
GsuI	CTGGAG	2 cut(s)	849, 1400
HaeIII	GGCC	3 cut(s)	56, 288, 3018
HapII	CCGG	3 cut(s)	157, 373, 3194
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	3 cut(s)	201, 1115, 2651
Hin6I	GCGC	3 cut(s)	199, 1113, 2649
HinP1I	GCGC	3 cut(s)	199, 1113, 2649
HincII	GTYRAC	1 cut(s)	2582
HindII	GTYRAC	1 cut(s)	2582
HindIII	AAGCTT	3 cut(s)	392, 2907, 3232
HpaII	CCGG	3 cut(s)	157, 373, 3194
HphI	GGTGA	2 cut(s)	980, 2230
HpyCH4III	ACNGT	9 cut(s)	28, 36, 791, 848, 883, 1654, 1740, 2242, 2755
HpyCH4IV	ACGT	9 cut(s)	388, 420, 1488, 1567, 1732, 1879, 1892, 2185, 2695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	635, 730, 2570, 2615, 2876, 3203
HpyF3I	CTNAG	9 cut(s)	549, 651, 1332, 1456, 1773, 1813, 2049, 2681, 3059
HpySE526I	ACGT	9 cut(s)	388, 420, 1488, 1567, 1732, 1879, 1892, 2185, 2695
HspAI	GCGC	3 cut(s)	199, 1113, 2649
KflI	GGGWCCC	1 cut(s)	1685
Ksp22I	TGATCA	1 cut(s)	2245
Kzo9I	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
LguI	GCTCTTC	1 cut(s)	2202
LmnI	GCTCC	3 cut(s)	120, 1419, 2027
Lsp1109I	GCAGC	5 cut(s)	175, 650, 1766, 2552, 2854
MabI	ACCWGGT	1 cut(s)	2584
MaeI	CTAG	3 cut(s)	2772, 2933, 2970
MaeII	ACGT	9 cut(s)	388, 420, 1488, 1567, 1732, 1879, 1892, 2185, 2695
MaeIII	GTNAC	4 cut(s)	1149, 1672, 3084, 3226
MalI	GATC	6 cut(s)	102, 706, 1186, 2247, 2274, 2809
MboI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
MflI	RGATCY	3 cut(s)	704, 1184, 2807
MhlI	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 2932, 3054, 3159
MlyI	GAGTC	5 cut(s)	1364, 2139, 2810, 2960, 2983
MmeI	TCCRAC	5 cut(s)	575, 1833, 1948, 2158, 3241
Mph1103I	ATGCAT	2 cut(s)	735, 3073
MroXI	GAANNNNTTC	2 cut(s)	706, 1216
MslI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3152
MspA1I	CMGCKG	1 cut(s)	1757
MspCI	CTTAAG	1 cut(s)	2354
MspI	CCGG	3 cut(s)	157, 373, 3194
MspR9I	CCNGG	8 cut(s)	13, 63, 373, 632, 1293, 2027, 2586, 2709
Mva1269I	GAATGC	2 cut(s)	735, 2446
MvaI	CCWGG	7 cut(s)	13, 63, 632, 1293, 2027, 2586, 2709
MvnI	CGCG	2 cut(s)	1998, 2649
MwoI	GCNNNNNNNGC	6 cut(s)	635, 730, 2570, 2615, 2876, 3203
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
NlaIV	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2809, 3079
NmuCI	GTSAC	2 cut(s)	1149, 3226
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	735, 3073
NspI	RCATGY	3 cut(s)	978, 2344, 3174
NspV	TTCGAA	1 cut(s)	943
PagI	TCATGA	1 cut(s)	2248
PasI	CCCWGGG	2 cut(s)	1292, 2026
PceI	AGGCCT	1 cut(s)	56
PciI	ACATGT	1 cut(s)	3170
PciSI	GCTCTTC	1 cut(s)	2202
PctI	GAATGC	2 cut(s)	735, 2446
PdmI	GAANNNNTTC	2 cut(s)	706, 1216
PflFI	GACNNNGTC	1 cut(s)	2825
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	5 cut(s)	190, 640, 1756, 2542, 2869
PleI	GAGTC	5 cut(s)	1364, 2139, 2809, 2960, 2983
PpsI	GAGTC	5 cut(s)	1364, 2139, 2809, 2960, 2983
Ppu21I	YACGTR	1 cut(s)	1880
PpuMI	RGGWCCY	1 cut(s)	1685
PscI	ACATGT	1 cut(s)	3170
PshBI	ATTAAT	1 cut(s)	891
Psp124BI	GAGCTC	2 cut(s)	722, 2632
Psp1406I	AACGTT	1 cut(s)	1488
Psp5II	RGGWCCY	1 cut(s)	1685
Psp6I	CCWGG	7 cut(s)	11, 61, 630, 1291, 2025, 2584, 2707
PspFI	CCCAGC	1 cut(s)	2471
PspGI	CCWGG	7 cut(s)	11, 61, 630, 1291, 2025, 2584, 2707
PspN4I	GGNNCC	6 cut(s)	6, 1186, 1686, 1687, 2809, 3079
PspPI	GGNCC	4 cut(s)	110, 1685, 3016, 3077
PspPPI	RGGWCCY	1 cut(s)	1685
PsrI	GAACNNNNNNTAC	4 cut(s)	233, 265, 1321, 1353
PstNI	CAGNNNCTG	1 cut(s)	2546
PsuI	RGATCY	3 cut(s)	704, 1184, 2807
PsyI	GACNNNGTC	1 cut(s)	2825
PvuII	CAGCTG	1 cut(s)	1757
RsaI	GTAC	8 cut(s)	880, 1339, 1570, 1878, 1891, 1955, 3175, 3269
RsaNI	GTAC	8 cut(s)	879, 1338, 1569, 1877, 1890, 1954, 3174, 3268
RseI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3152
SacI	GAGCTC	2 cut(s)	722, 2632
SapI	GCTCTTC	1 cut(s)	2202
SatI	GCNGC	5 cut(s)	189, 639, 1755, 2541, 2868
Sau3AI	GATC	6 cut(s)	100, 704, 1184, 2245, 2272, 2807
Sau96I	GGNCC	4 cut(s)	110, 1685, 3016, 3077
ScaI	AGTACT	1 cut(s)	1955
SchI	GAGTC	5 cut(s)	1364, 2139, 2810, 2960, 2983
ScrFI	CCNGG	8 cut(s)	13, 63, 373, 632, 1293, 2027, 2586, 2709
SduI	GDGCHC	9 cut(s)	272, 722, 1764, 2238, 2566, 2632, 2932, 3054, 3159
SexAI	ACCWGGT	1 cut(s)	2584
SfcI	CTRYAG	2 cut(s)	192, 882
SfuI	TTCGAA	1 cut(s)	943
SinI	GGWCC	3 cut(s)	110, 1685, 3077
SmiI	ATTTAAAT	1 cut(s)	2418
SmiMI	CAYNNNNRTG	4 cut(s)	315, 2306, 2406, 3152
SmlI	CTYRAG	5 cut(s)	753, 2354, 2796, 2991, 3207
SmoI	CTYRAG	5 cut(s)	753, 2354, 2796, 2991, 3207
SnaBI	TACGTA	1 cut(s)	1880
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	4 cut(s)	113, 1447, 2125, 2763
SspI	AATATT	3 cut(s)	211, 542, 2368
SspMI	CTAG	3 cut(s)	2772, 2933, 2970
SstI	GAGCTC	2 cut(s)	722, 2632
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	8 cut(s)	11, 61, 371, 630, 1291, 2025, 2584, 2707
StyI	CCWWGG	2 cut(s)	1011, 1925
SwaI	ATTTAAAT	1 cut(s)	2418
TaaI	ACNGT	9 cut(s)	28, 36, 791, 848, 883, 1654, 1740, 2242, 2755
TaiI	ACGT	9 cut(s)	391, 423, 1491, 1570, 1735, 1882, 1895, 2188, 2698
TaqI	TCGA	6 cut(s)	943, 1327, 1373, 2729, 2829, 2943
TaqII	GACCGA	1 cut(s)	1597
TatI	WGTACW	3 cut(s)	1953, 3173, 3267
TseFI	GTSAC	2 cut(s)	1149, 3226
TseI	GCWGC	5 cut(s)	188, 638, 1754, 2540, 2867
Tsp45I	GTSAC	2 cut(s)	1149, 3226
TspGWI	ACGGA	2 cut(s)	490, 3113
Tth111I	GACNNNGTC	1 cut(s)	2825
Van91I	CCANNNNNTGG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	2354
VneI	GTGCAC	2 cut(s)	2562, 3155
VpaK11BI	GGWCC	3 cut(s)	110, 1685, 3077
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	8 cut(s)	43, 1358, 1516, 2294, 2381, 2413, 2419, 3276
XbaI	TCTAGA	1 cut(s)	2932
XceI	RCATGY	3 cut(s)	978, 2344, 3174
XmiI	GTMKAC	1 cut(s)	1729
XmnI	GAANNNNTTC	2 cut(s)	706, 1216
XspI	CTAG	3 cut(s)	2772, 2933, 2970
ZrmI	AGTACT	1 cut(s)	1955
Zsp2I	ATGCAT	2 cut(s)	735, 3073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.