Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002363

Physical Location & Seq

Genomic Coordinates Forward (+)

4527652 .. 4538508

Gene Structure 10857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2799 bp

ATGGCACCCACCAGAAAAGCTAAGACCGTGAAACGGTATTCAAATTTGAGTGAGGCCTCTCCTGGTGGCAAAAATAAGCAAGGGAAGAGAAAGTTTACCGATCAATTAGGACCGCAGTGGAGCAAGGGAGAGCTTCAGCGATTCTATGAAGCCTACCGGAAATATGGGCAAAATTGGAAGAAGGTGGCTGCTGTAGTGCGCAACAGAAATATTGAGATGGTGGAGGCTCTTTACAATATGAACCGAGCCTACTTGTCATTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTTATAGCGATGATGACAGACCACTATAATGTTATGGAAGGCAGTGAAAGTGAACGGGAGAGCAATGATGCTATAAGATATTCCCGGAGACCCCAGAAACGTAAGCTTGGTAAAGATAGCGTCTCAAAAGACGTGTTCCAGTCCCATTCAATGGCTTCAGTAGATGGATGCCTATCATACTTAAAACGGAGAAGACTTGATGGTAATCAGCCTCGTGCAGTTGGGAAGAGGACACCTCGCTTCCCAGTTCAATATTCATCTAAGAAAGATGATGGAGTAAATTATTCTTCTCCAATTAGAAGGGGTCGGAAATCAGAGGCAGATAATGATTATGATGTTGCCCAGGTTGCAGCATTATTGACTGAGGCTTCTCACAGAGGAGGCTCTCCTCAACTTTCTCAAACACCATACAGAAGATCTTCTGGTCAGAGCTTGCAAAGAATGCATCCACCGTCAGGGAAAGCTCAAGCCAACCTTCGTGATGCTTCAATGGACGAAGACTGTTTGGAAGGTAGTATAGGAAGTAGAGGGGCTGAAACTGGAGATTATGCCAGAGACAGTAGTTCCTTGATGGACATGGAAGGTGTAGGTACTGTAGAAATTAATAGGAAGGGGAAGAAAGTTTATGGAAAGAAAGAGAAAGTTAAAGACATTCGAAACCATCAATTTGATGATGGTGGTGAAGCATGTAGTGGCACTGAAGGAGGACTTAATGTCAGTGCCAAGGGAAAAGTTGATATTGAAGTTTCAGATGCAAAAGGAGATTGGTTTTCCTCACAAGTTCAAAGGAATGAAAGCAAGAAACTATATTTTGGAGATGATAGCGCAGAACTGGATGCTCTGCAAACTTTGGCTGATTTGTCACTGATGATGCCGGCATCCACAATGGAATCTGGATCCTCTTTGCAGTTGAAGGATGAAAGAACAACTTCTGAAATGGAAGAAAAATCTAATATACCTGAATCCACATCTACCAGCCAATTTAGAAACAAAAATAAACTCCCTGGGGGGAAACAGAGAGAACCCGTTGCAGATTCTCGAACTGAGGGTACTAATGCCAAAAAGTCCAAATTTGCAAGGGACTCGACACCCATTGATATCAATGTTGTCTCCGAATCAGAACAGCTCCAGCCTACCAATAAATTACTGAAAAGGAAGCGGAAACCCTCAGTGTCAAAGGTAAACATAGAAATGAAGATATTAAATGCCGAAGCAAATGTTGATTCTACTATAAATGAGCCTTCAAATTCCGAGGCTTTTGGTCAAGAAGAGACTAAACCAGTGGTTAAAGGGAAACGTACTGGTCAAATCTCCACTCCTTCAAAACAATGGAAATCAGTCAAACCAGTGGACGGCTCTTTGAATAGTGATTTTGGGCAAACAGTGAGTGATTTAATGGCAGTAACGGCAGAGGGTCCCACTGCAAACCAAGTTCATTCCCCAACTAAACAAAGAAGTAGACGTAAACGGTATCTACCCAGAGCAGCAGTGCCCAAGTCATCTGAGAACATATTAAAAACTCAACTTCATAAACACTCCAACTCAGTGCAGGACAGAGTTCTCTATCTAAAGGAGAAGATGTCTTGTTGCTTGTCATCACATTTGGTACGTAGATGGTGTACGTTTGAGTGGTTTTATAGTGCGATTGATTACCCTTGGTTTGCCAAAAGAGAGTTTGAGGAGTACTTAAATCATGTTGGACTTGGACACATTCCGAGGCTAACTCGTGTTGAATGGGGTGTGATTAGAAGCTCCCTGGGAAAACCTCGGAGGTTTTCTGAGCATTTCCTATGTGAAGAAAGAGAGAAACTTAAACAATATCGGGAATCTGTGAGAAAACATTATGCTGAACTCCGCAGTGGTGTTAGGGAGGGACTCCCAACAGATTTGGCAAGACCTTTATCAGTTGGACAACGTGTCATCGCTCTTCATCCGAAAACAAGAGAAGTTCACGATGGAAGTGTGCTCACCGTTGATCATGATAAGTGCAGGGTTCAGTTTGATCGTCCAGAGATAGGAGTTGAATTCGTCATGGATGTGGATTGTATGCCTTCAAACCCATTGGATAACATGCCAGAAGCACTTAAGAGACAGAATATTGCTTTTGACAAATTCCCTCTCACATTACCCCATCTGAATGGGAATTTAAATTTTGAAAGACCTGTGATGAATGCTTCAAGTGGGCATTTGGAGAAAGAACCCAGCCCCATGAATAGTTCCTTACAGCAGGGAAAGGGGGATACAAACCATATAATTTCACAACCAAAAGCAGCATCTGTTGATATTGCTGGTGCACAGACAGCGAGTAGTCAACCTGGTGTGGTGGCACACAATCAAGCAAGGGAAGCTGATATACGAGCTCTTTCAGACCTGAATCGCGCTCTTGATAAAAAGGTTATTATCCTTGTATCCCTGCAGTTGATTATAAATGTACAAAATTTTAATATTAAAATTTTGTGTTGTATTAGATTTGGGTTGGCAATGGTGCTAAACTATGCACTTTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

DIRP Myb_DNA-binding

Protein Analysis

932

Amino Acids

104.25

Weight (kDa)

9.43

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 80	1.9e-06	Myb-like DNA-binding domain
DIRP	PF06584	640 - 741	1.3e-34	DIRP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610
fragaria_vesca	FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170
malus_domestica	MD04G1203700.v1.1 MD12G1217500.v1.1
prunus_persica	Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1
pyrus_communis	pycom04g18020 pycom12g20300
rosa_chinensis	RchiOBHm_Chr3g0455181
rosa_laevigata	RLG00000025380
rosa_multiflora	Rmu_sc0002169.1_g000028
rosa_roxburghii	Rroxscaffold_6G00424500
rosa_rugosa	Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500
rosa_samantha	Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200
rosa_wichuraiana	Rw3G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2714
Acc16I	TGCGCA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	1747
AccII	CGCG	1 cut(s)	2667
AciI	CCGC	3 cut(s)	113, 1447, 2143
AclWI	GGATC	2 cut(s)	1179, 1192
AcsI	RAATTY	9 cut(s)	43, 1358, 1534, 2312, 2399, 2431, 2437, 2725, 2739
AcuI	CTGAAG	3 cut(s)	119, 429, 1008
AfaI	GTAC	7 cut(s)	880, 1339, 1588, 1896, 1909, 1973, 2721
AfiI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1640, 2303
AflII	CTTAAG	1 cut(s)	2372
AflIII	ACRYGT	2 cut(s)	420, 2203
AhdI	GACNNNNNGTC	2 cut(s)	1001, 2204
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	5 cut(s)	61, 630, 1291, 2043, 2602
AluBI	AGCT	9 cut(s)	20, 133, 394, 720, 752, 1414, 2040, 2636, 2648
AluI	AGCT	9 cut(s)	20, 133, 394, 720, 752, 1414, 2040, 2636, 2648
Alw21I	GWGCWC	3 cut(s)	2256, 2584, 2650
Alw26I	GTCTC	6 cut(s)	370, 415, 837, 1402, 1553, 2371
Alw44I	GTGCAC	1 cut(s)	2580
AlwI	GGATC	2 cut(s)	1179, 1192
AlwNI	CAGNNNCTG	1 cut(s)	2564
AoxI	GGCC	2 cut(s)	54, 286
ApaLI	GTGCAC	1 cut(s)	2580
ApeKI	GCWGC	4 cut(s)	188, 638, 1772, 2558
ApoI	RAATTY	9 cut(s)	43, 1358, 1534, 2312, 2399, 2431, 2437, 2725, 2739
AseI	ATTAAT	1 cut(s)	891
Asp700I	GAANNNNTTC	2 cut(s)	706, 1216
AspLEI	GCGC	3 cut(s)	201, 1115, 2669
AspS9I	GGNCC	2 cut(s)	110, 1703
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	980, 2248
AsuII	TTCGAA	1 cut(s)	943
AvaII	GGWCC	2 cut(s)	110, 1703
BaeGI	GKGCMC	3 cut(s)	272, 1782, 2584
BamHI	GGATCC	1 cut(s)	1184
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	2650
BarI	GAAGNNNNNNTAC	2 cut(s)	2625, 2657
BauI	CACGAG	2 cut(s)	501, 2013
BbsI	GAAGAC	2 cut(s)	487, 792
Bbv12I	GWGCWC	3 cut(s)	2256, 2584, 2650
BbvI	GCAGC	4 cut(s)	175, 650, 1784, 2570
BceAI	ACGGC	3 cut(s)	288, 1657, 1710
BcgI	CGANNNNNNTGC	2 cut(s)	1353, 1387
BciT130I	CCWGG	5 cut(s)	63, 632, 1293, 2045, 2604
BciVI	GTATCC	2 cut(s)	2521, 2707
BclI	TGATCA	1 cut(s)	2263
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	6 cut(s)	370, 415, 837, 1402, 1553, 2371
BfmI	CTRYAG	3 cut(s)	192, 882, 2702
BfrI	CTTAAG	1 cut(s)	2372
BfuI	GTATCC	2 cut(s)	2521, 2707
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	4 cut(s)	189, 639, 1773, 2559
BlsI	GCNGC	4 cut(s)	190, 640, 1774, 2560
BmcAI	AGTACT	1 cut(s)	1973
Bme1390I	CCNGG	6 cut(s)	63, 373, 632, 1293, 2045, 2604
Bme18I	GGWCC	2 cut(s)	110, 1703
BmeRI	GACNNNNNGTC	2 cut(s)	1001, 2204
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	110, 1703
BmiI	GGNNCC	4 cut(s)	6, 1186, 1704, 1705
BmrFI	CCNGG	6 cut(s)	63, 373, 632, 1293, 2045, 2604
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	9 cut(s)	346, 446, 742, 760, 1030, 1114, 1149, 1175, 2570
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	487, 792
BplI	GAGNNNNNCTC	4 cut(s)	508, 540, 1996, 2028
BpmI	CTGGAG	2 cut(s)	849, 1400
Bpu14I	TTCGAA	1 cut(s)	943
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	1898
BsaBI	GATNNNNATC	2 cut(s)	460, 492
BsaI	GGTCTC	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	1853, 1883
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1640, 2303
Bse118I	RCCGGY	1 cut(s)	1162
Bse1I	ACTGG	7 cut(s)	427, 533, 832, 1125, 1568, 1594, 1634
Bse3DI	GCAATG	3 cut(s)	257, 358, 2775
Bse8I	GATNNNNATC	2 cut(s)	460, 492
BseBI	CCWGG	5 cut(s)	63, 632, 1293, 2045, 2604
BseGI	GGATG	7 cut(s)	461, 733, 1129, 1166, 1210, 2218, 2329
BseJI	GATNNNNATC	2 cut(s)	460, 492
BseLI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1640, 2303
BseMI	GCAATG	3 cut(s)	257, 358, 2775
BseMII	CTCAG	6 cut(s)	642, 1323, 1470, 1782, 1845, 2058
BseNI	ACTGG	7 cut(s)	427, 533, 832, 1125, 1568, 1594, 1634
BseRI	GAGGAG	3 cut(s)	666, 681, 1982
BseSI	GKGCMC	3 cut(s)	272, 1782, 2584
BseXI	GCAGC	4 cut(s)	175, 650, 1784, 2570
BseYI	CCCAGC	1 cut(s)	2489
BsgI	GTGCAG	3 cut(s)	525, 1856, 2296
Bsh1236I	CGCG	1 cut(s)	2667
BshFI	GGCC	2 cut(s)	56, 288
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	3 cut(s)	2256, 2584, 2650
BsiSI	CCGG	3 cut(s)	157, 373, 1163
BslFI	GGGAC	4 cut(s)	415, 1382, 1689, 2175
BslI	CCNNNNNNNGG	5 cut(s)	33, 439, 743, 1640, 2303
BsmAI	GTCTC	6 cut(s)	370, 415, 837, 1402, 1553, 2371
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	4 cut(s)	415, 1382, 1689, 2175
BsmI	GAATGC	2 cut(s)	735, 2464
BsnI	GGCC	2 cut(s)	56, 288
Bso31I	GGTCTC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	943
Bsp1286I	GDGCHC	5 cut(s)	272, 1782, 2256, 2584, 2650
Bsp1407I	TGTACA	1 cut(s)	2719
Bsp143I	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
BspACI	CCGC	3 cut(s)	113, 1447, 2143
BspANI	GGCC	2 cut(s)	56, 288
BspCNI	CTCAG	6 cut(s)	643, 1324, 1469, 1783, 1844, 2059
BspFNI	CGCG	1 cut(s)	2667
BspHI	TCATGA	1 cut(s)	2266
BspLI	GGNNCC	4 cut(s)	6, 1186, 1704, 1705
BspMAI	CTGCAG	1 cut(s)	2706
BspPI	GGATC	2 cut(s)	1179, 1192
BspQI	GCTCTTC	1 cut(s)	2220
BspT104I	TTCGAA	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2372
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	3 cut(s)	257, 358, 2775
BsrFI	RCCGGY	1 cut(s)	1162
BsrGI	TGTACA	1 cut(s)	2719
BsrI	ACTGG	7 cut(s)	427, 533, 832, 1125, 1568, 1594, 1634
BssAI	RCCGGY	1 cut(s)	1162
BssMI	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
BssSI	CACGAG	2 cut(s)	501, 2013
BssT1I	CCWWGG	2 cut(s)	1011, 1943
Bst2BI	CACGAG	2 cut(s)	501, 2013
Bst2UI	CCWGG	5 cut(s)	63, 632, 1293, 2045, 2604
Bst4CI	ACNGT	9 cut(s)	28, 36, 741, 791, 848, 883, 1672, 1758, 2260
Bst6I	CTCTTC	4 cut(s)	80, 509, 1551, 2220
BstAFI	CTTAAG	1 cut(s)	2372
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstAUI	TGTACA	1 cut(s)	2719
BstBAI	YACGTR	1 cut(s)	1898
BstBI	TTCGAA	1 cut(s)	943
BstC8I	GCNNGC	2 cut(s)	722, 1164
BstDEI	CTNAG	8 cut(s)	21, 549, 651, 1332, 1456, 1791, 1831, 2067
BstF5I	GGATG	7 cut(s)	461, 733, 1129, 1166, 1210, 2218, 2329
BstFNI	CGCG	1 cut(s)	2667
BstHHI	GCGC	3 cut(s)	201, 1115, 2669
BstKTI	GATC	5 cut(s)	103, 707, 1187, 2266, 2293
BstMAI	GTCTC	6 cut(s)	370, 415, 837, 1402, 1553, 2371
BstMBI	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
BstMWI	GCNNNNNNNGC	5 cut(s)	635, 730, 1694, 2588, 2633
BstNI	CCWGG	5 cut(s)	63, 632, 1293, 2045, 2604
BstNSI	RCATGY	2 cut(s)	978, 2362
BstSCI	CCNGG	6 cut(s)	61, 371, 630, 1291, 2043, 2602
BstSFI	CTRYAG	3 cut(s)	192, 882, 2702
BstSLI	GKGCMC	3 cut(s)	272, 1782, 2584
BstSNI	TACGTA	1 cut(s)	1898
BstUI	CGCG	1 cut(s)	2667
BstV1I	GCAGC	4 cut(s)	175, 650, 1784, 2570
BstV2I	GAAGAC	2 cut(s)	487, 792
BstX2I	RGATCY	2 cut(s)	704, 1184
BstXI	CCANNNNNNTGG	1 cut(s)	2426
BstYI	RGATCY	2 cut(s)	704, 1184
BsuI	GTATCC	2 cut(s)	2521, 2707
BsuRI	GGCC	2 cut(s)	56, 288
BtgZI	GCGATG	2 cut(s)	311, 2194
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	7 cut(s)	461, 733, 1129, 1166, 1210, 2218, 2329
BtsI	GCAGTG	5 cut(s)	122, 337, 1707, 1782, 2152
Cac8I	GCNNGC	2 cut(s)	722, 1164
CaiI	CAGNNNCTG	1 cut(s)	2564
CciI	TCATGA	1 cut(s)	2266
CfoI	GCGC	3 cut(s)	201, 1115, 2669
Cfr10I	RCCGGY	1 cut(s)	1162
Cfr13I	GGNCC	2 cut(s)	110, 1703
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	2602
Csp6I	GTAC	7 cut(s)	879, 1338, 1587, 1895, 1908, 1972, 2720
CviAII	CATG	7 cut(s)	865, 975, 1982, 2267, 2320, 2359, 2497
CviQI	GTAC	7 cut(s)	879, 1338, 1587, 1895, 1908, 1972, 2720
DdeI	CTNAG	8 cut(s)	21, 549, 651, 1332, 1456, 1791, 1831, 2067
DpnI	GATC	5 cut(s)	102, 706, 1186, 2265, 2292
DpnII	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
DraI	TTTAAA	1 cut(s)	2436
DriI	GACNNNNNGTC	2 cut(s)	1001, 2204
Eam1104I	CTCTTC	4 cut(s)	80, 509, 1551, 2220
Eam1105I	GACNNNNNGTC	2 cut(s)	1001, 2204
EarI	CTCTTC	4 cut(s)	80, 509, 1551, 2220
Ecl136II	GAGCTC	1 cut(s)	2648
Eco105I	TACGTA	1 cut(s)	1898
Eco130I	CCWWGG	2 cut(s)	1011, 1943
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	2650
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	1387
Eco47I	GGWCC	2 cut(s)	110, 1703
Eco53kI	GAGCTC	1 cut(s)	2648
Eco57I	CTGAAG	3 cut(s)	119, 429, 1008
EcoICRI	GAGCTC	1 cut(s)	2648
EcoO109I	RGGNCCY	1 cut(s)	1703
EcoRI	GAATTC	1 cut(s)	2312
EcoRII	CCWGG	5 cut(s)	61, 630, 1291, 2043, 2602
EcoRV	GATATC	1 cut(s)	1387
EcoT14I	CCWWGG	2 cut(s)	1011, 1943
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	2650
ErhI	CCWWGG	2 cut(s)	1011, 1943
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	7 cut(s)	868, 978, 1985, 2270, 2323, 2362, 2500
FalI	AAGNNNNNCTT	6 cut(s)	747, 779, 981, 1013, 1201, 1233
FaqI	GGGAC	4 cut(s)	415, 1382, 1689, 2175
FatI	CATG	7 cut(s)	864, 974, 1981, 2266, 2319, 2358, 2496
FbaI	TGATCA	1 cut(s)	2263
FblI	GTMKAC	1 cut(s)	1747
Fnu4HI	GCNGC	4 cut(s)	189, 639, 1773, 2559
FokI	GGATG	7 cut(s)	468, 720, 1136, 1153, 1217, 2205, 2336
FriOI	GRGCYC	1 cut(s)	2650
Fsp4HI	GCNGC	4 cut(s)	189, 639, 1773, 2559
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	3 cut(s)	200, 1114, 2668
GluI	GCNGC	4 cut(s)	189, 639, 1773, 2559
GsaI	CCCAGC	1 cut(s)	2493
GsuI	CTGGAG	2 cut(s)	849, 1400
HaeIII	GGCC	2 cut(s)	56, 288
HapII	CCGG	3 cut(s)	157, 373, 1163
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	3 cut(s)	201, 1115, 2669
Hin1II	CATG	7 cut(s)	868, 978, 1985, 2270, 2323, 2362, 2500
Hin6I	GCGC	3 cut(s)	199, 1113, 2667
HinP1I	GCGC	3 cut(s)	199, 1113, 2667
HincII	GTYRAC	1 cut(s)	2600
HindII	GTYRAC	1 cut(s)	2600
HindIII	AAGCTT	1 cut(s)	392
HpaII	CCGG	3 cut(s)	157, 373, 1163
HphI	GGTGA	2 cut(s)	980, 2248
Hpy188III	TCNNGA	9 cut(s)	767, 1182, 1326, 1553, 2111, 2240, 2267, 2297, 2672
HpyCH4III	ACNGT	9 cut(s)	28, 36, 741, 791, 848, 883, 1672, 1758, 2260
HpyCH4IV	ACGT	7 cut(s)	388, 420, 1585, 1750, 1897, 1910, 2203
HpyF10VI	GCNNNNNNNGC	5 cut(s)	635, 730, 1694, 2588, 2633
HpyF3I	CTNAG	8 cut(s)	21, 549, 651, 1332, 1456, 1791, 1831, 2067
HpySE526I	ACGT	7 cut(s)	388, 420, 1585, 1750, 1897, 1910, 2203
Hsp92II	CATG	7 cut(s)	868, 978, 1985, 2270, 2323, 2362, 2500
HspAI	GCGC	3 cut(s)	199, 1113, 2667
KflI	GGGWCCC	1 cut(s)	1703
KroI	GCCGGC	1 cut(s)	1162
KroNI	GCCGGC	1 cut(s)	1164
Ksp22I	TGATCA	1 cut(s)	2263
Kzo9I	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
LguI	GCTCTTC	1 cut(s)	2220
LmnI	GCTCC	3 cut(s)	120, 1419, 2045
Lsp1109I	GCAGC	4 cut(s)	175, 650, 1784, 2570
LweI	GCATC	9 cut(s)	346, 446, 742, 760, 1030, 1114, 1149, 1175, 2570
MabI	ACCWGGT	1 cut(s)	2602
MaeII	ACGT	7 cut(s)	388, 420, 1585, 1750, 1897, 1910, 2203
MaeIII	GTNAC	2 cut(s)	1149, 1690
MalI	GATC	5 cut(s)	102, 706, 1186, 2265, 2292
MboI	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
MflI	RGATCY	2 cut(s)	704, 1184
MhlI	GDGCHC	5 cut(s)	272, 1782, 2256, 2584, 2650
MlyI	GAGTC	2 cut(s)	1364, 2157
MmeI	TCCRAC	4 cut(s)	575, 1851, 1966, 2176
Mph1103I	ATGCAT	1 cut(s)	735
MroNI	GCCGGC	1 cut(s)	1162
MroXI	GAANNNNTTC	2 cut(s)	706, 1216
MslI	CAYNNNNRTG	4 cut(s)	315, 1478, 2324, 2424
MspCI	CTTAAG	1 cut(s)	2372
MspI	CCGG	3 cut(s)	157, 373, 1163
MspR9I	CCNGG	6 cut(s)	63, 373, 632, 1293, 2045, 2604
Mva1269I	GAATGC	2 cut(s)	735, 2464
MvaI	CCWGG	5 cut(s)	63, 632, 1293, 2045, 2604
MvnI	CGCG	1 cut(s)	2667
MwoI	GCNNNNNNNGC	5 cut(s)	635, 730, 1694, 2588, 2633
NaeI	GCCGGC	1 cut(s)	1164
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
NgoMIV	GCCGGC	1 cut(s)	1162
NlaIII	CATG	7 cut(s)	868, 978, 1985, 2270, 2323, 2362, 2500
NlaIV	GGNNCC	4 cut(s)	6, 1186, 1704, 1705
NmuCI	GTSAC	1 cut(s)	1149
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	2 cut(s)	978, 2362
NspV	TTCGAA	1 cut(s)	943
PagI	TCATGA	1 cut(s)	2266
PasI	CCCWGGG	2 cut(s)	1292, 2044
PceI	AGGCCT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	2220
PctI	GAATGC	2 cut(s)	735, 2464
PdiI	GCCGGC	1 cut(s)	1164
PdmI	GAANNNNTTC	2 cut(s)	706, 1216
PfeI	GAWTC	8 cut(s)	141, 1178, 1250, 1322, 1403, 1511, 2114, 2662
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	190, 640, 1774, 2560
PleI	GAGTC	2 cut(s)	1364, 2157
PpsI	GAGTC	2 cut(s)	1364, 2157
Ppu21I	YACGTR	1 cut(s)	1898
PpuMI	RGGWCCY	1 cut(s)	1703
PshBI	ATTAAT	1 cut(s)	891
PsiI	TTATAA	1 cut(s)	2714
Psp124BI	GAGCTC	1 cut(s)	2650
Psp5II	RGGWCCY	1 cut(s)	1703
Psp6I	CCWGG	5 cut(s)	61, 630, 1291, 2043, 2602
PspFI	CCCAGC	1 cut(s)	2489
PspGI	CCWGG	5 cut(s)	61, 630, 1291, 2043, 2602
PspN4I	GGNNCC	4 cut(s)	6, 1186, 1704, 1705
PspPI	GGNCC	2 cut(s)	110, 1703
PspPPI	RGGWCCY	1 cut(s)	1703
PsrI	GAACNNNNNNTAC	4 cut(s)	233, 265, 1321, 1353
PstI	CTGCAG	1 cut(s)	2706
PstNI	CAGNNNCTG	1 cut(s)	2564
PsuI	RGATCY	2 cut(s)	704, 1184
RsaI	GTAC	7 cut(s)	880, 1339, 1588, 1896, 1909, 1973, 2721
RsaNI	GTAC	7 cut(s)	879, 1338, 1587, 1895, 1908, 1972, 2720
RseI	CAYNNNNRTG	4 cut(s)	315, 1478, 2324, 2424
SacI	GAGCTC	1 cut(s)	2650
SapI	GCTCTTC	1 cut(s)	2220
SatI	GCNGC	4 cut(s)	189, 639, 1773, 2559
Sau3AI	GATC	5 cut(s)	100, 704, 1184, 2263, 2290
Sau96I	GGNCC	2 cut(s)	110, 1703
ScaI	AGTACT	1 cut(s)	1973
SchI	GAGTC	2 cut(s)	1364, 2157
ScrFI	CCNGG	6 cut(s)	63, 373, 632, 1293, 2045, 2604
SduI	GDGCHC	5 cut(s)	272, 1782, 2256, 2584, 2650
SexAI	ACCWGGT	1 cut(s)	2602
SfaNI	GCATC	9 cut(s)	346, 446, 742, 760, 1030, 1114, 1149, 1175, 2570
SfcI	CTRYAG	3 cut(s)	192, 882, 2702
SfuI	TTCGAA	1 cut(s)	943
SinI	GGWCC	2 cut(s)	110, 1703
SmiI	ATTTAAAT	1 cut(s)	2436
SmiMI	CAYNNNNRTG	4 cut(s)	315, 1478, 2324, 2424
SmlI	CTYRAG	2 cut(s)	753, 2372
SmoI	CTYRAG	2 cut(s)	753, 2372
SnaBI	TACGTA	1 cut(s)	1898
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	113, 1447, 2143
SspI	AATATT	4 cut(s)	211, 542, 2386, 2734
SstI	GAGCTC	1 cut(s)	2650
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	6 cut(s)	61, 371, 630, 1291, 2043, 2602
StyI	CCWWGG	2 cut(s)	1011, 1943
SwaI	ATTTAAAT	1 cut(s)	2436
TaaI	ACNGT	9 cut(s)	28, 36, 741, 791, 848, 883, 1672, 1758, 2260
TaiI	ACGT	7 cut(s)	391, 423, 1588, 1753, 1900, 1913, 2206
TaqI	TCGA	3 cut(s)	943, 1327, 1373
TatI	WGTACW	2 cut(s)	1971, 2719
TfiI	GAWTC	8 cut(s)	141, 1178, 1250, 1322, 1403, 1511, 2114, 2662
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	4 cut(s)	188, 638, 1772, 2558
Tsp45I	GTSAC	1 cut(s)	1149
TspGWI	ACGGA	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	439
Vha464I	CTTAAG	1 cut(s)	2372
VneI	GTGCAC	1 cut(s)	2580
VpaK11BI	GGWCC	2 cut(s)	110, 1703
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	9 cut(s)	43, 1358, 1534, 2312, 2399, 2431, 2437, 2725, 2739
XceI	RCATGY	2 cut(s)	978, 2362
XmiI	GTMKAC	1 cut(s)	1747
XmnI	GAANNNNTTC	2 cut(s)	706, 1216
ZrmI	AGTACT	1 cut(s)	1973
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.