Rorug03G0004500
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002363
Physical Location & Seq
Reverse (-)
354387 .. 356046
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0004500.1

Sequence Viewer

Length: 951 bp
ATGATGATGATCATGATGATGAATAGCTGCTGCACTACTGGTACTAGTGCTACTACTTTCACTGCGCTCCTTGCAGCAACAACCACTACCACCAGCTGCTGCCTTCGCCGCCGCGAAAGCAAAACTACTACTGCTGCTAGTAGTAAATCTATATTTTTCATCTCCAAGTACTCCAAGCCTTTTAGTACTGCGTCTTCCTCCCAAGATTCACACCATGTCCACCACCCTTTTTTACTGCGCGAATATCTAAGATCAGAGGCTGATAGAATTGTGGATGGCTTGAACTTTGGGGAGCTTTGCGACGAGTTTGAGTGCATTAGCAGCCCCTTGGTGGAGGCCACTGCTCGACAGCTTGTCCGCGACATCCTTGAGCTTCGGGAAGGCAATCGCGCCCTTGGAACCTTTGCTCTTTCGGTTCAATACAAGGACCCCGTCAGAAGTTTTAGTGGTCGTGACAAGTACAAGAGACCACTATGGATAACCACCGCACTAGAGAAGCCTTCTGTGAGTGTTCAAGAAATGAGCATGTTATCGACCAGAGTGCTTAGTATAAAATGGACAATCAAAGGCAAGCCCAAGAACATTCTAGGAGGAGATTTGATTCTAAAAATCAACTCCCAATTCACTCTGAATCAGATCAGTGGCCAAGTGACTCGACATGAAGAGTTTTGGGATTTATCAGCTTCTTCATTCATTTCACAAGCCTATTTCTGGACCTCGCGTCGTCTGTTTGCAACAATTGAGGGTGGAAAAGACTTGACTGATGCAGTTAAAAGTCTTTCCAACCGCTTCCCAACAGAAAAACAGAACATGGACATTTTTCCAGACCCTTATGGTGATCCAACTAAGTTCTTTCAAAGGGACGACGGTTTCCAAAGAGATGTGTATCAAATTGCTCTGTTCCTGGCACTTGTTTATTTTGTTGTACAACTTTTGAGAACAACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

316

Amino Acids

35.82

Weight (kDa)

8.97

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 135 - 220 4e-06 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 114, 240, 360, 390, 721
AciI CCGC 5 cut(s) 109, 112, 358, 486, 787
AclWI GGATC 1 cut(s) 833
AcoI YGGCCR 1 cut(s) 643
AfaI GTAC 5 cut(s) 43, 170, 187, 461, 927
AfiI CCNNNNNNNGG 2 cut(s) 331, 711
AgsI TTSAA 4 cut(s) 283, 419, 515, 857
AhdI GACNNNNNGTC 2 cut(s) 353, 720
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 903
AluBI AGCT 6 cut(s) 27, 96, 295, 352, 373, 683
AluI AGCT 6 cut(s) 27, 96, 295, 352, 373, 683
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 833
AlwNI CAGNNNCTG 2 cut(s) 99, 260
AoxI GGCC 2 cut(s) 336, 643
ApeKI GCWGC 7 cut(s) 27, 30, 74, 96, 99, 134, 321
AspLEI GCGC 3 cut(s) 67, 240, 392
AspS9I GGNCC 2 cut(s) 427, 714
AsuHPI GGTGA 1 cut(s) 848
AvaII GGWCC 2 cut(s) 427, 714
BalI TGGCCA 1 cut(s) 645
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 7 cut(s) 14, 17, 83, 86, 86, 121, 333
BccI CCATC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 1 cut(s) 905
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 460
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 4 cut(s) 45, 138, 491, 587
BisI GCNGC 9 cut(s) 28, 31, 75, 97, 100, 109, 112, 135, 322
BlsI GCNGC 9 cut(s) 29, 32, 76, 98, 101, 110, 113, 136, 323
BmcAI AGTACT 2 cut(s) 170, 187
Bme1390I CCNGG 1 cut(s) 905
Bme18I GGWCC 2 cut(s) 427, 714
BmeRI GACNNNNNGTC 2 cut(s) 353, 720
BmgT120I GGNCC 2 cut(s) 427, 714
BmiI GGNNCC 2 cut(s) 400, 429
BmrFI CCNGG 1 cut(s) 905
BmsI GCATC 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 389
BsaBI GATNNNNATC 2 cut(s) 8, 885
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 327, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 711
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 8, 885
BseBI CCWGG 1 cut(s) 905
BseDI CCNNGG 2 cut(s) 327, 394
BseGI GGATG 2 cut(s) 280, 363
BseJI GATNNNNATC 2 cut(s) 8, 885
BseLI CCNNNNNNNGG 2 cut(s) 331, 711
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 7 cut(s) 14, 17, 83, 86, 86, 121, 333
BsgI GTGCAG 1 cut(s) 16
Bsh1236I CGCG 5 cut(s) 114, 240, 360, 390, 721
BshFI GGCC 2 cut(s) 338, 645
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 331, 711
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 875
BsnI GGCC 2 cut(s) 338, 645
Bso31I GGTCTC 1 cut(s) 460
Bsp1407I TGTACA 1 cut(s) 925
Bsp143I GATC 4 cut(s) 9, 251, 636, 838
BspACI CCGC 5 cut(s) 109, 112, 358, 486, 787
BspANI GGCC 2 cut(s) 338, 645
BspFNI CGCG 5 cut(s) 114, 240, 360, 390, 721
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 400, 429
BspPI GGATC 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 460
BsrGI TGTACA 1 cut(s) 925
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 327, 394
BssMI GATC 4 cut(s) 9, 251, 636, 838
BssT1I CCWWGG 2 cut(s) 327, 394
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 657
BstAUI TGTACA 1 cut(s) 925
BstC8I GCNNGC 1 cut(s) 572
BstDEI CTNAG 3 cut(s) 248, 545, 846
BstF5I GGATG 2 cut(s) 280, 363
BstFNI CGCG 5 cut(s) 114, 240, 360, 390, 721
BstHHI GCGC 3 cut(s) 67, 240, 392
BstKTI GATC 4 cut(s) 12, 254, 639, 841
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 4 cut(s) 9, 251, 636, 838
BstMWI GCNNNNNNNGC 5 cut(s) 71, 105, 108, 117, 321
BstNI CCWGG 1 cut(s) 905
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 903
BstUI CGCG 5 cut(s) 114, 240, 360, 390, 721
BstV1I GCAGC 7 cut(s) 14, 17, 83, 86, 86, 121, 333
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 338, 645
BtsCI GGATG 2 cut(s) 280, 363
BtsI GCAGTG 2 cut(s) 60, 339
BtsIMutI CAGTG 3 cut(s) 60, 339, 646
Cac8I GCNNGC 1 cut(s) 572
CaiI CAGNNNCTG 2 cut(s) 99, 260
CciI TCATGA 1 cut(s) 12
CfoI GCGC 3 cut(s) 67, 240, 392
Cfr13I GGNCC 2 cut(s) 427, 714
CseI GACGC 2 cut(s) 180, 710
Csp6I GTAC 5 cut(s) 42, 169, 186, 460, 926
CviAII CATG 5 cut(s) 13, 215, 526, 659, 811
CviQI GTAC 5 cut(s) 42, 169, 186, 460, 926
DdeI CTNAG 3 cut(s) 248, 545, 846
DpnI GATC 4 cut(s) 11, 253, 638, 840
DpnII GATC 4 cut(s) 9, 251, 636, 838
DriI GACNNNNNGTC 2 cut(s) 353, 720
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 1 cut(s) 657
Eam1105I GACNNNNNGTC 2 cut(s) 353, 720
EarI CTCTTC 1 cut(s) 657
Eco130I CCWWGG 2 cut(s) 327, 394
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 427, 714
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 903
EcoT14I CCWWGG 2 cut(s) 327, 394
ErhI CCWWGG 2 cut(s) 327, 394
FaeI CATG 5 cut(s) 16, 218, 529, 662, 814
FaiI YATR 9 cut(s) 14, 152, 216, 475, 527, 551, 660, 812, 834
FaqI GGGAC 1 cut(s) 875
FatI CATG 5 cut(s) 12, 214, 525, 658, 810
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 9 cut(s) 28, 31, 75, 97, 100, 109, 112, 135, 322
FokI GGATG 2 cut(s) 287, 350
Fsp4HI GCNGC 9 cut(s) 28, 31, 75, 97, 100, 109, 112, 135, 322
FspBI CTAG 4 cut(s) 45, 138, 491, 587
GlaI GCGC 3 cut(s) 66, 239, 391
GluI GCNGC 9 cut(s) 28, 31, 75, 97, 100, 109, 112, 135, 322
HaeIII GGCC 2 cut(s) 338, 645
HgaI GACGC 2 cut(s) 180, 710
HhaI GCGC 3 cut(s) 67, 240, 392
Hin1II CATG 5 cut(s) 16, 218, 529, 662, 814
Hin6I GCGC 3 cut(s) 65, 238, 390
HinP1I GCGC 3 cut(s) 65, 238, 390
HinfI GANTC 4 cut(s) 206, 601, 631, 652
HphI GGTGA 1 cut(s) 848
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 256, 437, 630, 636
Hpy188III TCNNGA 6 cut(s) 13, 377, 452, 515, 712, 824
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 3 cut(s) 305, 726, 869
HpyAV CCTTC 3 cut(s) 113, 374, 510
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4V TGCA 5 cut(s) 33, 74, 315, 734, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 105, 108, 117, 321
HpyF3I CTNAG 3 cut(s) 248, 545, 846
Hsp92II CATG 5 cut(s) 16, 218, 529, 662, 814
HspAI GCGC 3 cut(s) 65, 238, 390
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 4 cut(s) 9, 251, 636, 838
LmnI GCTCC 2 cut(s) 72, 292
LpnPI CCDG 7 cut(s) 24, 106, 550, 697, 837, 890, 917
Lsp1109I GCAGC 7 cut(s) 14, 17, 83, 86, 86, 121, 333
LweI GCATC 1 cut(s) 754
MaeI CTAG 4 cut(s) 45, 138, 491, 587
MaeIII GTNAC 2 cut(s) 452, 649
MalI GATC 4 cut(s) 11, 253, 638, 840
MboI GATC 4 cut(s) 9, 251, 636, 838
MboII GAAGA 3 cut(s) 186, 674, 678
MfeI CAATTG 1 cut(s) 738
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 4 cut(s) 267, 620, 738, 891
MluNI TGGCCA 1 cut(s) 645
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 2 cut(s) 807, 866
MnlI CCTC 6 cut(s) 208, 250, 328, 584, 727, 736
Mox20I TGGCCA 1 cut(s) 645
MscI TGGCCA 1 cut(s) 645
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 905
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 905
MvnI CGCG 5 cut(s) 114, 240, 360, 390, 721
MwoI GCNNNNNNNGC 5 cut(s) 71, 105, 108, 117, 321
NdeII GATC 4 cut(s) 9, 251, 636, 838
NlaIII CATG 5 cut(s) 16, 218, 529, 662, 814
NlaIV GGNNCC 2 cut(s) 400, 429
NmuCI GTSAC 2 cut(s) 452, 649
NspI RCATGY 1 cut(s) 529
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 3 cut(s) 206, 601, 631
PflFI GACNNNGTC 1 cut(s) 431
PkrI GCNGC 9 cut(s) 29, 32, 76, 98, 101, 110, 113, 136, 323
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 903
PspGI CCWGG 1 cut(s) 903
PspN4I GGNNCC 2 cut(s) 400, 429
PspPI GGNCC 2 cut(s) 427, 714
PspPPI RGGWCCY 1 cut(s) 427
PstNI CAGNNNCTG 2 cut(s) 99, 260
PsyI GACNNNGTC 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 5 cut(s) 43, 170, 187, 461, 927
RsaNI GTAC 5 cut(s) 42, 169, 186, 460, 926
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 771
SatI GCNGC 9 cut(s) 28, 31, 75, 97, 100, 109, 112, 135, 322
Sau3AI GATC 4 cut(s) 9, 251, 636, 838
Sau96I GGNCC 2 cut(s) 427, 714
ScaI AGTACT 2 cut(s) 170, 187
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 905
SetI ASST 9 cut(s) 29, 98, 297, 354, 375, 404, 685, 719, 947
SfaNI GCATC 1 cut(s) 754
SinI GGWCC 2 cut(s) 427, 714
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 4 cut(s) 267, 620, 738, 891
SsiI CCGC 5 cut(s) 109, 112, 358, 486, 787
SspMI CTAG 4 cut(s) 45, 138, 491, 587
StyD4I CCNGG 1 cut(s) 903
StyI CCWWGG 2 cut(s) 327, 394
TaaI ACNGT 1 cut(s) 869
TaqI TCGA 3 cut(s) 346, 533, 655
TasI AATT 4 cut(s) 267, 620, 738, 891
TatI WGTACW 4 cut(s) 168, 185, 459, 925
TauI GCSGC 2 cut(s) 111, 114
TfiI GAWTC 3 cut(s) 206, 601, 631
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 3 cut(s) 67, 346, 646
TseFI GTSAC 2 cut(s) 452, 649
TseI GCWGC 7 cut(s) 27, 30, 74, 96, 99, 134, 321
Tsp45I GTSAC 2 cut(s) 452, 649
TspDTI ATGAA 5 cut(s) 35, 148, 675, 678, 682
TspRI CASTG 3 cut(s) 67, 346, 646
Tth111I GACNNNGTC 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 427, 714
XceI RCATGY 1 cut(s) 529
XspI CTAG 4 cut(s) 45, 138, 491, 587
ZrmI AGTACT 2 cut(s) 170, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.