Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610 |
| fragaria_vesca | FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 |
| malus_domestica | MD04G1203700.v1.1 MD12G1217500.v1.1 |
| prunus_persica | Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 |
| pyrus_communis | pycom04g18020 pycom12g20300 |
| rosa_chinensis | RchiOBHm_Chr3g0455181 |
| rosa_laevigata | RLG00000025380 |
| rosa_multiflora | Rmu_sc0002169.1_g000028 |
| rosa_roxburghii | Rroxscaffold_6G00424500 |
| rosa_rugosa | Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500 |
| rosa_samantha | Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200 |
| rosa_wichuraiana | Rw3G005110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 200 |
| Acc36I | ACCTGC | 1 cut(s) | 3142 |
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 1 cut(s) | 1747 |
| AccII | CGCG | 2 cut(s) | 2016, 2667 |
| AciI | CCGC | 5 cut(s) | 113, 408, 1447, 2143, 2916 |
| AclWI | GGATC | 5 cut(s) | 1179, 1192, 2955, 2968, 3232 |
| AcoI | YGGCCR | 1 cut(s) | 2812 |
| AcsI | RAATTY | 8 cut(s) | 43, 1358, 1534, 2312, 2399, 2431, 2437, 3429 |
| AcuI | CTGAAG | 3 cut(s) | 119, 429, 1008 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 33, 743, 1640, 2303 |
| AflII | CTTAAG | 1 cut(s) | 2372 |
| AflIII | ACRYGT | 2 cut(s) | 2203, 3323 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1001, 2204, 3124 |
| AjnI | CCWGG | 8 cut(s) | 61, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| Alw21I | GWGCWC | 5 cut(s) | 722, 2256, 2584, 2650, 3312 |
| Alw26I | GTCTC | 7 cut(s) | 370, 435, 837, 1402, 1553, 2371, 3242 |
| Alw44I | GTGCAC | 2 cut(s) | 2580, 3308 |
| AlwI | GGATC | 5 cut(s) | 1179, 1192, 2955, 2968, 3232 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 278, 2564 |
| AoxI | GGCC | 6 cut(s) | 54, 225, 286, 2812, 2917, 3169 |
| ApaLI | GTGCAC | 2 cut(s) | 2580, 3308 |
| ApeKI | GCWGC | 5 cut(s) | 188, 638, 1772, 2558, 3020 |
| ApoI | RAATTY | 8 cut(s) | 43, 1358, 1534, 2312, 2399, 2431, 2437, 3429 |
| AseI | ATTAAT | 2 cut(s) | 891, 2712 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 706, 1216 |
| AspLEI | GCGC | 3 cut(s) | 201, 1115, 2669 |
| AspS9I | GGNCC | 5 cut(s) | 110, 226, 1703, 3169, 3230 |
| AsuC2I | CCSGG | 1 cut(s) | 373 |
| AsuHPI | GGTGA | 2 cut(s) | 980, 2248 |
| AsuII | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| AvaII | GGWCC | 3 cut(s) | 110, 1703, 3230 |
| BaeGI | GKGCMC | 4 cut(s) | 272, 1782, 2584, 3312 |
| BalI | TGGCCA | 1 cut(s) | 2814 |
| BamHI | GGATCC | 2 cut(s) | 1184, 2960 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 4 cut(s) | 722, 2650, 3085, 3207 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2625, 2657 |
| BauI | CACGAG | 2 cut(s) | 501, 3473 |
| BbsI | GAAGAC | 1 cut(s) | 792 |
| Bbv12I | GWGCWC | 5 cut(s) | 722, 2256, 2584, 2650, 3312 |
| BbvI | GCAGC | 5 cut(s) | 175, 650, 1784, 2570, 3007 |
| BceAI | ACGGC | 2 cut(s) | 1657, 1710 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1353, 1387 |
| BciT130I | CCWGG | 8 cut(s) | 63, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| BciVI | GTATCC | 1 cut(s) | 2521 |
| BclI | TGATCA | 2 cut(s) | 100, 2263 |
| BcnI | CCSGG | 1 cut(s) | 373 |
| BcoDI | GTCTC | 7 cut(s) | 370, 435, 837, 1402, 1553, 2371, 3242 |
| BfaI | CTAG | 2 cut(s) | 3086, 3123 |
| BfmI | CTRYAG | 2 cut(s) | 192, 882 |
| BfrI | CTTAAG | 1 cut(s) | 2372 |
| BfuAI | ACCTGC | 1 cut(s) | 3142 |
| BfuI | GTATCC | 1 cut(s) | 2521 |
| BglII | AGATCT | 1 cut(s) | 704 |
| BisI | GCNGC | 7 cut(s) | 189, 409, 639, 1773, 2559, 2917, 3021 |
| BlpI | GCTNAGC | 1 cut(s) | 2702 |
| BlsI | GCNGC | 7 cut(s) | 190, 410, 640, 1774, 2560, 2918, 3022 |
| BmcAI | AGTACT | 2 cut(s) | 1973, 2787 |
| Bme1390I | CCNGG | 9 cut(s) | 63, 373, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| Bme18I | GGWCC | 3 cut(s) | 110, 1703, 3230 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1001, 2204, 3124 |
| BmgT120I | GGNCC | 5 cut(s) | 110, 226, 1703, 3169, 3230 |
| BmiI | GGNNCC | 6 cut(s) | 6, 1186, 1704, 1705, 2962, 3232 |
| BmrFI | CCNGG | 9 cut(s) | 63, 373, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| BmrI | ACTGGG | 1 cut(s) | 527 |
| BmuI | ACTGGG | 1 cut(s) | 527 |
| BpiI | GAAGAC | 1 cut(s) | 792 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 508, 540, 1996, 2028, 3127, 3159 |
| BpmI | CTGGAG | 2 cut(s) | 849, 1400 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2702 |
| Bpu14I | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| BpuEI | CTTGAG | 4 cut(s) | 738, 2934, 3129, 3345 |
| BpuMI | CCSGG | 1 cut(s) | 373 |
| Bsa29I | ATCGAT | 1 cut(s) | 3096 |
| BsaAI | YACGTR | 1 cut(s) | 1898 |
| BsaBI | GATNNNNATC | 1 cut(s) | 492 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaWI | WCCGGW | 1 cut(s) | 156 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1853, 1883 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 33, 743, 1640, 2303 |
| Bse1I | ACTGG | 8 cut(s) | 427, 533, 832, 1125, 1568, 1594, 1634, 2808 |
| Bse3DI | GCAATG | 6 cut(s) | 122, 257, 303, 358, 2411, 3039 |
| Bse8I | GATNNNNATC | 1 cut(s) | 492 |
| BseBI | CCWGG | 8 cut(s) | 63, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| BseCI | ATCGAT | 1 cut(s) | 3096 |
| BseGI | GGATG | 8 cut(s) | 733, 1129, 1166, 1210, 2218, 2329, 2718, 3391 |
| BseJI | GATNNNNATC | 1 cut(s) | 492 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 33, 743, 1640, 2303 |
| BseMI | GCAATG | 6 cut(s) | 122, 257, 303, 358, 2411, 3039 |
| BseMII | CTCAG | 5 cut(s) | 642, 1470, 1782, 1845, 2058 |
| BseNI | ACTGG | 8 cut(s) | 427, 533, 832, 1125, 1568, 1594, 1634, 2808 |
| BseRI | GAGGAG | 2 cut(s) | 681, 1982 |
| BseSI | GKGCMC | 4 cut(s) | 272, 1782, 2584, 3312 |
| BseXI | GCAGC | 5 cut(s) | 175, 650, 1784, 2570, 3007 |
| BseYI | CCCAGC | 1 cut(s) | 2489 |
| BsgI | GTGCAG | 3 cut(s) | 525, 1856, 2296 |
| Bsh1236I | CGCG | 2 cut(s) | 2016, 2667 |
| BshFI | GGCC | 6 cut(s) | 56, 227, 288, 2814, 2919, 3171 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshVI | ATCGAT | 1 cut(s) | 3096 |
| BsiHKAI | GWGCWC | 5 cut(s) | 722, 2256, 2584, 2650, 3312 |
| BsiSI | CCGG | 3 cut(s) | 157, 373, 3347 |
| BslFI | GGGAC | 5 cut(s) | 1382, 1689, 2175, 3216, 3387 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 33, 743, 1640, 2303 |
| BsmAI | GTCTC | 7 cut(s) | 370, 435, 837, 1402, 1553, 2371, 3242 |
| BsmBI | CGTCTC | 1 cut(s) | 3242 |
| BsmFI | GGGAC | 5 cut(s) | 1382, 1689, 2175, 3216, 3387 |
| BsmI | GAATGC | 3 cut(s) | 735, 2464, 2750 |
| BsnI | GGCC | 6 cut(s) | 56, 227, 288, 2814, 2919, 3171 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| Bsp119I | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| Bsp1286I | GDGCHC | 9 cut(s) | 272, 722, 1782, 2256, 2584, 2650, 3085, 3207, 3312 |
| Bsp1407I | TGTACA | 2 cut(s) | 2791, 3420 |
| Bsp143I | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2702 |
| BspACI | CCGC | 5 cut(s) | 113, 408, 1447, 2143, 2916 |
| BspANI | GGCC | 6 cut(s) | 56, 227, 288, 2814, 2919, 3171 |
| BspCNI | CTCAG | 5 cut(s) | 643, 1469, 1783, 1844, 2059 |
| BspDI | ATCGAT | 1 cut(s) | 3096 |
| BspFNI | CGCG | 2 cut(s) | 2016, 2667 |
| BspHI | TCATGA | 1 cut(s) | 2266 |
| BspLI | GGNNCC | 6 cut(s) | 6, 1186, 1704, 1705, 2962, 3232 |
| BspMI | ACCTGC | 1 cut(s) | 3142 |
| BspPI | GGATC | 5 cut(s) | 1179, 1192, 2955, 2968, 3232 |
| BspQI | GCTCTTC | 1 cut(s) | 2220 |
| BspT104I | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTI | CTTAAG | 1 cut(s) | 2372 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 6 cut(s) | 122, 257, 303, 358, 2411, 3039 |
| BsrGI | TGTACA | 2 cut(s) | 2791, 3420 |
| BsrI | ACTGG | 8 cut(s) | 427, 533, 832, 1125, 1568, 1594, 1634, 2808 |
| BssMI | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| BssSI | CACGAG | 2 cut(s) | 501, 3473 |
| BssT1I | CCWWGG | 2 cut(s) | 1011, 1943 |
| Bst2BI | CACGAG | 2 cut(s) | 501, 3473 |
| Bst2UI | CCWGG | 8 cut(s) | 63, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| Bst6I | CTCTTC | 4 cut(s) | 80, 509, 1551, 2220 |
| BstAFI | CTTAAG | 1 cut(s) | 2372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 730 |
| BstAUI | TGTACA | 2 cut(s) | 2791, 3420 |
| BstBAI | YACGTR | 1 cut(s) | 1898 |
| BstBI | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| BstC8I | GCNNGC | 4 cut(s) | 722, 1164, 1714, 3389 |
| BstDEI | CTNAG | 9 cut(s) | 549, 651, 1456, 1791, 1831, 2067, 2702, 2834, 3212 |
| BstF5I | GGATG | 8 cut(s) | 733, 1129, 1166, 1210, 2218, 2329, 2718, 3391 |
| BstFNI | CGCG | 2 cut(s) | 2016, 2667 |
| BstHHI | GCGC | 3 cut(s) | 201, 1115, 2669 |
| BstKTI | GATC | 7 cut(s) | 103, 707, 1187, 2266, 2293, 2963, 3227 |
| BstMAI | GTCTC | 7 cut(s) | 370, 435, 837, 1402, 1553, 2371, 3242 |
| BstMBI | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 635, 730, 1694, 2588, 2633, 2881, 3029, 3168, 3356 |
| BstNI | CCWGG | 8 cut(s) | 63, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| BstNSI | RCATGY | 3 cut(s) | 978, 2362, 3327 |
| BstSCI | CCNGG | 9 cut(s) | 61, 371, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| BstSFI | CTRYAG | 2 cut(s) | 192, 882 |
| BstSLI | GKGCMC | 4 cut(s) | 272, 1782, 2584, 3312 |
| BstSNI | TACGTA | 1 cut(s) | 1898 |
| BstUI | CGCG | 2 cut(s) | 2016, 2667 |
| BstV1I | GCAGC | 5 cut(s) | 175, 650, 1784, 2570, 3007 |
| BstV2I | GAAGAC | 1 cut(s) | 792 |
| BstX2I | RGATCY | 4 cut(s) | 704, 1184, 2960, 3224 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2426, 2738, 3413 |
| BstYI | RGATCY | 4 cut(s) | 704, 1184, 2960, 3224 |
| Bsu15I | ATCGAT | 1 cut(s) | 3096 |
| BsuI | GTATCC | 1 cut(s) | 2521 |
| BsuRI | GGCC | 6 cut(s) | 56, 227, 288, 2814, 2919, 3171 |
| BsuTUI | ATCGAT | 1 cut(s) | 3096 |
| BtgZI | GCGATG | 2 cut(s) | 2194, 3158 |
| BtsCI | GGATG | 8 cut(s) | 733, 1129, 1166, 1210, 2218, 2329, 2718, 3391 |
| BtsI | GCAGTG | 6 cut(s) | 337, 1707, 1782, 2152, 3138, 3288 |
| BveI | ACCTGC | 1 cut(s) | 3142 |
| Cac8I | GCNNGC | 4 cut(s) | 722, 1164, 1714, 3389 |
| CaiI | CAGNNNCTG | 2 cut(s) | 278, 2564 |
| CciI | TCATGA | 1 cut(s) | 2266 |
| CfoI | GCGC | 3 cut(s) | 201, 1115, 2669 |
| Cfr13I | GGNCC | 5 cut(s) | 110, 226, 1703, 3169, 3230 |
| ClaI | ATCGAT | 1 cut(s) | 3096 |
| CseI | GACGC | 1 cut(s) | 365 |
| CsiI | ACCWGGT | 1 cut(s) | 2602 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2770, 2805 |
| DdeI | CTNAG | 9 cut(s) | 549, 651, 1456, 1791, 1831, 2067, 2702, 2834, 3212 |
| DpnI | GATC | 7 cut(s) | 102, 706, 1186, 2265, 2292, 2962, 3226 |
| DpnII | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| DraI | TTTAAA | 2 cut(s) | 2436, 2754 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1001, 2204, 3124 |
| EaeI | YGGCCR | 1 cut(s) | 2812 |
| Eam1104I | CTCTTC | 4 cut(s) | 80, 509, 1551, 2220 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1001, 2204, 3124 |
| EarI | CTCTTC | 4 cut(s) | 80, 509, 1551, 2220 |
| Ecl136II | GAGCTC | 2 cut(s) | 720, 2648 |
| Eco105I | TACGTA | 1 cut(s) | 1898 |
| Eco130I | CCWWGG | 2 cut(s) | 1011, 1943 |
| Eco147I | AGGCCT | 1 cut(s) | 56 |
| Eco24I | GRGCYC | 4 cut(s) | 722, 2650, 3085, 3207 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 1 cut(s) | 1387 |
| Eco47I | GGWCC | 3 cut(s) | 110, 1703, 3230 |
| Eco53kI | GAGCTC | 2 cut(s) | 720, 2648 |
| Eco57I | CTGAAG | 3 cut(s) | 119, 429, 1008 |
| EcoICRI | GAGCTC | 2 cut(s) | 720, 2648 |
| EcoO109I | RGGNCCY | 2 cut(s) | 226, 1703 |
| EcoRI | GAATTC | 1 cut(s) | 2312 |
| EcoRII | CCWGG | 8 cut(s) | 61, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| EcoRV | GATATC | 1 cut(s) | 1387 |
| EcoT14I | CCWWGG | 2 cut(s) | 1011, 1943 |
| EcoT22I | ATGCAT | 1 cut(s) | 735 |
| EcoT38I | GRGCYC | 4 cut(s) | 722, 2650, 3085, 3207 |
| ErhI | CCWWGG | 2 cut(s) | 1011, 1943 |
| Esp3I | CGTCTC | 1 cut(s) | 3242 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 747, 779, 981, 1013, 1201, 1233 |
| FaqI | GGGAC | 5 cut(s) | 1382, 1689, 2175, 3216, 3387 |
| FbaI | TGATCA | 2 cut(s) | 100, 2263 |
| FblI | GTMKAC | 1 cut(s) | 1747 |
| Fnu4HI | GCNGC | 7 cut(s) | 189, 409, 639, 1773, 2559, 2917, 3021 |
| FokI | GGATG | 8 cut(s) | 720, 1136, 1153, 1217, 2205, 2336, 2705, 3378 |
| FriOI | GRGCYC | 4 cut(s) | 722, 2650, 3085, 3207 |
| Fsp4HI | GCNGC | 7 cut(s) | 189, 409, 639, 1773, 2559, 2917, 3021 |
| FspBI | CTAG | 2 cut(s) | 3086, 3123 |
| FspI | TGCGCA | 1 cut(s) | 200 |
| GlaI | GCGC | 3 cut(s) | 200, 1114, 2668 |
| GluI | GCNGC | 7 cut(s) | 189, 409, 639, 1773, 2559, 2917, 3021 |
| GsaI | CCCAGC | 1 cut(s) | 2493 |
| GsuI | CTGGAG | 2 cut(s) | 849, 1400 |
| HaeIII | GGCC | 6 cut(s) | 56, 227, 288, 2814, 2919, 3171 |
| HapII | CCGG | 3 cut(s) | 157, 373, 3347 |
| HgaI | GACGC | 1 cut(s) | 365 |
| HhaI | GCGC | 3 cut(s) | 201, 1115, 2669 |
| Hin6I | GCGC | 3 cut(s) | 199, 1113, 2667 |
| HinP1I | GCGC | 3 cut(s) | 199, 1113, 2667 |
| HincII | GTYRAC | 1 cut(s) | 2600 |
| HindII | GTYRAC | 1 cut(s) | 2600 |
| HindIII | AAGCTT | 3 cut(s) | 392, 3060, 3385 |
| HpaII | CCGG | 3 cut(s) | 157, 373, 3347 |
| HphI | GGTGA | 2 cut(s) | 980, 2248 |
| HpyCH4IV | ACGT | 8 cut(s) | 388, 1585, 1750, 1897, 1910, 2203, 2848, 3397 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 635, 730, 1694, 2588, 2633, 2881, 3029, 3168, 3356 |
| HpyF3I | CTNAG | 9 cut(s) | 549, 651, 1456, 1791, 1831, 2067, 2702, 2834, 3212 |
| HpySE526I | ACGT | 8 cut(s) | 388, 1585, 1750, 1897, 1910, 2203, 2848, 3397 |
| HspAI | GCGC | 3 cut(s) | 199, 1113, 2667 |
| KflI | GGGWCCC | 1 cut(s) | 1703 |
| Ksp22I | TGATCA | 2 cut(s) | 100, 2263 |
| Kzo9I | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| LguI | GCTCTTC | 1 cut(s) | 2220 |
| LmnI | GCTCC | 3 cut(s) | 120, 1419, 2698 |
| Lsp1109I | GCAGC | 5 cut(s) | 175, 650, 1784, 2570, 3007 |
| MabI | ACCWGGT | 1 cut(s) | 2602 |
| MaeI | CTAG | 2 cut(s) | 3086, 3123 |
| MaeII | ACGT | 8 cut(s) | 388, 1585, 1750, 1897, 1910, 2203, 2848, 3397 |
| MaeIII | GTNAC | 4 cut(s) | 1149, 1690, 3237, 3379 |
| MalI | GATC | 7 cut(s) | 102, 706, 1186, 2265, 2292, 2962, 3226 |
| MboI | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| MflI | RGATCY | 4 cut(s) | 704, 1184, 2960, 3224 |
| MhlI | GDGCHC | 9 cut(s) | 272, 722, 1782, 2256, 2584, 2650, 3085, 3207, 3312 |
| MlsI | TGGCCA | 1 cut(s) | 2814 |
| MluNI | TGGCCA | 1 cut(s) | 2814 |
| MlyI | GAGTC | 5 cut(s) | 1364, 2157, 2963, 3113, 3136 |
| MmeI | TCCRAC | 5 cut(s) | 575, 1851, 1966, 2176, 3394 |
| Mox20I | TGGCCA | 1 cut(s) | 2814 |
| Mph1103I | ATGCAT | 1 cut(s) | 735 |
| MroXI | GAANNNNTTC | 2 cut(s) | 706, 1216 |
| MscI | TGGCCA | 1 cut(s) | 2814 |
| MslI | CAYNNNNRTG | 5 cut(s) | 315, 1478, 2324, 2424, 3305 |
| Msp20I | TGGCCA | 1 cut(s) | 2814 |
| MspCI | CTTAAG | 1 cut(s) | 2372 |
| MspI | CCGG | 3 cut(s) | 157, 373, 3347 |
| MspR9I | CCNGG | 9 cut(s) | 63, 373, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| Mva1269I | GAATGC | 3 cut(s) | 735, 2464, 2750 |
| MvaI | CCWGG | 8 cut(s) | 63, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| MvnI | CGCG | 2 cut(s) | 2016, 2667 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 635, 730, 1694, 2588, 2633, 2881, 3029, 3168, 3356 |
| NciI | CCSGG | 1 cut(s) | 373 |
| NdeII | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 1186, 1704, 1705, 2962, 3232 |
| NmuCI | GTSAC | 2 cut(s) | 1149, 3379 |
| NsbI | TGCGCA | 1 cut(s) | 200 |
| NsiI | ATGCAT | 1 cut(s) | 735 |
| NspI | RCATGY | 3 cut(s) | 978, 2362, 3327 |
| NspV | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| PagI | TCATGA | 1 cut(s) | 2266 |
| PasI | CCCWGGG | 2 cut(s) | 1292, 2044 |
| PceI | AGGCCT | 1 cut(s) | 56 |
| PciI | ACATGT | 1 cut(s) | 3323 |
| PciSI | GCTCTTC | 1 cut(s) | 2220 |
| PctI | GAATGC | 3 cut(s) | 735, 2464, 2750 |
| PdmI | GAANNNNTTC | 2 cut(s) | 706, 1216 |
| PflFI | GACNNNGTC | 1 cut(s) | 2978 |
| PfoI | TCCNGGA | 2 cut(s) | 371, 2721 |
| PkrI | GCNGC | 7 cut(s) | 190, 410, 640, 1774, 2560, 2918, 3022 |
| PleI | GAGTC | 5 cut(s) | 1364, 2157, 2962, 3113, 3136 |
| PpsI | GAGTC | 5 cut(s) | 1364, 2157, 2962, 3113, 3136 |
| Ppu21I | YACGTR | 1 cut(s) | 1898 |
| PpuMI | RGGWCCY | 1 cut(s) | 1703 |
| PscI | ACATGT | 1 cut(s) | 3323 |
| PshBI | ATTAAT | 2 cut(s) | 891, 2712 |
| Psp124BI | GAGCTC | 2 cut(s) | 722, 2650 |
| Psp5II | RGGWCCY | 1 cut(s) | 1703 |
| Psp6I | CCWGG | 8 cut(s) | 61, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| PspFI | CCCAGC | 1 cut(s) | 2489 |
| PspGI | CCWGG | 8 cut(s) | 61, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 1186, 1704, 1705, 2962, 3232 |
| PspPI | GGNCC | 5 cut(s) | 110, 226, 1703, 3169, 3230 |
| PspPPI | RGGWCCY | 1 cut(s) | 1703 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 233, 265, 1321, 1353 |
| PstNI | CAGNNNCTG | 2 cut(s) | 278, 2564 |
| PsuI | RGATCY | 4 cut(s) | 704, 1184, 2960, 3224 |
| PsyI | GACNNNGTC | 1 cut(s) | 2978 |
| RseI | CAYNNNNRTG | 5 cut(s) | 315, 1478, 2324, 2424, 3305 |
| SacI | GAGCTC | 2 cut(s) | 722, 2650 |
| SapI | GCTCTTC | 1 cut(s) | 2220 |
| SatI | GCNGC | 7 cut(s) | 189, 409, 639, 1773, 2559, 2917, 3021 |
| Sau3AI | GATC | 7 cut(s) | 100, 704, 1184, 2263, 2290, 2960, 3224 |
| Sau96I | GGNCC | 5 cut(s) | 110, 226, 1703, 3169, 3230 |
| ScaI | AGTACT | 2 cut(s) | 1973, 2787 |
| SchI | GAGTC | 5 cut(s) | 1364, 2157, 2963, 3113, 3136 |
| ScrFI | CCNGG | 9 cut(s) | 63, 373, 632, 1293, 2045, 2604, 2723, 2816, 2862 |
| SduI | GDGCHC | 9 cut(s) | 272, 722, 1782, 2256, 2584, 2650, 3085, 3207, 3312 |
| SexAI | ACCWGGT | 1 cut(s) | 2602 |
| SfcI | CTRYAG | 2 cut(s) | 192, 882 |
| SfuI | TTCGAA | 3 cut(s) | 943, 1072, 1273 |
| SinI | GGWCC | 3 cut(s) | 110, 1703, 3230 |
| SmiI | ATTTAAAT | 1 cut(s) | 2436 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 315, 1478, 2324, 2424, 3305 |
| SmlI | CTYRAG | 5 cut(s) | 753, 2372, 2949, 3144, 3360 |
| SmoI | CTYRAG | 5 cut(s) | 753, 2372, 2949, 3144, 3360 |
| SnaBI | TACGTA | 1 cut(s) | 1898 |
| SseBI | AGGCCT | 1 cut(s) | 56 |
| SsiI | CCGC | 5 cut(s) | 113, 408, 1447, 2143, 2916 |
| SspI | AATATT | 3 cut(s) | 211, 542, 2386 |
| SspMI | CTAG | 2 cut(s) | 3086, 3123 |
| SstI | GAGCTC | 2 cut(s) | 722, 2650 |
| StuI | AGGCCT | 1 cut(s) | 56 |
| StyD4I | CCNGG | 9 cut(s) | 61, 371, 630, 1291, 2043, 2602, 2721, 2814, 2860 |
| StyI | CCWWGG | 2 cut(s) | 1011, 1943 |
| SwaI | ATTTAAAT | 1 cut(s) | 2436 |
| TaiI | ACGT | 8 cut(s) | 391, 1588, 1753, 1900, 1913, 2206, 2851, 3400 |
| TaqI | TCGA | 7 cut(s) | 943, 1072, 1273, 1327, 1373, 2982, 3096 |
| TaqII | GACCGA | 1 cut(s) | 1615 |
| TatI | WGTACW | 5 cut(s) | 1971, 2785, 2791, 3326, 3420 |
| TauI | GCSGC | 2 cut(s) | 411, 2919 |
| TseFI | GTSAC | 2 cut(s) | 1149, 3379 |
| TseI | GCWGC | 5 cut(s) | 188, 638, 1772, 2558, 3020 |
| Tsp45I | GTSAC | 2 cut(s) | 1149, 3379 |
| TspGWI | ACGGA | 2 cut(s) | 490, 3266 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2978 |
| Vha464I | CTTAAG | 1 cut(s) | 2372 |
| VneI | GTGCAC | 2 cut(s) | 2580, 3308 |
| VpaK11BI | GGWCC | 3 cut(s) | 110, 1703, 3230 |
| VspI | ATTAAT | 2 cut(s) | 891, 2712 |
| XapI | RAATTY | 8 cut(s) | 43, 1358, 1534, 2312, 2399, 2431, 2437, 3429 |
| XbaI | TCTAGA | 1 cut(s) | 3085 |
| XceI | RCATGY | 3 cut(s) | 978, 2362, 3327 |
| XmiI | GTMKAC | 1 cut(s) | 1747 |
| XmnI | GAANNNNTTC | 2 cut(s) | 706, 1216 |
| XspI | CTAG | 2 cut(s) | 3086, 3123 |
| ZrmI | AGTACT | 2 cut(s) | 1973, 2787 |
| Zsp2I | ATGCAT | 1 cut(s) | 735 |