Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610 |
| fragaria_vesca | FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 |
| malus_domestica | MD04G1203700.v1.1 MD12G1217500.v1.1 |
| prunus_persica | Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 |
| pyrus_communis | pycom04g18020 pycom12g20300 |
| rosa_chinensis | RchiOBHm_Chr3g0455181 |
| rosa_laevigata | RLG00000025380 |
| rosa_multiflora | Rmu_sc0002169.1_g000028 |
| rosa_roxburghii | Rroxscaffold_6G00424500 |
| rosa_rugosa | Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500 |
| rosa_samantha | Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200 |
| rosa_wichuraiana | Rw3G005110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 218, 654 |
| Acc65I | GGTACC | 1 cut(s) | 3490 |
| AccB1I | GGYRCC | 1 cut(s) | 3490 |
| AccI | GTMKAC | 1 cut(s) | 1448 |
| AciI | CCGC | 5 cut(s) | 34, 75, 398, 2308, 2471 |
| AclWI | GGATC | 6 cut(s) | 806, 1219, 1635, 1660, 2983, 3212 |
| AcoI | YGGCCR | 2 cut(s) | 517, 2827 |
| AcsI | RAATTY | 9 cut(s) | 705, 1262, 2327, 2398, 2414, 2458, 2881, 3432, 3444 |
| AcuI | CTGAAG | 4 cut(s) | 363, 1035, 1296, 2823 |
| AfaI | GTAC | 9 cut(s) | 289, 907, 1366, 1911, 1988, 2802, 2808, 3211, 3492 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 526, 785, 1252, 1389, 2318, 2476 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1028 |
| AjnI | CCWGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2545, 2577 |
| Alw26I | GTCTC | 8 cut(s) | 604, 1182, 1426, 2014, 2386, 2631, 3007, 3162 |
| Alw44I | GTGCAC | 3 cut(s) | 1921, 1944, 3323 |
| AlwI | GGATC | 6 cut(s) | 806, 1219, 1635, 1660, 2983, 3212 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 296, 1685, 2564, 3124 |
| Ama87I | CYCGRG | 2 cut(s) | 525, 795 |
| ApaLI | GTGCAC | 3 cut(s) | 1921, 1944, 3323 |
| ApeKI | GCWGC | 6 cut(s) | 206, 209, 662, 1890, 2558, 3035 |
| ApoI | RAATTY | 9 cut(s) | 705, 1262, 2327, 2398, 2414, 2458, 2881, 3432, 3444 |
| AseI | ATTAAT | 1 cut(s) | 918 |
| Asp718I | GGTACC | 1 cut(s) | 3490 |
| AspLEI | GCGC | 4 cut(s) | 219, 655, 1325, 1852 |
| AspS9I | GGNCC | 5 cut(s) | 4, 128, 2468, 3184, 3245 |
| AsuHPI | GGTGA | 4 cut(s) | 1007, 1571, 2177, 3231 |
| AvaI | CYCGRG | 2 cut(s) | 525, 795 |
| AvaII | GGWCC | 2 cut(s) | 128, 3245 |
| BaeGI | GKGCMC | 3 cut(s) | 1925, 1948, 3327 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 582, 615 |
| BalI | TGGCCA | 2 cut(s) | 519, 2829 |
| BanI | GGYRCC | 1 cut(s) | 3490 |
| BanII | GRGCYC | 2 cut(s) | 764, 2656 |
| BauI | CACGAG | 3 cut(s) | 783, 2028, 2670 |
| BbsI | GAAGAC | 4 cut(s) | 733, 834, 1794, 1886 |
| BbvI | GCAGC | 6 cut(s) | 193, 196, 674, 1877, 2570, 3022 |
| BceAI | ACGGC | 1 cut(s) | 2338 |
| BciT130I | CCWGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| BciVI | GTATCC | 1 cut(s) | 583 |
| BclI | TGATCA | 1 cut(s) | 2278 |
| BcoDI | GTCTC | 8 cut(s) | 604, 1182, 1426, 2014, 2386, 2631, 3007, 3162 |
| BfaI | CTAG | 4 cut(s) | 1299, 2490, 2979, 3101 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BfuI | GTATCC | 1 cut(s) | 583 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2896 |
| BisI | GCNGC | 6 cut(s) | 207, 210, 663, 1891, 2559, 3036 |
| BlsI | GCNGC | 6 cut(s) | 208, 211, 664, 1892, 2560, 3037 |
| BmcAI | AGTACT | 1 cut(s) | 1988 |
| Bme1390I | CCNGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| Bme18I | GGWCC | 2 cut(s) | 128, 3245 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1028 |
| BmeT110I | CYCGRG | 2 cut(s) | 525, 795 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 128, 2468, 3184, 3245 |
| BmiI | GGNNCC | 4 cut(s) | 6, 129, 1398, 3492 |
| BmrFI | CCNGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| BmrI | ACTGGG | 2 cut(s) | 551, 2015 |
| BmuI | ACTGGG | 2 cut(s) | 551, 2015 |
| BpiI | GAAGAC | 4 cut(s) | 733, 834, 1794, 1886 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 532, 564, 2011, 2043 |
| BpmI | CTGGAG | 5 cut(s) | 891, 1374, 1427, 1825, 3121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2708 |
| BpuEI | CTTGAG | 4 cut(s) | 173, 2949, 2989, 3144 |
| BsaAI | YACGTR | 1 cut(s) | 1913 |
| BsaBI | GATNNNNATC | 1 cut(s) | 484 |
| BsaI | GGTCTC | 1 cut(s) | 3162 |
| BsaJI | CCNNGG | 8 cut(s) | 524, 1644, 1958, 2059, 2069, 2796, 2894, 3410 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1823, 1853, 2681, 2711 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 526, 785, 1252, 1389, 2318, 2476 |
| Bse118I | RCCGGY | 1 cut(s) | 1399 |
| Bse3DI | GCAATG | 3 cut(s) | 376, 1781, 3054 |
| Bse8I | GATNNNNATC | 1 cut(s) | 484 |
| BseBI | CCWGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| BseDI | CCNNGG | 8 cut(s) | 524, 1644, 1958, 2059, 2069, 2796, 2894, 3410 |
| BseGI | GGATG | 7 cut(s) | 485, 775, 1156, 2233, 2344, 2727, 3406 |
| BseJI | GATNNNNATC | 1 cut(s) | 484 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 526, 785, 1252, 1389, 2318, 2476 |
| BseMI | GCAATG | 3 cut(s) | 376, 1781, 3054 |
| BseMII | CTCAG | 9 cut(s) | 54, 442, 666, 777, 1497, 1797, 2073, 2652, 3267 |
| BseRI | GAGGAG | 2 cut(s) | 705, 1997 |
| BseSI | GKGCMC | 3 cut(s) | 1925, 1948, 3327 |
| BseXI | GCAGC | 6 cut(s) | 193, 196, 674, 1877, 2570, 3022 |
| BseYI | CCCAGC | 1 cut(s) | 1319 |
| BsgI | GTGCAG | 2 cut(s) | 1689, 2311 |
| BshNI | GGYRCC | 1 cut(s) | 3490 |
| BsiHKCI | CYCGRG | 2 cut(s) | 525, 795 |
| BsiSI | CCGG | 3 cut(s) | 1190, 1400, 3362 |
| BslFI | GGGAC | 4 cut(s) | 141, 647, 1696, 2022 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 526, 785, 1252, 1389, 2318, 2476 |
| BsmAI | GTCTC | 8 cut(s) | 604, 1182, 1426, 2014, 2386, 2631, 3007, 3162 |
| BsmBI | CGTCTC | 1 cut(s) | 2631 |
| BsmFI | GGGAC | 4 cut(s) | 141, 647, 1696, 2022 |
| BsmI | GAATGC | 3 cut(s) | 457, 777, 2759 |
| Bso31I | GGTCTC | 1 cut(s) | 3162 |
| BsoBI | CYCGRG | 2 cut(s) | 525, 795 |
| Bsp1407I | TGTACA | 1 cut(s) | 2806 |
| BspACI | CCGC | 5 cut(s) | 34, 75, 398, 2308, 2471 |
| BspCNI | CTCAG | 9 cut(s) | 55, 441, 667, 776, 1496, 1798, 2074, 2653, 3268 |
| BspHI | TCATGA | 2 cut(s) | 2254, 2281 |
| BspLI | GGNNCC | 4 cut(s) | 6, 129, 1398, 3492 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BspPI | GGATC | 6 cut(s) | 806, 1219, 1635, 1660, 2983, 3212 |
| BspT107I | GGYRCC | 1 cut(s) | 3490 |
| BspTNI | GGTCTC | 1 cut(s) | 3162 |
| BsrDI | GCAATG | 3 cut(s) | 376, 1781, 3054 |
| BsrFI | RCCGGY | 1 cut(s) | 1399 |
| BsrGI | TGTACA | 1 cut(s) | 2806 |
| BssAI | RCCGGY | 1 cut(s) | 1399 |
| BssECI | CCNNGG | 8 cut(s) | 524, 1644, 1958, 2059, 2069, 2796, 2894, 3410 |
| BssSI | CACGAG | 3 cut(s) | 783, 2028, 2670 |
| BssT1I | CCWWGG | 3 cut(s) | 1958, 2059, 2894 |
| Bst2BI | CACGAG | 3 cut(s) | 783, 2028, 2670 |
| Bst2UI | CCWGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| Bst4CI | ACNGT | 9 cut(s) | 46, 910, 1866, 2275, 2589, 2747, 2800, 2954, 3414 |
| Bst6I | CTCTTC | 3 cut(s) | 98, 533, 1100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2564 |
| BstAUI | TGTACA | 1 cut(s) | 2806 |
| BstBAI | YACGTR | 1 cut(s) | 1913 |
| BstC8I | GCNNGC | 8 cut(s) | 521, 1003, 1401, 2267, 2471, 2774, 2910, 3404 |
| BstDSI | CCRYGG | 2 cut(s) | 2796, 3410 |
| BstF5I | GGATG | 7 cut(s) | 485, 775, 1156, 2233, 2344, 2727, 3406 |
| BstHHI | GCGC | 4 cut(s) | 219, 655, 1325, 1852 |
| BstMAI | GTCTC | 8 cut(s) | 604, 1182, 1426, 2014, 2386, 2631, 3007, 3162 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 225, 659, 1703, 2564, 2639, 2896, 2905, 3044, 3371 |
| BstNI | CCWGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| BstNSI | RCATGY | 4 cut(s) | 659, 740, 1005, 3342 |
| BstSCI | CCNGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstSLI | GKGCMC | 3 cut(s) | 1925, 1948, 3327 |
| BstSNI | TACGTA | 1 cut(s) | 1913 |
| BstV1I | GCAGC | 6 cut(s) | 193, 196, 674, 1877, 2570, 3022 |
| BstV2I | GAAGAC | 4 cut(s) | 733, 834, 1794, 1886 |
| BstX2I | RGATCY | 4 cut(s) | 1640, 1652, 2975, 3217 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1645, 2747 |
| BstYI | RGATCY | 4 cut(s) | 1640, 1652, 2975, 3217 |
| BsuI | GTATCC | 1 cut(s) | 583 |
| BtgI | CCRYGG | 2 cut(s) | 2796, 3410 |
| BtgZI | GCGATG | 2 cut(s) | 329, 3173 |
| BtsCI | GGATG | 7 cut(s) | 485, 775, 1156, 2233, 2344, 2727, 3406 |
| BtsI | GCAGTG | 4 cut(s) | 219, 275, 355, 1012 |
| Cac8I | GCNNGC | 8 cut(s) | 521, 1003, 1401, 2267, 2471, 2774, 2910, 3404 |
| CaiI | CAGNNNCTG | 4 cut(s) | 296, 1685, 2564, 3124 |
| CciI | TCATGA | 2 cut(s) | 2254, 2281 |
| CfoI | GCGC | 4 cut(s) | 219, 655, 1325, 1852 |
| Cfr10I | RCCGGY | 1 cut(s) | 1399 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 128, 2468, 3184, 3245 |
| CseI | GACGC | 1 cut(s) | 2648 |
| CsiI | ACCWGGT | 2 cut(s) | 2605, 3241 |
| Csp6I | GTAC | 9 cut(s) | 288, 906, 1365, 1910, 1987, 2801, 2807, 3210, 3491 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2785, 2820 |
| CviQI | GTAC | 9 cut(s) | 288, 906, 1365, 1910, 1987, 2801, 2807, 3210, 3491 |
| DraI | TTTAAA | 3 cut(s) | 1542, 1872, 2763 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1028 |
| EaeI | YGGCCR | 2 cut(s) | 517, 2827 |
| Eam1104I | CTCTTC | 3 cut(s) | 98, 533, 1100 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1028 |
| EarI | CTCTTC | 3 cut(s) | 98, 533, 1100 |
| EciI | GGCGGA | 1 cut(s) | 90 |
| Ecl136II | GAGCTC | 2 cut(s) | 762, 2654 |
| Eco105I | TACGTA | 1 cut(s) | 1913 |
| Eco130I | CCWWGG | 3 cut(s) | 1958, 2059, 2894 |
| Eco147I | AGGCCT | 2 cut(s) | 56, 1553 |
| Eco24I | GRGCYC | 2 cut(s) | 764, 2656 |
| Eco31I | GGTCTC | 1 cut(s) | 3162 |
| Eco32I | GATATC | 1 cut(s) | 1497 |
| Eco47I | GGWCC | 2 cut(s) | 128, 3245 |
| Eco53kI | GAGCTC | 2 cut(s) | 762, 2654 |
| Eco57I | CTGAAG | 4 cut(s) | 363, 1035, 1296, 2823 |
| Eco88I | CYCGRG | 2 cut(s) | 525, 795 |
| EcoICRI | GAGCTC | 2 cut(s) | 762, 2654 |
| EcoRII | CCWGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| EcoRV | GATATC | 1 cut(s) | 1497 |
| EcoT14I | CCWWGG | 3 cut(s) | 1958, 2059, 2894 |
| EcoT22I | ATGCAT | 2 cut(s) | 571, 777 |
| EcoT38I | GRGCYC | 2 cut(s) | 764, 2656 |
| ErhI | CCWWGG | 3 cut(s) | 1958, 2059, 2894 |
| Esp3I | CGTCTC | 1 cut(s) | 2631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1008, 1040 |
| FaqI | GGGAC | 4 cut(s) | 141, 647, 1696, 2022 |
| FauI | CCCGC | 1 cut(s) | 2478 |
| FauNDI | CATATG | 2 cut(s) | 565, 3021 |
| FbaI | TGATCA | 1 cut(s) | 2278 |
| FblI | GTMKAC | 1 cut(s) | 1448 |
| Fnu4HI | GCNGC | 6 cut(s) | 207, 210, 663, 1891, 2559, 3036 |
| FokI | GGATG | 7 cut(s) | 492, 762, 1163, 2220, 2351, 2714, 3393 |
| FriOI | GRGCYC | 2 cut(s) | 764, 2656 |
| Fsp4HI | GCNGC | 6 cut(s) | 207, 210, 663, 1891, 2559, 3036 |
| FspBI | CTAG | 4 cut(s) | 1299, 2490, 2979, 3101 |
| FspI | TGCGCA | 2 cut(s) | 218, 654 |
| GlaI | GCGC | 4 cut(s) | 218, 654, 1324, 1851 |
| GluI | GCNGC | 6 cut(s) | 207, 210, 663, 1891, 2559, 3036 |
| GsaI | CCCAGC | 1 cut(s) | 1323 |
| GsuI | CTGGAG | 5 cut(s) | 891, 1374, 1427, 1825, 3121 |
| HapII | CCGG | 3 cut(s) | 1190, 1400, 3362 |
| HgaI | GACGC | 1 cut(s) | 2648 |
| HhaI | GCGC | 4 cut(s) | 219, 655, 1325, 1852 |
| Hin6I | GCGC | 4 cut(s) | 217, 653, 1323, 1850 |
| HinP1I | GCGC | 4 cut(s) | 217, 653, 1323, 1850 |
| HincII | GTYRAC | 3 cut(s) | 2592, 2603, 2667 |
| HindII | GTYRAC | 3 cut(s) | 2592, 2603, 2667 |
| HindIII | AAGCTT | 1 cut(s) | 410 |
| HpaII | CCGG | 3 cut(s) | 1190, 1400, 3362 |
| HphI | GGTGA | 4 cut(s) | 1007, 1571, 2177, 3231 |
| Hpy166II | GTNNAC | 9 cut(s) | 359, 1449, 1923, 1946, 2592, 2603, 2667, 3325, 3419 |
| Hpy8I | GTNNAC | 9 cut(s) | 359, 1449, 1923, 1946, 2592, 2603, 2667, 3325, 3419 |
| Hpy99I | CGWCG | 1 cut(s) | 1702 |
| HpyCH4III | ACNGT | 9 cut(s) | 46, 910, 1866, 2275, 2589, 2747, 2800, 2954, 3414 |
| HpyCH4IV | ACGT | 4 cut(s) | 406, 1759, 1912, 2863 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 225, 659, 1703, 2564, 2639, 2896, 2905, 3044, 3371 |
| HpySE526I | ACGT | 4 cut(s) | 406, 1759, 1912, 2863 |
| HspAI | GCGC | 4 cut(s) | 217, 653, 1323, 1850 |
| KpnI | GGTACC | 1 cut(s) | 3494 |
| KroI | GCCGGC | 1 cut(s) | 1399 |
| KroNI | GCCGGC | 1 cut(s) | 1401 |
| Ksp22I | TGATCA | 1 cut(s) | 2278 |
| LmnI | GCTCC | 7 cut(s) | 138, 1396, 1432, 1446, 1717, 1844, 2704 |
| Lsp1109I | GCAGC | 6 cut(s) | 193, 196, 674, 1877, 2570, 3022 |
| MabI | ACCWGGT | 2 cut(s) | 2605, 3241 |
| MaeI | CTAG | 4 cut(s) | 1299, 2490, 2979, 3101 |
| MaeII | ACGT | 4 cut(s) | 406, 1759, 1912, 2863 |
| MaeIII | GTNAC | 3 cut(s) | 273, 1579, 3394 |
| MflI | RGATCY | 4 cut(s) | 1640, 1652, 2975, 3217 |
| MlsI | TGGCCA | 2 cut(s) | 519, 2829 |
| MluNI | TGGCCA | 2 cut(s) | 519, 2829 |
| MlyI | GAGTC | 3 cut(s) | 2172, 2662, 3128 |
| MmeI | TCCRAC | 4 cut(s) | 599, 816, 1981, 3409 |
| Mox20I | TGGCCA | 2 cut(s) | 519, 2829 |
| Mph1103I | ATGCAT | 2 cut(s) | 571, 777 |
| MroNI | GCCGGC | 1 cut(s) | 1399 |
| MscI | TGGCCA | 2 cut(s) | 519, 2829 |
| MslI | CAYNNNNRTG | 4 cut(s) | 233, 333, 462, 2339 |
| Msp20I | TGGCCA | 2 cut(s) | 519, 2829 |
| MspI | CCGG | 3 cut(s) | 1190, 1400, 3362 |
| MspR9I | CCNGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| Mva1269I | GAATGC | 3 cut(s) | 457, 777, 2759 |
| MvaI | CCWGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 225, 659, 1703, 2564, 2639, 2896, 2905, 3044, 3371 |
| NaeI | GCCGGC | 1 cut(s) | 1401 |
| NdeI | CATATG | 2 cut(s) | 565, 3021 |
| NgoMIV | GCCGGC | 1 cut(s) | 1399 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 129, 1398, 3492 |
| NmeAIII | GCCGAG | 1 cut(s) | 1826 |
| NmuCI | GTSAC | 3 cut(s) | 273, 1579, 3394 |
| NsbI | TGCGCA | 2 cut(s) | 218, 654 |
| NsiI | ATGCAT | 2 cut(s) | 571, 777 |
| NspI | RCATGY | 4 cut(s) | 659, 740, 1005, 3342 |
| PaeI | GCATGC | 1 cut(s) | 1005 |
| PagI | TCATGA | 2 cut(s) | 2254, 2281 |
| PceI | AGGCCT | 2 cut(s) | 56, 1553 |
| PctI | GAATGC | 3 cut(s) | 457, 777, 2759 |
| PdiI | GCCGGC | 1 cut(s) | 1401 |
| PfoI | TCCNGGA | 1 cut(s) | 2730 |
| PkrI | GCNGC | 6 cut(s) | 208, 211, 664, 1892, 2560, 3037 |
| PleI | GAGTC | 3 cut(s) | 2172, 2662, 3128 |
| PpsI | GAGTC | 3 cut(s) | 2172, 2662, 3128 |
| Ppu21I | YACGTR | 1 cut(s) | 1913 |
| PshBI | ATTAAT | 1 cut(s) | 918 |
| Psp124BI | GAGCTC | 2 cut(s) | 764, 2656 |
| Psp6I | CCWGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| PspFI | CCCAGC | 1 cut(s) | 1319 |
| PspGI | CCWGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 129, 1398, 3492 |
| PspPI | GGNCC | 5 cut(s) | 4, 128, 2468, 3184, 3245 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 251, 283 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PstNI | CAGNNNCTG | 4 cut(s) | 296, 1685, 2564, 3124 |
| PsuI | RGATCY | 4 cut(s) | 1640, 1652, 2975, 3217 |
| RsaI | GTAC | 9 cut(s) | 289, 907, 1366, 1911, 1988, 2802, 2808, 3211, 3492 |
| RsaNI | GTAC | 9 cut(s) | 288, 906, 1365, 1910, 1987, 2801, 2807, 3210, 3491 |
| RseI | CAYNNNNRTG | 4 cut(s) | 233, 333, 462, 2339 |
| SacI | GAGCTC | 2 cut(s) | 764, 2656 |
| SatI | GCNGC | 6 cut(s) | 207, 210, 663, 1891, 2559, 3036 |
| Sau96I | GGNCC | 5 cut(s) | 4, 128, 2468, 3184, 3245 |
| ScaI | AGTACT | 1 cut(s) | 1988 |
| SchI | GAGTC | 3 cut(s) | 2172, 2662, 3128 |
| ScrFI | CCNGG | 5 cut(s) | 1646, 2607, 2732, 2831, 3243 |
| SexAI | ACCWGGT | 2 cut(s) | 2605, 3241 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SinI | GGWCC | 2 cut(s) | 128, 3245 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 233, 333, 462, 2339 |
| SmlI | CTYRAG | 4 cut(s) | 152, 2964, 3004, 3159 |
| SmoI | CTYRAG | 4 cut(s) | 152, 2964, 3004, 3159 |
| SnaBI | TACGTA | 1 cut(s) | 1913 |
| SphI | GCATGC | 1 cut(s) | 1005 |
| SseBI | AGGCCT | 2 cut(s) | 56, 1553 |
| SsiI | CCGC | 5 cut(s) | 34, 75, 398, 2308, 2471 |
| SspMI | CTAG | 4 cut(s) | 1299, 2490, 2979, 3101 |
| SstI | GAGCTC | 2 cut(s) | 764, 2656 |
| StuI | AGGCCT | 2 cut(s) | 56, 1553 |
| StyD4I | CCNGG | 5 cut(s) | 1644, 2605, 2730, 2829, 3241 |
| StyI | CCWWGG | 3 cut(s) | 1958, 2059, 2894 |
| TaaI | ACNGT | 9 cut(s) | 46, 910, 1866, 2275, 2589, 2747, 2800, 2954, 3414 |
| TaiI | ACGT | 4 cut(s) | 409, 1762, 1915, 2866 |
| TaqI | TCGA | 6 cut(s) | 437, 818, 1037, 1634, 2949, 3011 |
| TatI | WGTACW | 3 cut(s) | 1986, 2806, 3209 |
| TseFI | GTSAC | 3 cut(s) | 273, 1579, 3394 |
| TseI | GCWGC | 6 cut(s) | 206, 209, 662, 1890, 2558, 3035 |
| Tsp45I | GTSAC | 3 cut(s) | 273, 1579, 3394 |
| TspDTI | ATGAA | 9 cut(s) | 272, 489, 552, 660, 1149, 1548, 2112, 2243, 2513 |
| TspGWI | ACGGA | 3 cut(s) | 115, 1489, 2497 |
| VneI | GTGCAC | 3 cut(s) | 1921, 1944, 3323 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 3245 |
| VspI | ATTAAT | 1 cut(s) | 918 |
| XapI | RAATTY | 9 cut(s) | 705, 1262, 2327, 2398, 2414, 2458, 2881, 3432, 3444 |
| XbaI | TCTAGA | 2 cut(s) | 1298, 3100 |
| XceI | RCATGY | 4 cut(s) | 659, 740, 1005, 3342 |
| XmiI | GTMKAC | 1 cut(s) | 1448 |
| XspI | CTAG | 4 cut(s) | 1299, 2490, 2979, 3101 |
| ZrmI | AGTACT | 1 cut(s) | 1988 |
| Zsp2I | ATGCAT | 2 cut(s) | 571, 777 |