MD04G1209900.v1.1

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014661
Physical Location & Seq
Forward (+)
29469796 .. 29470989
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1209900.v1.1.491

Sequence Viewer

Length: 195 bp
ATGCTTCCTTACATTCTAATTGGTGTCGATCGAAATGACCTCGAGAAGGTGTTCATACAGCTTACGCTCGAGTTTCTGACAAAGCAGAAATTCGAAGCATATGACTCGAACGGTGCTGTTGTTGCTGGAGATAAAACAAAGGAGGTCCTTGTCCGCGATATCTGGGTATTTGAAAAATCTCTCTTCCAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

65

Amino Acids

7.42

Weight (kDa)

4.89

Isoelectric Point (pI)

20.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 20 - 62 6.4e-08 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Ama87I CYCGRG 2 cut(s) 41, 68
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 2 cut(s) 41, 68
AvaII GGWCC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 2 cut(s) 41, 68
BmgT120I GGNCC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 41, 68
BslI CCNNNNNNNGG 1 cut(s) 46
BsoBI CYCGRG 2 cut(s) 41, 68
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 93
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstUI CGCG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 145
CviJI RGCY 2 cut(s) 61, 190
CviKI_1 RGCY 2 cut(s) 61, 190
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 41, 68
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 145
EcoRV GATATC 1 cut(s) 160
FaiI YATR 3 cut(s) 56, 100, 102
FauNDI CATATG 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 147
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 111, 148
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 175
MluCI AATT 2 cut(s) 18, 89
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 50, 136
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 193
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 100
NdeII GATC 1 cut(s) 28
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 2 cut(s) 41, 68
PdmI GAANNNNTTC 1 cut(s) 50
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 68
PvuI CGATCG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 193
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 42, 51, 63, 147
Sfr274I CTCGAG 2 cut(s) 41, 68
SfuI TTCGAA 1 cut(s) 93
SgeI CNNG 9 cut(s) 53, 55, 80, 82, 118, 138, 161, 167, 175
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 2 cut(s) 41, 68
SmlI CTYRAG 2 cut(s) 41, 68
SmoI CTYRAG 2 cut(s) 41, 68
Sse9I AATT 2 cut(s) 18, 89
SsiI CCGC 1 cut(s) 154
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 6 cut(s) 27, 31, 42, 69, 93, 107
TasI AATT 2 cut(s) 18, 89
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 2 cut(s) 41, 68
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.