Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Reverse (-)

43538831 .. 43557463

Gene Structure 18633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCTTACTAGTCAAGCTTCTTCTTTGATCCAAGTTAGAGAAGCTCGAGTTGCTGCAACATCTACTATTAATGGACATCTTACAACCATAGATGACACCCTTTCTACTTTGAACACTAGCAATGAACTCGAAGCTTTGGCACTGAATTTTGGTTGTGATTCAGTTTTGCATGGTGGTGCCTTTTCACCTGAAGGCCAAAGGCCACTATCCTATCCACTCTTCAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

76

Amino Acids

8.07

Weight (kDa)

4.69

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	112, 223
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	3 cut(s)	17, 44, 134
AluI	AGCT	3 cut(s)	17, 44, 134
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	193, 200
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	145
AseI	ATTAAT	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 117
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	195, 202
BshNI	GGYRCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	195, 202
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	195, 202
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	127
BssMI	GATC	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	195, 202
BtsIMutI	CAGTG	1 cut(s)	140
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	17, 44, 134, 195, 202
CviKI_1	RGCY	5 cut(s)	17, 44, 134, 195, 202
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	45
FaeI	CATG	1 cut(s)	173
FaiI	YATR	2 cut(s)	89, 171
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	9, 117
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	195, 202
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	2 cut(s)	15, 132
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	56, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	1 cut(s)	201
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	9, 117
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	2 cut(s)	12, 211
MluCI	AATT	1 cut(s)	145
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	27
SetI	ASST	5 cut(s)	19, 46, 136, 190, 230
Sfr274I	CTCGAG	1 cut(s)	45
SgeI	CNNG	9 cut(s)	21, 26, 44, 57, 59, 129, 140, 182, 200
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	9, 117
TaqI	TCGA	2 cut(s)	46, 129
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	45
XspI	CTAG	2 cut(s)	9, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.