Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Forward (+)

20630481 .. 20632034

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCTTCTCCGGTGATTCGTCGAATCGGAAGCACGTGGATTTGGGGGGACGGAGTACGAATGAGAGGGATAGGCGAGCTTCGGAGCAAAAGAGGTTGGAGATTCCGGACAAGTTTTATAGCCAGCACTTGTTGAAGAAATGGCTCTGTTGGCTTACAATCGCACTCTCAAGCTCTCCTCACCAGGGGGAAGATTTGGACTTTGCTTATGATAGCATTTCTGCCTTTTCTTCCTGCCGAGATAACCAGGAGGCGGTTTTCGCAGCTGAAGAGGGACTCAAAGATATTCGGGATGCAACTTTGGCATATAAATCTAAAGCTTTACAGTTGCAGAAGCAGCTTAGACGTCTGCACTCTCAATTTGACATGCTTACTGGTCAAGCTTCTATTTTGATCCAAGGTAGACAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

137

Amino Acids

15.65

Weight (kDa)

8.6

Isoelectric Point (pI)

62.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS-augmin3	PF14932	62 - 136	1.2e-12	HAUS augmin-like complex subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	185, 253
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	183, 246
AluBI	AGCT	7 cut(s)	80, 174, 266, 320, 340, 383, 410
AluI	AGCT	7 cut(s)	80, 174, 266, 320, 340, 383, 410
AlwI	GGATC	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	263, 337
AsuHPI	GGTGA	2 cut(s)	26, 173
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	275, 349
BciT130I	CCWGG	2 cut(s)	185, 248
BisI	GCNGC	2 cut(s)	264, 338
BlsI	GCNGC	2 cut(s)	265, 339
Bme1390I	CCNGG	2 cut(s)	185, 248
BmrFI	CCNGG	2 cut(s)	185, 248
BmsI	GCATC	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	37
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	184, 397
BsaWI	WCCGGW	2 cut(s)	11, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 253
Bse1I	ACTGG	1 cut(s)	379
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	185, 248
BseDI	CCNNGG	2 cut(s)	184, 397
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	185, 253
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	275, 349
BsgI	GTGCAG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	12, 107
BslFI	GGGAC	2 cut(s)	63, 288
BslI	CCNNNNNNNGG	2 cut(s)	185, 253
BsmFI	GGGAC	2 cut(s)	63, 288
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	106
BspPI	GGATC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	184, 397
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	185, 248
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	78, 125
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 260, 302, 337
BstNI	CCWGG	2 cut(s)	185, 248
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	183, 246
BstV1I	GCAGC	2 cut(s)	275, 349
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	78, 125
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	183, 246
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	370
FaiI	YATR	5 cut(s)	120, 210, 307, 309, 368
FaqI	GGGAC	2 cut(s)	63, 288
FatI	CATG	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	264, 338
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	264, 338
GluI	GCNGC	2 cut(s)	264, 338
HapII	CCGG	2 cut(s)	12, 107
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	370
HindIII	AAGCTT	3 cut(s)	318, 381, 408
HinfI	GANTC	4 cut(s)	17, 25, 103, 276
HpaII	CCGG	2 cut(s)	12, 107
HphI	GGTGA	2 cut(s)	26, 173
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	30, 85
Hpy188III	TCNNGA	2 cut(s)	107, 290
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	36, 346
HpyCH4V	TGCA	3 cut(s)	296, 331, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 260, 302, 337
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	36, 346
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	9 cut(s)	25, 120, 137, 170, 197, 233, 247, 260, 360
Lsp1109I	GCAGC	2 cut(s)	275, 349
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	2 cut(s)	36, 346
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	4 cut(s)	148, 203, 222, 281
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	60, 87, 189, 244, 265
MroI	TCCGGA	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	12, 107
MspR9I	CCNGG	2 cut(s)	185, 248
MvaI	CCWGG	2 cut(s)	185, 248
MwoI	GCNNNNNNNGC	4 cut(s)	151, 260, 302, 337
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	1 cut(s)	370
NmeAIII	GCCGAG	1 cut(s)	263
NspI	RCATGY	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	17, 25, 103
PkrI	GCNGC	2 cut(s)	265, 339
PleI	GAGTC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	183, 246
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	2 cut(s)	183, 246
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	2 cut(s)	264, 338
Sau3AI	GATC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	185, 248
SfaNI	GCATC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	183, 246
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	2 cut(s)	39, 349
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	17, 25, 103
TseI	GCWGC	2 cut(s)	263, 337
TspGWI	ACGGA	1 cut(s)	67
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	403
ZraI	GACGTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.