Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003261.1

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Reverse (-)

52822 .. 54424

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003261.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttcttctccgaagattcgtcgaattggaagcacgtggatttggggggacggagtacgaaggagagggataggcagaagcttttggagcaaaagagattcaggacaagttttgtagccagcacactgttgaagaaatggctctgttggcttacaattgcgctctcaagctctcctcaccagggggaagatttggactttgcttatgatagcatttctgccttttcttccaaccgagacaaccaagaggcggtgaagcaattggaaaatcctgagatagttttcaatactatcattgggctcgttgttcgtctgacagaacatggtttgattcactctgacttcaatgaatttaacattatgattgatgatgacgagaagatcaccatgattgattttccccaaatggtctctgtatcacatcgtaatgcacaaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

146

Amino Acids

16.91

Weight (kDa)

5.3

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	350
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	182, 250
AgsI	TTSAA	3 cut(s)	133, 286, 346
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	82, 171
AluI	AGCT	2 cut(s)	82, 171
Alw26I	GTCTC	2 cut(s)	231, 415
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	170, 265, 376
BanII	GRGCYC	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	231, 415
Bme1390I	CCNGG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 250
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	182, 250
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	182, 250
BsmAI	GTCTC	2 cut(s)	231, 415
BsmFI	GGGAC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	231, 415
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 148
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	323, 388
CviJI	RGCY	6 cut(s)	82, 119, 142, 151, 171, 301
CviKI_1	RGCY	6 cut(s)	82, 119, 142, 151, 171, 301
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	415
Eco72I	CACGTG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	2 cut(s)	326, 391
FaiI	YATR	4 cut(s)	207, 324, 362, 389
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	322, 387
FriOI	GRGCYC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	326, 391
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	17, 99, 331
HphI	GGTGA	3 cut(s)	170, 265, 376
Hpy188I	TCNGA	3 cut(s)	13, 315, 340
Hpy188III	TCNNGA	2 cut(s)	103, 272
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 148
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	326, 391
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	88, 133, 167, 194, 285
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	5 cut(s)	26, 145, 200, 219, 391
MfeI	CAATTG	2 cut(s)	156, 260
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	25, 156, 260, 350
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	60, 186, 241
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	2 cut(s)	156, 260
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	88, 148
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	326, 391
PfeI	GAWTC	3 cut(s)	17, 99, 331
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	3 cut(s)	39, 84, 173
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	25, 156, 260, 350
SsiI	CCGC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	25, 156, 260, 350
TfiI	GAWTC	3 cut(s)	17, 99, 331
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.