Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Reverse (-)

46270646 .. 46282007

Gene Structure 11362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCAGTACTATGTGGTGGTAATGGGGAGGGTTGCTATTCAAAGGATGCAACTCTAGCATATAAATATGAAGCTTTACAGTTGCAGAAGCAGCTTAGACGTCTGCACTCTCAATTTGACATGCTTACTGGTCAAGCTTCTTCTTTGATCCAAGGTAGACAAGCTCGAGTTGCTGCAACATCTACTATTGACACCCTTTCTGCAAAAAAATTGCAGGCCCTCCAAATCGCTGTGCGCCGCCGACAAGAAATTCGCTGTCAAATAGCAAGGAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

10.22

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	4 cut(s)	74, 94, 137, 164
AluI	AGCT	4 cut(s)	74, 94, 137, 164
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	91, 173
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	103, 160
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	92, 174, 238
BlsI	GCNGC	3 cut(s)	93, 175, 239
BmcAI	AGTACT	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	217
BmsI	GCATC	1 cut(s)	37
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	103, 160
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	165
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	147
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 91, 170
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	103, 160
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	74, 94, 137, 164, 218, 274
CviKI_1	RGCY	6 cut(s)	74, 94, 137, 164, 218, 274
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	1 cut(s)	124
FaiI	YATR	5 cut(s)	13, 61, 63, 69, 122
FatI	CATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	92, 174, 238
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	92, 174, 238
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	92, 174, 238
HaeIII	GGCC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	72, 135
Hpy166II	GTNNAC	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	50, 85, 106, 176, 203, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 91, 170
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	114, 200
Lsp1109I	GCAGC	2 cut(s)	103, 160
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	132
MluCI	AATT	3 cut(s)	113, 209, 249
MnlI	CCTC	3 cut(s)	22, 230, 264
MwoI	GCNNNNNNNGC	3 cut(s)	56, 91, 170
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	93, 175, 239
PspPI	GGNCC	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	165
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	92, 174, 238
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	9
SetI	ASST	6 cut(s)	76, 96, 103, 139, 157, 166
SfaNI	GCATC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	113, 209, 249
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	113, 209, 249
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	91, 173
TspDTI	ATGAA	1 cut(s)	84
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	101
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.