Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Reverse (-)

29043409 .. 29046991

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1161700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCCAGAGATACTTCTCGGATTCTGAAAGAGAGTGAAGAAGAACTTCTAATGGTCTATGCACTTATGTATGTACACGACAAGAGGCTTGGAAAGGCGCAGCATTTCCTTTTCATCTCTTCCTCGACTGTCACTGTGATGACTTCTGGTATCTGTACTACTACCCACAACAGGCAGCTTGTTCTTGTAGCGGTTGGCAGCTTCGAATGGCCCTTCCAATACGACGACGCTCGACCCATCCTCGACTGGATCTGCTCGAGCCTCCGCCCCTCCAACGTCCTTTCTCTCCCCGTACTCTCCCAATATGAGCAATTTGTACAGGAGGGGAAGCTATTAGAGGGAGAGGATTTGTACTTTGCTTACGATAGCAGTTCGGCCTTTGCTTCCAGGCCAGACAACCAGGAGGCGGTTTTTGCAGCCGAGGAGGGACTCAAAGATATCCGGGATGCAACTTTGGCCTATAAAGCTGAAGCTTTACAGTTGCAGAGACAGCTTAGGCATCTGCATTCCCAATTCGACATGCTTACTGATCAGGCTTCTACTCTGATCCAAGGGAGACGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

5.21

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS-augmin3	PF14932	70 - 187	2.1e-31	HAUS augmin-like complex subunit 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	191, 265, 407
AclWI	GGATC	2 cut(s)	257, 541
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	5 cut(s)	75, 157, 294, 318, 353
AfiI	CCNNNNNNNGG	2 cut(s)	171, 406
AjnI	CCWGG	2 cut(s)	386, 399
AluBI	AGCT	6 cut(s)	178, 201, 331, 467, 473, 493
AluI	AGCT	6 cut(s)	178, 201, 331, 467, 473, 493
Alw26I	GTCTC	2 cut(s)	481, 550
AlwI	GGATC	2 cut(s)	257, 541
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	209, 375, 389, 456
ApeKI	GCWGC	4 cut(s)	100, 175, 198, 416
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	112, 187, 210, 428
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	388, 401
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	481, 550
BisI	GCNGC	4 cut(s)	101, 176, 199, 417
BlsI	GCNGC	4 cut(s)	102, 177, 200, 418
Bme1390I	CCNGG	3 cut(s)	388, 401, 443
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	210
BmrFI	CCNGG	3 cut(s)	388, 401, 443
BmsI	GCATC	2 cut(s)	436, 508
Bpu10I	CCTNAGC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	420, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 406
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	388, 401
BseDI	CCNNGG	2 cut(s)	420, 550
BseGI	GGATG	2 cut(s)	237, 451
BseLI	CCNNNNNNNGG	2 cut(s)	171, 406
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	4 cut(s)	112, 187, 210, 428
BshFI	GGCC	4 cut(s)	211, 377, 391, 458
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	171, 406
BsmAI	GTCTC	2 cut(s)	481, 550
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	4 cut(s)	211, 377, 391, 458
BsoBI	CYCGRG	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1407I	TGTACA	2 cut(s)	73, 316
Bsp143I	GATC	3 cut(s)	249, 529, 546
BspACI	CCGC	3 cut(s)	191, 265, 407
BspANI	GGCC	4 cut(s)	211, 377, 391, 458
BspPI	GGATC	2 cut(s)	257, 541
BspT104I	TTCGAA	1 cut(s)	204
BsrGI	TGTACA	2 cut(s)	73, 316
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	420, 550
BssMI	GATC	3 cut(s)	249, 529, 546
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	388, 401
Bst4CI	ACNGT	3 cut(s)	130, 136, 480
Bst6I	CTCTTC	1 cut(s)	124
BstAUI	TGTACA	2 cut(s)	73, 316
BstBI	TTCGAA	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	237, 451
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	252, 532, 549
BstMAI	GTCTC	2 cut(s)	481, 550
BstMBI	GATC	3 cut(s)	249, 529, 546
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 455, 464, 490
BstNI	CCWGG	2 cut(s)	388, 401
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	386, 399, 441
BstV1I	GCAGC	4 cut(s)	112, 187, 210, 428
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	211, 377, 391, 458
BtsCI	GGATG	2 cut(s)	237, 451
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	5 cut(s)	74, 156, 293, 317, 352
CviAII	CATG	2 cut(s)	520, 564
CviQI	GTAC	5 cut(s)	74, 156, 293, 317, 352
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	3 cut(s)	251, 531, 548
DpnII	GATC	3 cut(s)	249, 529, 546
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	386, 399
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	2 cut(s)	523, 567
FaiI	YATR	7 cut(s)	60, 68, 72, 306, 462, 521, 565
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	2 cut(s)	519, 563
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	101, 176, 199, 417
FokI	GGATG	2 cut(s)	224, 458
Fsp4HI	GCNGC	4 cut(s)	101, 176, 199, 417
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	101, 176, 199, 417
HaeIII	GGCC	4 cut(s)	211, 377, 391, 458
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	523, 567
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	2 cut(s)	22, 429
HpaII	CCGG	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	21, 27, 546
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	227, 230
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	130, 136, 480
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	62, 416, 449, 484, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 455, 464, 490
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	523, 567
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	249, 529, 546
Lsp1109I	GCAGC	4 cut(s)	112, 187, 210, 428
LweI	GCATC	2 cut(s)	436, 508
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	3 cut(s)	251, 531, 548
MboI	GATC	3 cut(s)	249, 529, 546
MboII	GAAGA	3 cut(s)	50, 53, 111
MflI	RGATCY	1 cut(s)	249
MluCI	AATT	2 cut(s)	311, 512
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	3 cut(s)	388, 401, 443
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	388, 401
MwoI	GCNNNNNNNGC	4 cut(s)	413, 455, 464, 490
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	3 cut(s)	249, 529, 546
NlaIII	CATG	2 cut(s)	523, 567
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	256
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	102, 177, 200, 418
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	386, 399
PspGI	CCWGG	2 cut(s)	386, 399
PspPI	GGNCC	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	5 cut(s)	75, 157, 294, 318, 353
RsaNI	GTAC	5 cut(s)	74, 156, 293, 317, 352
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	4 cut(s)	101, 176, 199, 417
Sau3AI	GATC	3 cut(s)	249, 529, 546
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	3 cut(s)	388, 401, 443
SetI	ASST	7 cut(s)	180, 203, 279, 333, 469, 475, 495
SfaNI	GCATC	2 cut(s)	436, 508
Sfr274I	CTCGAG	1 cut(s)	256
SfuI	TTCGAA	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	311, 512
SsiI	CCGC	3 cut(s)	191, 265, 407
StyD4I	CCNGG	3 cut(s)	386, 399, 441
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	130, 136, 480
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	6 cut(s)	125, 204, 232, 243, 257, 516
TasI	AATT	2 cut(s)	311, 512
TatI	WGTACW	4 cut(s)	73, 155, 316, 351
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	4 cut(s)	100, 175, 198, 416
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.