Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Reverse (-)

28596640 .. 28598461

Gene Structure 1822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTCTTCTCCGACGATTCGTCAAATCGGAAGCACGTGGATTTGGGGGGACGGAGTACGAAGGAGAGGGATAGGCAGAAGCTTTTGGAGCAAAAGAGATTCCAGACAAGTTTTGTAGCCAGCACACTATTGAAGAAATGGCTCTGTTGGCTTACAATTGCGCTCTCAAGCTCTCCTCACCAGGGGGAAGATTTGGACTTTGCTTATGATAGCATTTCTGCCTTTTCTTCCAACCGAGACAACCAGGAGGCGGTTTTCACAGCTGAAGAGGGACTCAAAGATATTCGGCATTGTGTGATTATGTCACTAGTACCAGGCTACCCACTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGATAGTTTTTTATACTATCATTGGGCTCGTTGTTCGTCTGACAGAACATGGTTTGATTCACTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGATCACCATGATTGATTTTCCCCAAATGGTCTCTGTATCACATCGTAATGCACAAATGTACTTTGACCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGCAAGAGGTCAGTAATCTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

194

Amino Acids

22.53

Weight (kDa)

5.5

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	96 - 191	1.3e-29	RIO domain
ABC1	PF03109	99 - 175	7.7e-07	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	58, 312, 521
AfiI	CCNNNNNNNGG	3 cut(s)	182, 250, 535
AgsI	TTSAA	2 cut(s)	133, 427
AhdI	GACNNNNNGTC	1 cut(s)	19
AhlI	ACTAGT	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	180, 243, 313
AluBI	AGCT	3 cut(s)	82, 171, 263
AluI	AGCT	3 cut(s)	82, 171, 263
Alw26I	GTCTC	2 cut(s)	231, 496
ApoI	RAATTY	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	170, 346, 457
BanII	GRGCYC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	37
BciT130I	CCWGG	3 cut(s)	182, 245, 315
BcoDI	GTCTC	2 cut(s)	231, 496
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	182, 245, 315
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	182, 245, 315
BpuEI	CTTGAG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 250, 535
BseBI	CCWGG	3 cut(s)	182, 245, 315
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	3 cut(s)	182, 250, 535
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	350
BslFI	GGGAC	2 cut(s)	63, 285
BslI	CCNNNNNNNGG	3 cut(s)	182, 250, 535
BsmAI	GTCTC	2 cut(s)	231, 496
BsmFI	GGGAC	2 cut(s)	63, 285
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	462
Bst2UI	CCWGG	3 cut(s)	182, 245, 315
Bst4CI	ACNGT	2 cut(s)	419, 530
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	2 cut(s)	231, 496
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 148, 337
BstNI	CCWGG	3 cut(s)	182, 245, 315
BstSCI	CCNGG	3 cut(s)	180, 243, 313
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	57, 311, 520
CviAII	CATG	2 cut(s)	404, 469
CviJI	RGCY	8 cut(s)	82, 119, 142, 151, 171, 263, 318, 382
CviKI_1	RGCY	8 cut(s)	82, 119, 142, 151, 171, 263, 318, 382
CviQI	GTAC	3 cut(s)	57, 311, 520
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	180, 243, 313
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	2 cut(s)	407, 472
FaiI	YATR	6 cut(s)	207, 302, 369, 405, 443, 470
FaqI	GGGAC	2 cut(s)	63, 285
FatI	CATG	2 cut(s)	403, 468
FriOI	GRGCYC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	407, 472
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	4 cut(s)	17, 99, 273, 412
HphI	GGTGA	3 cut(s)	170, 346, 457
Hpy188I	TCNGA	3 cut(s)	13, 30, 396
Hpy188III	TCNNGA	2 cut(s)	103, 353
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	419, 530
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	331, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 148, 337
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	407, 472
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	303, 419
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	5 cut(s)	145, 200, 219, 278, 472
MfeI	CAATTG	2 cut(s)	156, 341
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	156, 341, 431
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	36, 255
MnlI	CCTC	5 cut(s)	60, 186, 241, 262, 558
MseI	TTAA	2 cut(s)	435, 549
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	182, 245, 315
MunI	CAATTG	2 cut(s)	156, 341
MvaI	CCWGG	3 cut(s)	182, 245, 315
MwoI	GCNNNNNNNGC	3 cut(s)	88, 148, 337
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	2 cut(s)	407, 472
NmuCI	GTSAC	2 cut(s)	303, 419
PaqCI	CACCTGC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	17, 99, 412
PleI	GAGTC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	180, 243, 313
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	3 cut(s)	180, 243, 313
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	58, 312, 521
RsaNI	GTAC	3 cut(s)	57, 311, 520
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	435, 549
Sau3AI	GATC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	182, 245, 315
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	6 cut(s)	39, 84, 173, 265, 336, 569
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	3 cut(s)	156, 341, 431
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	180, 243, 313
TaaI	ACNGT	2 cut(s)	419, 530
TaiI	ACGT	1 cut(s)	39
TasI	AATT	3 cut(s)	156, 341, 431
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	3 cut(s)	17, 99, 412
Tru1I	TTAA	2 cut(s)	435, 549
Tru9I	TTAA	2 cut(s)	435, 549
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	2 cut(s)	303, 419
Tsp45I	GTSAC	2 cut(s)	303, 419
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	422
XapI	RAATTY	1 cut(s)	431
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.