Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014661

Physical Location & Seq

Genomic Coordinates Forward (+)

5181157 .. 5188599

Gene Structure 7443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGTTATCCTACTCCCAGTACTTATGGACTTCTTTTATTCCTCAGGGATGCAACTCTGGCATATAAATCTGAAGCTTTACAGTTGCAGAAGCAGCTTAGGCGTCTGCACTCTCAATTTGACATGCTTACTGGTCAAGCTTCTTCTTTGATCCAATGTAGACAAGTTCGAGTTGCTGCAACATCTACTATTGACACCCTTTCTGCAAAAAAATTGCAGGCAAAGGGTACCAAACCACCACCAAAAACAAAGAATGAGCTTAGGGCAAAAGCAAAGCAGAGACAAATGGAAGAGAAGAAAAAGAGAGATGCAAAAAGAGCAGCAGCAAAGGCAGTAGCTAGACCTGCTACAAGCCAAGGCAGACCCCCAAAATCTCCTGCCAGTAAGGGTACCGCTGCTTCTACTACTGCACAATCTTCACAAGCTTCATCAAGGTCATCTGCAAGGATCCGACAAAATGCACAGAATGCTGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

159

Amino Acids

17.28

Weight (kDa)

11.1

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD04G1209900.v1.1 MD05G1161700.v1.1
rosa_chinensis	RchiOBHm_Chr4g0415731
rosa_laevigata	RLG00000002136 RLG00000019143
rosa_multiflora	Rmu_sc0003261.1_g000017
rosa_roxburghii	Rroxscaffold_4G00300350 Rroxscaffold_5G00362520
rosa_samantha	Rh3CG071800 Rh4DG143700 Rh5CG552700 Rh7BG179400
rosa_wichuraiana	Rw5G029740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
Acc65I	GGTACC	2 cut(s)	227, 389
AccB1I	GGYRCC	2 cut(s)	227, 389
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	3 cut(s)	145, 442, 455
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	3 cut(s)	22, 229, 391
AluBI	AGCT	6 cut(s)	77, 97, 140, 259, 338, 425
AluI	AGCT	6 cut(s)	77, 97, 140, 259, 338, 425
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	145, 442, 455
ApeKI	GCWGC	5 cut(s)	94, 176, 320, 323, 395
Asp718I	GGTACC	2 cut(s)	227, 389
AxyI	CCTNAGG	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	227, 389
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BbvI	GCAGC	5 cut(s)	106, 163, 332, 335, 382
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	5 cut(s)	95, 177, 321, 324, 396
BlsI	GCNGC	5 cut(s)	96, 178, 322, 325, 397
BmcAI	AGTACT	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	229, 391, 449
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	40, 298
BmuI	ACTGGG	1 cut(s)	12
Bpu10I	CCTNAGC	2 cut(s)	98, 260
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	18, 136, 381
Bse21I	CCTNAGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	3 cut(s)	18, 136, 381
BseXI	GCAGC	5 cut(s)	106, 163, 332, 335, 382
BsgI	GTGCAG	2 cut(s)	92, 393
BshNI	GGYRCC	2 cut(s)	227, 389
BsmAI	GTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	150, 447
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	3 cut(s)	229, 391, 449
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	3 cut(s)	145, 442, 455
BspT107I	GGYRCC	2 cut(s)	227, 389
BsrI	ACTGG	3 cut(s)	18, 136, 381
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	150, 447
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	44, 98, 260
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	153, 450
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	150, 447
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 94, 100, 317, 329, 344, 467
BstNSI	RCATGY	1 cut(s)	127
BstV1I	GCAGC	5 cut(s)	106, 163, 332, 335, 382
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	219
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	21, 228, 390
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	7 cut(s)	77, 97, 140, 259, 338, 354, 425
CviKI_1	RGCY	7 cut(s)	77, 97, 140, 259, 338, 354, 425
CviQI	GTAC	3 cut(s)	21, 228, 390
DdeI	CTNAG	3 cut(s)	44, 98, 260
DpnI	GATC	2 cut(s)	152, 449
DpnII	GATC	2 cut(s)	150, 447
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	27, 64, 66, 125
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	95, 177, 321, 324, 396
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	95, 177, 321, 324, 396
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	5 cut(s)	95, 177, 321, 324, 396
HgaI	GACGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	127
HindIII	AAGCTT	3 cut(s)	75, 138, 423
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	73, 452
Hpy8I	GTNNAC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 94, 100, 317, 329, 344, 467
HpyF3I	CTNAG	3 cut(s)	44, 98, 260
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	127
KpnI	GGTACC	2 cut(s)	231, 393
Kzo9I	GATC	2 cut(s)	150, 447
LpnPI	CCDG	9 cut(s)	31, 31, 44, 117, 203, 357, 390, 394, 456
Lsp1109I	GCAGC	5 cut(s)	106, 163, 332, 335, 382
LweI	GCATC	2 cut(s)	40, 298
MaeI	CTAG	1 cut(s)	339
MalI	GATC	2 cut(s)	152, 449
MboI	GATC	2 cut(s)	150, 447
MboII	GAAGA	4 cut(s)	135, 302, 307, 408
MflI	RGATCY	1 cut(s)	447
MluCI	AATT	2 cut(s)	116, 212
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	7 cut(s)	59, 94, 100, 317, 329, 344, 467
NdeII	GATC	2 cut(s)	150, 447
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	229, 391, 449
NspI	RCATGY	1 cut(s)	127
PctI	GAATGC	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	96, 178, 322, 325, 397
PspN4I	GGNNCC	3 cut(s)	229, 391, 449
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	3 cut(s)	22, 229, 391
RsaNI	GTAC	3 cut(s)	21, 228, 390
SatI	GCNGC	5 cut(s)	95, 177, 321, 324, 396
Sau3AI	GATC	2 cut(s)	150, 447
ScaI	AGTACT	1 cut(s)	22
SetI	ASST	8 cut(s)	79, 99, 142, 261, 340, 346, 427, 437
SfaNI	GCATC	2 cut(s)	40, 298
Sse9I	AATT	2 cut(s)	116, 212
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	169
TasI	AATT	2 cut(s)	116, 212
TatI	WGTACW	1 cut(s)	20
TseI	GCWGC	5 cut(s)	94, 176, 320, 323, 395
TspDTI	ATGAA	1 cut(s)	417
XceI	RCATGY	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.