Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Reverse (-)

31872539 .. 31876303

Gene Structure 3765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1241800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCCTCCGACAGACGCAAGTACGACGATAGATTGACAAGGGAGGAACCAACCCGCGACCAGACACCCATCACCGTTGAAGCAAATCTCAACGAGGAGAGAGATTTCCGTACTCTCTCTCTCTCTCTAGACTCTAGACTCTCTCTCTCTATACAGAGACCGAGAAATTCCTGGAATTTGATTCAATTCTTCGACAACATGAGTTTGACCCAGTTCGCCATGGTTGAGGAATTGGCTTCTCTTGTCAAAGACAATCTTACGTGCAAGCATCTTATTCTCTCAGTGGAAGAGTCCTTGGTGGACTTCCTTCAGAGTGATACCAGGCATATTCTTGTTGTTTTGATTTCCAGTGGGGTCTTGGAGTTGGAACCAATGAACTCATACAACCGTCTTCTGTTGCATCGTCTTGCAGATATATTTGGGTTTTCCCATGAATCTGTTGGTGAAGGAGAGGACCGGCACTTAATTTTGGAGCGCTGCCCAGAGACATCAATACCTTCTATCCTTGTTGGTGATATTTTGTGGCAGTATGATGAGCCCAGTTCTCCAACAACTTCACACCTGTTATTAAAGAGGACCAAAAGCCCCCCAGTGTTGAGAACAAAACCACCTTTACTCCAACATTCACTTGAGGAGAGAGAAGCAGCTTATTTGGCTGCTCGAGAGCGAATATTTTCAAGAGACTTGGGCGAGGTAAACGAATCTGTCAGGCAGAAGCCACGTAGTGATCCTGTTGTTGCCCGCCGGATGATAGCGCATGCACTAGGCCAGAGAATCAGTCCATCCAGTCAGGGTTCTCCTCACGAGGATTGCAAAGCTTCTGGAGGGCAGACTGATGAATTACGTGTTCAAGGCAATGTTGTAGATGAGGCTGATTTGACCGCAGAATCTTTTCAGCATACAGTCTCCCTTTCGAACAGAGATATGAACTCACGTGGTGAAGTGAAAAACAACCACCGTAGTAATAGTGGCCCAGCTCTTACCCGAAGTGAAAGGAAGACATCCCAGAAACAAGGTGACAATAATGGAAGAAGTGGACATGGTGTAGATGAGGAATACATCAAAAGGGAGCAGGTGGGAGCAGCAAAGAGGATGTTTGCTAATGCATTGGGAATGCGTTCAGGGAAGAATGGTTCTCTCTCGAAATGCAGCGAGATAAAGCATGATAGCACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

393

Amino Acids

44.15

Weight (kDa)

6.15

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	93 - 158	1.2e-12	R3H domain
SUZ	PF12752	195 - 227	4.4e-08	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1063
Acc36I	ACCTGC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	55, 742, 882
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	2 cut(s)	166, 175
AcuI	CTGAAG	1 cut(s)	293
AcvI	CACGTG	1 cut(s)	935
AdeI	CACNNNGTG	2 cut(s)	725, 938
AfaI	GTAC	2 cut(s)	23, 112
AfeI	AGCGCT	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	4 cut(s)	80, 185, 678, 851
AjnI	CCWGG	2 cut(s)	170, 320
AloI	GAACNNNNNNTCC	2 cut(s)	1117, 1149
AluBI	AGCT	3 cut(s)	647, 818, 977
AluI	AGCT	3 cut(s)	647, 818, 977
Alw26I	GTCTC	4 cut(s)	151, 479, 675, 910
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	660
Aor51HI	AGCGCT	1 cut(s)	476
AoxI	GGCC	2 cut(s)	766, 970
ApeKI	GCWGC	5 cut(s)	477, 644, 656, 1082, 1149
ApoI	RAATTY	2 cut(s)	166, 175
Asp700I	GAANNNNTTC	3 cut(s)	673, 891, 1117
AspLEI	GCGC	2 cut(s)	477, 757
AspS9I	GGNCC	3 cut(s)	454, 576, 971
AsuHPI	GGTGA	5 cut(s)	64, 455, 524, 950, 1028
AsuII	TTCGAA	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	2 cut(s)	454, 576
BanII	GRGCYC	1 cut(s)	540
BauI	CACGAG	1 cut(s)	803
BbrPI	CACGTG	1 cut(s)	935
BbsI	GAAGAC	2 cut(s)	383, 1004
BbvI	GCAGC	5 cut(s)	464, 643, 656, 1094, 1161
BccI	CCATC	2 cut(s)	77, 790
BciT130I	CCWGG	2 cut(s)	172, 322
BcoDI	GTCTC	4 cut(s)	151, 479, 675, 910
BfaI	CTAG	3 cut(s)	128, 135, 764
BfoI	RGCGCY	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	1063
BisI	GCNGC	5 cut(s)	478, 645, 657, 1083, 1150
BlsI	GCNGC	5 cut(s)	479, 646, 658, 1084, 1151
Bme1390I	CCNGG	2 cut(s)	172, 322
Bme18I	GGWCC	2 cut(s)	454, 576
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	454, 576, 971
BmiI	GGNNCC	2 cut(s)	48, 369
BmrFI	CCNGG	2 cut(s)	172, 322
BmrI	ACTGGG	3 cut(s)	205, 534, 584
BmsI	GCATC	2 cut(s)	277, 409
BmuI	ACTGGG	3 cut(s)	205, 534, 584
BpiI	GAAGAC	2 cut(s)	383, 1004
BpmI	CTGGAG	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	650
BsaAI	YACGTR	4 cut(s)	261, 722, 845, 935
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	219, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	5 cut(s)	211, 348, 540, 590, 786
Bse3DI	GCAATG	1 cut(s)	862
BseBI	CCWGG	2 cut(s)	172, 322
BseDI	CCNNGG	2 cut(s)	219, 294
BseGI	GGATG	4 cut(s)	753, 782, 1001, 1098
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	5 cut(s)	211, 348, 540, 590, 786
BseRI	GAGGAG	3 cut(s)	110, 647, 789
BseXI	GCAGC	5 cut(s)	464, 643, 656, 1094, 1161
BseYI	CCCAGC	1 cut(s)	973
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	768, 972
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	457, 745
BsmAI	GTCTC	4 cut(s)	151, 479, 675, 910
BsmI	GAATGC	1 cut(s)	1119
BsnI	GGCC	2 cut(s)	768, 972
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	660
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	727
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	55, 742, 882
BspANI	GGCC	2 cut(s)	768, 972
BspCNI	CTCAG	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	48, 369
BspMI	ACCTGC	1 cut(s)	1063
BspPI	GGATC	1 cut(s)	722
BspT104I	TTCGAA	1 cut(s)	914
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	5 cut(s)	211, 348, 540, 590, 786
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	219, 294
BssMI	GATC	1 cut(s)	727
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	219, 294
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	2 cut(s)	172, 322
Bst4CI	ACNGT	4 cut(s)	76, 389, 904, 959
Bst6I	CTCTTC	1 cut(s)	282
BstBAI	YACGTR	4 cut(s)	261, 722, 845, 935
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	266, 742, 759
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	4 cut(s)	753, 782, 1001, 1098
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	477, 757
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	4 cut(s)	151, 479, 675, 910
BstMBI	GATC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	2 cut(s)	172, 322
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	170, 320
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	5 cut(s)	464, 643, 656, 1094, 1161
BstV2I	GAAGAC	2 cut(s)	383, 1004
BsuRI	GGCC	2 cut(s)	768, 972
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	753, 782, 1001, 1098
BtsIMutI	CAGTG	3 cut(s)	288, 355, 597
BveI	ACCTGC	1 cut(s)	1063
Cac8I	GCNNGC	3 cut(s)	266, 742, 759
CfoI	GCGC	2 cut(s)	477, 757
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	454, 576, 971
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	22, 111
CviAII	CATG	6 cut(s)	199, 220, 431, 758, 1040, 1163
CviQI	GTAC	2 cut(s)	22, 111
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
DraIII	CACNNNGTG	2 cut(s)	725, 938
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	219, 294
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	454, 576
Eco47III	AGCGCT	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	293
Eco72I	CACGTG	1 cut(s)	935
Eco88I	CYCGRG	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	170, 320
EcoT14I	CCWWGG	2 cut(s)	219, 294
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	2 cut(s)	219, 294
FaeI	CATG	6 cut(s)	202, 223, 434, 761, 1043, 1166
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	6 cut(s)	198, 219, 430, 757, 1039, 1162
FauI	CCCGC	2 cut(s)	62, 749
Fnu4HI	GCNGC	5 cut(s)	478, 645, 657, 1083, 1150
FokI	GGATG	4 cut(s)	760, 769, 988, 1105
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	5 cut(s)	478, 645, 657, 1083, 1150
FspBI	CTAG	3 cut(s)	128, 135, 764
GlaI	GCGC	2 cut(s)	476, 756
GluI	GCNGC	5 cut(s)	478, 645, 657, 1083, 1150
GsaI	CCCAGC	1 cut(s)	977
GsuI	CTGGAG	1 cut(s)	843
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	2 cut(s)	768, 972
HapII	CCGG	2 cut(s)	457, 745
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	477, 757
Hin1II	CATG	6 cut(s)	202, 223, 434, 761, 1043, 1166
Hin6I	GCGC	2 cut(s)	475, 755
HinP1I	GCGC	2 cut(s)	475, 755
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	8 cut(s)	131, 138, 181, 290, 434, 701, 774, 887
HpaII	CCGG	2 cut(s)	457, 745
HphI	GGTGA	5 cut(s)	64, 455, 524, 950, 1028
Hpy166II	GTNNAC	3 cut(s)	301, 697, 1037
Hpy188I	TCNGA	2 cut(s)	10, 312
Hpy188III	TCNNGA	7 cut(s)	128, 135, 662, 678, 803, 822, 1141
Hpy8I	GTNNAC	3 cut(s)	301, 697, 1037
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	317, 440, 507
HpyCH4III	ACNGT	4 cut(s)	76, 389, 904, 959
HpyCH4IV	ACGT	4 cut(s)	260, 721, 844, 934
HpyCH4V	TGCA	7 cut(s)	264, 400, 410, 761, 813, 1106, 1149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	4 cut(s)	260, 721, 844, 934
Hsp92II	CATG	6 cut(s)	202, 223, 434, 761, 1043, 1166
HspAI	GCGC	2 cut(s)	475, 755
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	472, 1069, 1079
Lsp1109I	GCAGC	5 cut(s)	464, 643, 656, 1094, 1161
LweI	GCATC	2 cut(s)	277, 409
MaeI	CTAG	3 cut(s)	128, 135, 764
MaeII	ACGT	4 cut(s)	260, 721, 844, 934
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	6 cut(s)	181, 299, 383, 1009, 1041, 1138
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	6 cut(s)	166, 175, 185, 230, 465, 839
MlyI	GAGTC	3 cut(s)	125, 132, 299
MmeI	TCCRAC	4 cut(s)	33, 345, 572, 643
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	3 cut(s)	673, 891, 1117
MseI	TTAA	2 cut(s)	464, 569
MspI	CCGG	2 cut(s)	457, 745
MspR9I	CCNGG	2 cut(s)	172, 322
Mva1269I	GAATGC	1 cut(s)	1119
MvaI	CCWGG	2 cut(s)	172, 322
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	6 cut(s)	202, 223, 434, 761, 1043, 1166
NlaIV	GGNNCC	2 cut(s)	48, 369
NmuCI	GTSAC	1 cut(s)	1016
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	914
PaeI	GCATGC	1 cut(s)	761
PaeR7I	CTCGAG	1 cut(s)	660
PaqCI	CACCTGC	1 cut(s)	1063
PctI	GAATGC	1 cut(s)	1119
PdmI	GAANNNNTTC	3 cut(s)	673, 891, 1117
PfeI	GAWTC	5 cut(s)	181, 434, 701, 774, 887
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	479, 646, 658, 1084, 1151
PleI	GAGTC	3 cut(s)	125, 132, 298
PmaCI	CACGTG	1 cut(s)	935
PmlI	CACGTG	1 cut(s)	935
PpsI	GAGTC	3 cut(s)	125, 132, 298
Ppu21I	YACGTR	4 cut(s)	261, 722, 845, 935
Psp6I	CCWGG	2 cut(s)	170, 320
PspCI	CACGTG	1 cut(s)	935
PspFI	CCCAGC	1 cut(s)	973
PspGI	CCWGG	2 cut(s)	170, 320
PspN4I	GGNNCC	2 cut(s)	48, 369
PspPI	GGNCC	3 cut(s)	454, 576, 971
RsaI	GTAC	2 cut(s)	23, 112
RsaNI	GTAC	2 cut(s)	22, 111
SaqAI	TTAA	2 cut(s)	464, 569
SatI	GCNGC	5 cut(s)	478, 645, 657, 1083, 1150
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	3 cut(s)	454, 576, 971
SchI	GAGTC	3 cut(s)	125, 132, 299
ScrFI	CCNGG	2 cut(s)	172, 322
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	2 cut(s)	277, 409
Sfr274I	CTCGAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	2 cut(s)	454, 576
SlaI	CTCGAG	1 cut(s)	660
SmlI	CTYRAG	2 cut(s)	629, 660
SmoI	CTYRAG	2 cut(s)	629, 660
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	6 cut(s)	166, 175, 185, 230, 465, 839
SsiI	CCGC	3 cut(s)	55, 742, 882
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	3 cut(s)	128, 135, 764
StyD4I	CCNGG	2 cut(s)	170, 320
StyI	CCWWGG	2 cut(s)	219, 294
TaaI	ACNGT	4 cut(s)	76, 389, 904, 959
TaiI	ACGT	4 cut(s)	263, 724, 847, 937
TaqI	TCGA	4 cut(s)	192, 661, 914, 1142
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	6 cut(s)	166, 175, 185, 230, 465, 839
TfiI	GAWTC	5 cut(s)	181, 434, 701, 774, 887
Tru1I	TTAA	2 cut(s)	464, 569
Tru9I	TTAA	2 cut(s)	464, 569
TscAI	CASTG	3 cut(s)	288, 355, 597
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	5 cut(s)	477, 644, 656, 1082, 1149
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	4 cut(s)	389, 447, 852, 941
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	3 cut(s)	288, 355, 597
VpaK11BI	GGWCC	2 cut(s)	454, 576
XapI	RAATTY	2 cut(s)	166, 175
XbaI	TCTAGA	2 cut(s)	127, 134
XceI	RCATGY	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 437
XhoI	CTCGAG	1 cut(s)	660
XmnI	GAANNNNTTC	3 cut(s)	673, 891, 1117
XspI	CTAG	3 cut(s)	128, 135, 764
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.