Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Reverse (-)

46505 .. 48056

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCTGTTGGTGAAGGAGAGGAGCGGCATTTAGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTGTTATTAAAGAGGTCAGAAGCCCCTCCAGTGTTGAGGAAAAAATCTCCTCCGCTTCAACATTCACTAGAGGAGAGAGAAGCAGCATATTTGGCAGCTCGTGAGCGAATATTTTCGGGGGATTTGGGAGAAGTAAAGGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCTAGAGGGCTGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGGAAAAGTTGTTAAGAGCGTTAAACCGGCGGGAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

179

Amino Acids

19.87

Weight (kDa)

8.46

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	1 - 34	1e-08	R3H domain
SUZ	PF12752	75 - 104	4e-09	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	3 cut(s)	85, 242, 524
AgsI	TTSAA	3 cut(s)	248, 472, 491
AluBI	AGCT	2 cut(s)	287, 533
AluI	AGCT	2 cut(s)	287, 533
Alw26I	GTCTC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	272, 284
Asp700I	GAANNNNTTC	1 cut(s)	301
AspA2I	CCTAGG	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	83
AvrII	CCTAGG	1 cut(s)	391
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	284, 296
BccI	CCATC	2 cut(s)	137, 418
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	257, 392, 450
BisI	GCNGC	3 cut(s)	86, 273, 285
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	3 cut(s)	87, 274, 286
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	37, 95, 412, 455
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	2 cut(s)	218, 414
Bse3DI	GCAATG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	4 cut(s)	129, 381, 410, 427
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	353, 449
BseNI	ACTGG	2 cut(s)	218, 414
BseRI	GAGGAG	3 cut(s)	95, 228, 275
BseXI	GCAGC	2 cut(s)	284, 296
BsiSI	CCGG	2 cut(s)	110, 521
BsmAI	GTCTC	1 cut(s)	107
BspACI	CCGC	3 cut(s)	85, 242, 524
BspCNI	CTCAG	2 cut(s)	352, 450
BspHI	TCATGA	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	218, 414
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	17, 126
BstDEI	CTNAG	2 cut(s)	339, 458
BstF5I	GGATG	4 cut(s)	129, 381, 410, 427
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 530
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	284, 296
BstV2I	GAAGAC	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	4 cut(s)	129, 381, 410, 427
BtsIMutI	CAGTG	2 cut(s)	145, 225
CciI	TCATGA	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	520
CviAII	CATG	3 cut(s)	59, 386, 431
CviJI	RGCY	5 cut(s)	166, 212, 287, 457, 533
CviKI_1	RGCY	5 cut(s)	166, 212, 287, 457, 533
DdeI	CTNAG	2 cut(s)	339, 458
Eco130I	CCWWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	62, 389, 434
FaiI	YATR	7 cut(s)	10, 44, 60, 159, 277, 387, 432
FatI	CATG	3 cut(s)	58, 385, 430
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	86, 273, 285
FokI	GGATG	4 cut(s)	116, 388, 397, 434
Fsp4HI	GCNGC	3 cut(s)	86, 273, 285
FspBI	CTAG	3 cut(s)	257, 392, 450
GluI	GCNGC	3 cut(s)	86, 273, 285
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	2 cut(s)	110, 521
Hin1II	CATG	3 cut(s)	62, 389, 434
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	4 cut(s)	62, 170, 329, 402
HpaII	CCGG	2 cut(s)	110, 521
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	208, 342, 375
Hpy188III	TCNNGA	4 cut(s)	290, 419, 431, 450
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	17, 126
HpyCH4V	TGCA	3 cut(s)	28, 38, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 530
HpyF3I	CTNAG	2 cut(s)	339, 458
Hsp92II	CATG	3 cut(s)	62, 389, 434
LmnI	GCTCC	2 cut(s)	82, 100
LpnPI	CCDG	6 cut(s)	123, 180, 231, 372, 404, 427
Lsp1109I	GCAGC	2 cut(s)	284, 296
LweI	GCATC	4 cut(s)	37, 95, 412, 455
MaeI	CTAG	3 cut(s)	257, 392, 450
MaeIII	GTNAC	1 cut(s)	334
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	11
MluCI	AATT	1 cut(s)	472
MmeI	TCCRAC	2 cut(s)	353, 475
MnlI	CCTC	9 cut(s)	73, 195, 219, 225, 249, 253, 336, 427, 446
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	3 cut(s)	197, 507, 516
MspI	CCGG	2 cut(s)	110, 521
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	281, 530
NciI	CCSGG	1 cut(s)	110
NlaIII	CATG	3 cut(s)	62, 389, 434
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	389
PagI	TCATGA	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	62, 170, 329, 402
PkrI	GCNGC	3 cut(s)	87, 274, 286
SaqAI	TTAA	3 cut(s)	197, 507, 516
SatI	GCNGC	3 cut(s)	86, 273, 285
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	4 cut(s)	206, 289, 489, 535
SfaNI	GCATC	4 cut(s)	37, 95, 412, 455
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	3 cut(s)	85, 242, 524
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	3 cut(s)	257, 392, 450
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	17, 126
TasI	AATT	1 cut(s)	472
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	62, 170, 329, 402
Tru1I	TTAA	3 cut(s)	197, 507, 516
Tru9I	TTAA	3 cut(s)	197, 507, 516
TscAI	CASTG	2 cut(s)	145, 225
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	272, 284
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	17, 75
TspRI	CASTG	2 cut(s)	145, 225
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	3 cut(s)	257, 392, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.