Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Reverse (-)

49328324 .. 49331423

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025938

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACCCAGTTCGCTATGGTTGAGGAGTTGGCTTCTCTTGTCAAGGACAATCTTTCGTGCAAGCATCTTATTCTCTCGGTCGAAGAGGCTTTGGTGGACTTCCTTCAGAGTGATACCAGTTCCAGTGGAGTCTTGCAGTTGGAACCAATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCCGTTGGTGAAGGAGAGGAGCGGCATTTGGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTATTATTAAAGAGGTCAGAAGCCCCTCCAGTGTTAAGGAAAAAATCTCCTCCGCTTCAACATTCACTAGAGGAGAGAGAAGCAGCATATTTGGCAGCTCGTGAGCGAATATTTTCGAGAGATTTGGGAGAAGTAAAAGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCTAGAGGGCTGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGAGACCAATTTGACTGTGGAAGCTTGTCAGCAGACCCTCACCCCTTTGGACCAAAATGTGAACTCCTGTGGTGAAGTGAAAAAGAACAACCGTAGTTTGAATGCATCACCCCTAAGTCTAAGTGAAAGGAAGACATCCCAAAAACAAGATGACAAGATTTCTGGTGCTGTCAGCAGCATATCTCAAAACGGAAGAAAAGGACATGGTGCAGACGAGGAAGACATCAAAAGGGAACATTTGGGTGCAGCAAAGAGGATGTTTGCTCATGCCCTAGGAATGCGCTCAGGGAAGAATGGTGTTTCATCAAAAGGCAGTGAGATAAAGCATGTTAACATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

328

Amino Acids

36.25

Weight (kDa)

6.33

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	24 - 83	2.3e-14	R3H domain
SUZ	PF12752	125 - 152	1.8e-08	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	232, 389
AcuI	CTGAAG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	395, 619, 638, 742
AluBI	AGCT	2 cut(s)	434, 665
AluI	AGCT	2 cut(s)	434, 665
Alw26I	GTCTC	2 cut(s)	254, 638
ApeKI	GCWGC	4 cut(s)	419, 431, 816, 887
Asp700I	GAANNNNTTC	1 cut(s)	448
AspA2I	CCTAGG	2 cut(s)	538, 913
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	230, 673, 725, 741
AvaII	GGWCC	1 cut(s)	691
AvrII	CCTAGG	2 cut(s)	538, 913
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	3 cut(s)	158, 779, 867
BbvI	GCAGC	4 cut(s)	431, 443, 828, 899
BccI	CCATC	2 cut(s)	284, 565
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	254, 638
BfaI	CTAG	4 cut(s)	404, 539, 597, 914
BisI	GCNGC	5 cut(s)	233, 420, 432, 817, 888
BlnI	CCTAGG	2 cut(s)	538, 913
BlsI	GCNGC	5 cut(s)	234, 421, 433, 818, 889
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	6 cut(s)	73, 184, 242, 559, 602, 755
BpiI	GAAGAC	3 cut(s)	158, 779, 867
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	925
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	538, 913
Bse1I	ACTGG	5 cut(s)	7, 117, 123, 365, 561
Bse3DI	GCAATG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	538, 913
BseGI	GGATG	6 cut(s)	276, 528, 557, 574, 776, 903
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	500, 596, 939
BseNI	ACTGG	5 cut(s)	7, 117, 123, 365, 561
BseRI	GAGGAG	4 cut(s)	38, 242, 375, 422
BseXI	GCAGC	4 cut(s)	431, 443, 828, 899
BsgI	GTGCAG	2 cut(s)	870, 906
Bsh1285I	CGRYCG	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	254, 638
BsmI	GAATGC	2 cut(s)	748, 924
Bso31I	GGTCTC	1 cut(s)	638
BspACI	CCGC	2 cut(s)	232, 389
BspCNI	CTCAG	3 cut(s)	499, 597, 938
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	638
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	5 cut(s)	7, 117, 123, 365, 561
BssECI	CCNNGG	2 cut(s)	538, 913
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	538, 913
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	4 cut(s)	164, 273, 658, 734
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	486, 605, 755, 761, 925
BstF5I	GGATG	6 cut(s)	276, 528, 557, 574, 776, 903
BstHHI	GCGC	1 cut(s)	924
BstMAI	GTCTC	2 cut(s)	254, 638
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	536, 971
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	4 cut(s)	431, 443, 828, 899
BstV2I	GAAGAC	3 cut(s)	158, 779, 867
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	6 cut(s)	276, 528, 557, 574, 776, 903
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	4 cut(s)	130, 292, 372, 961
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	1 cut(s)	691
CviAII	CATG	7 cut(s)	206, 533, 578, 845, 908, 968, 976
CviJI	RGCY	7 cut(s)	32, 89, 313, 359, 434, 604, 665
CviKI_1	RGCY	7 cut(s)	32, 89, 313, 359, 434, 604, 665
DdeI	CTNAG	5 cut(s)	486, 605, 755, 761, 925
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	538, 913
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	538, 913
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	538, 913
FaeI	CATG	7 cut(s)	209, 536, 581, 848, 911, 971, 979
FatI	CATG	7 cut(s)	205, 532, 577, 844, 907, 967, 975
Fnu4HI	GCNGC	5 cut(s)	233, 420, 432, 817, 888
FokI	GGATG	6 cut(s)	263, 535, 544, 581, 763, 910
Fsp4HI	GCNGC	5 cut(s)	233, 420, 432, 817, 888
FspBI	CTAG	4 cut(s)	404, 539, 597, 914
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	5 cut(s)	233, 420, 432, 817, 888
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	924
Hin1II	CATG	7 cut(s)	209, 536, 581, 848, 911, 971, 979
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	5 cut(s)	129, 209, 317, 476, 549
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	4 cut(s)	230, 673, 725, 741
Hpy166II	GTNNAC	3 cut(s)	97, 703, 973
Hpy188I	TCNGA	4 cut(s)	108, 355, 489, 522
Hpy188III	TCNNGA	5 cut(s)	437, 453, 566, 578, 597
Hpy8I	GTNNAC	3 cut(s)	97, 703, 973
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	113, 215
HpyCH4III	ACNGT	4 cut(s)	164, 273, 658, 734
HpyCH4V	TGCA	8 cut(s)	60, 136, 175, 185, 588, 746, 851, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	5 cut(s)	486, 605, 755, 761, 925
Hsp92II	CATG	7 cut(s)	209, 536, 581, 848, 911, 971, 979
HspAI	GCGC	1 cut(s)	922
KspAI	GTTAAC	1 cut(s)	973
LmnI	GCTCC	2 cut(s)	229, 247
Lsp1109I	GCAGC	4 cut(s)	431, 443, 828, 899
LweI	GCATC	6 cut(s)	73, 184, 242, 559, 602, 755
MaeI	CTAG	4 cut(s)	404, 539, 597, 914
MaeIII	GTNAC	1 cut(s)	481
MbiI	CCGCTC	1 cut(s)	232
MboII	GAAGA	6 cut(s)	95, 158, 784, 846, 872, 943
MluCI	AATT	2 cut(s)	619, 649
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	120, 500
Mph1103I	ATGCAT	1 cut(s)	748
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	3 cut(s)	344, 371, 972
MslI	CAYNNNNRTG	1 cut(s)	882
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	748, 924
MwoI	GCNNNNNNNGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	257
NlaIII	CATG	7 cut(s)	209, 536, 581, 848, 911, 971, 979
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	2 cut(s)	536, 971
PagI	TCATGA	1 cut(s)	577
PctI	GAATGC	2 cut(s)	748, 924
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	4 cut(s)	209, 317, 476, 549
PkrI	GCNGC	5 cut(s)	234, 421, 433, 818, 889
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	882
SaqAI	TTAA	3 cut(s)	344, 371, 972
SatI	GCNGC	5 cut(s)	233, 420, 432, 817, 888
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	4 cut(s)	353, 436, 636, 667
SfaNI	GCATC	6 cut(s)	73, 184, 242, 559, 602, 755
SinI	GGWCC	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	882
Sse9I	AATT	2 cut(s)	619, 649
SsiI	CCGC	2 cut(s)	232, 389
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	4 cut(s)	404, 539, 597, 914
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	538, 913
TaaI	ACNGT	4 cut(s)	164, 273, 658, 734
TaqI	TCGA	2 cut(s)	81, 452
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	619, 649
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	4 cut(s)	209, 317, 476, 549
Tru1I	TTAA	3 cut(s)	344, 371, 972
Tru9I	TTAA	3 cut(s)	344, 371, 972
TscAI	CASTG	4 cut(s)	130, 292, 372, 961
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	4 cut(s)	419, 431, 816, 887
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	164, 222, 933
TspGWI	ACGGA	2 cut(s)	202, 846
TspRI	CASTG	4 cut(s)	130, 292, 372, 961
VpaK11BI	GGWCC	1 cut(s)	691
XbaI	TCTAGA	1 cut(s)	596
XceI	RCATGY	2 cut(s)	536, 971
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 655
XmaJI	CCTAGG	2 cut(s)	538, 913
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	4 cut(s)	404, 539, 597, 914
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.