Rw3G000700

SUZ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006548
Physical Location & Seq
Forward (+)
554708 .. 557966
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000700.1

Sequence Viewer

Length: 948 bp
ATGAGTATGACCCAGTTCGCTATGGTTGAGGAATTGGCTTCTCTTGTCAAGGACAATCTTTCGTGCAAGCATCTTATTCTCTCAGTGGAAGAGGCTTTGGTGGATTTCCTTCAGAGTGATACCAGTTCCAGTGGAGTCTTGCAGTTGGAACCAATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCTGTTGGTGAAGGAGAGGAGCGGCATTTAGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTATTATTAAAGAGGTCAGAAGCCCCTCCAGGAGAGAGAAGCAGCATATTGGCAGCTCGTGAGCGAATATTTTCGAGGGATTTGGGAGAAGTAAAGGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCTAGAGGGCCGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGAGACTAATTTGATTGTGGAAGCTTGTCATCAGACCCTCACCCCTTTGGACCAAAATGTGAACTCCTGTGGTGAAGTGAAAAAGAACAACCGTAGTTTGAATGCATCACCCCCAAGTCTAAGTGAAAGGAAGACATCCCAAAAACAAGATGACAAGATTTCTGGTGCTGTCAGCAGCGTATCTCAAAACGGAAGAAAAGGACATGGTGCAGATGAGGAAGACATCAAAAGGGAACATTTGGGTGCAGCAAAGAGGATGTTTGCTCATGCCCTAGGAATGCGCTCAGGGAAGAATGGTGTTTCATCAAAAGGCAGCGAGATAAAGCATGTTAACATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

315

Amino Acids

34.74

Weight (kDa)

6.2

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 26 - 85 2.2e-14 R3H domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 583, 602, 706
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 398, 629
AluI AGCT 2 cut(s) 398, 629
Alw26I GTCTC 2 cut(s) 260, 602
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 5 cut(s) 384, 395, 780, 851, 918
Asp700I GAANNNNTTC 1 cut(s) 412
AspA2I CCTAGG 2 cut(s) 502, 877
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 566, 655
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 4 cut(s) 236, 637, 689, 705
AvaII GGWCC 1 cut(s) 655
AvrII CCTAGG 2 cut(s) 502, 877
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 3 cut(s) 164, 743, 831
BbvI GCAGC 5 cut(s) 396, 407, 792, 863, 930
BccI CCATC 2 cut(s) 290, 529
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 260, 602
BfaI CTAG 3 cut(s) 503, 561, 878
BisI GCNGC 6 cut(s) 239, 385, 396, 781, 852, 919
BlnI CCTAGG 2 cut(s) 502, 877
BlsI GCNGC 6 cut(s) 240, 386, 397, 782, 853, 920
Bme1390I CCNGG 2 cut(s) 263, 372
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 2 cut(s) 566, 655
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 263, 372
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 6 cut(s) 79, 190, 248, 523, 566, 719
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 3 cut(s) 164, 743, 831
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 502, 877
Bse1I ACTGG 4 cut(s) 13, 123, 129, 525
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 502, 877
BseGI GGATG 6 cut(s) 282, 492, 521, 538, 740, 867
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 3 cut(s) 96, 464, 903
BseNI ACTGG 4 cut(s) 13, 123, 129, 525
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 5 cut(s) 396, 407, 792, 863, 930
BsgI GTGCAG 2 cut(s) 834, 870
BshFI GGCC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 260, 602
BsmI GAATGC 2 cut(s) 712, 888
BsnI GGCC 1 cut(s) 568
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 3 cut(s) 95, 463, 902
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 4 cut(s) 13, 123, 129, 525
BssECI CCNNGG 2 cut(s) 502, 877
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 2 cut(s) 502, 877
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 170, 279, 698
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 82, 450, 725, 889
BstF5I GGATG 6 cut(s) 282, 492, 521, 538, 740, 867
BstHHI GCGC 1 cut(s) 888
BstMAI GTCTC 2 cut(s) 260, 602
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 500, 935
BstSCI CCNGG 2 cut(s) 261, 370
BstV1I GCAGC 5 cut(s) 396, 407, 792, 863, 930
BstV2I GAAGAC 3 cut(s) 164, 743, 831
BsuRI GGCC 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 6 cut(s) 282, 492, 521, 538, 740, 867
BtsIMutI CAGTG 3 cut(s) 90, 136, 298
Cac8I GCNNGC 1 cut(s) 68
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 888
Cfr13I GGNCC 2 cut(s) 566, 655
CviAII CATG 7 cut(s) 212, 497, 542, 809, 872, 932, 940
CviJI RGCY 7 cut(s) 38, 95, 319, 365, 398, 568, 629
CviKI_1 RGCY 7 cut(s) 38, 95, 319, 365, 398, 568, 629
DdeI CTNAG 4 cut(s) 82, 450, 725, 889
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 502, 877
Eco47I GGWCC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 502, 877
EcoT22I ATGCAT 1 cut(s) 712
ErhI CCWWGG 2 cut(s) 502, 877
FaeI CATG 7 cut(s) 215, 500, 545, 812, 875, 935, 943
FatI CATG 7 cut(s) 211, 496, 541, 808, 871, 931, 939
Fnu4HI GCNGC 6 cut(s) 239, 385, 396, 781, 852, 919
FokI GGATG 6 cut(s) 269, 499, 508, 545, 727, 874
Fsp4HI GCNGC 6 cut(s) 239, 385, 396, 781, 852, 919
FspBI CTAG 3 cut(s) 503, 561, 878
GlaI GCGC 1 cut(s) 887
GluI GCNGC 6 cut(s) 239, 385, 396, 781, 852, 919
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 568
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 888
Hin1II CATG 7 cut(s) 215, 500, 545, 812, 875, 935, 943
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 5 cut(s) 135, 215, 323, 440, 513
HpaI GTTAAC 1 cut(s) 937
HpaII CCGG 1 cut(s) 263
HphI GGTGA 4 cut(s) 236, 637, 689, 705
Hpy166II GTNNAC 2 cut(s) 667, 937
Hpy188I TCNGA 5 cut(s) 114, 361, 453, 486, 639
Hpy188III TCNNGA 4 cut(s) 401, 530, 542, 561
Hpy8I GTNNAC 2 cut(s) 667, 937
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 2 cut(s) 119, 221
HpyCH4III ACNGT 3 cut(s) 170, 279, 698
HpyCH4V TGCA 8 cut(s) 66, 142, 181, 191, 552, 710, 815, 851
HpyF3I CTNAG 4 cut(s) 82, 450, 725, 889
Hsp92II CATG 7 cut(s) 215, 500, 545, 812, 875, 935, 943
HspAI GCGC 1 cut(s) 886
KspAI GTTAAC 1 cut(s) 937
LmnI GCTCC 2 cut(s) 235, 253
Lsp1109I GCAGC 5 cut(s) 396, 407, 792, 863, 930
LweI GCATC 6 cut(s) 79, 190, 248, 523, 566, 719
MaeI CTAG 3 cut(s) 503, 561, 878
MaeIII GTNAC 1 cut(s) 445
MbiI CCGCTC 1 cut(s) 238
MboII GAAGA 6 cut(s) 101, 164, 748, 810, 836, 907
MluCI AATT 3 cut(s) 32, 583, 613
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 2 cut(s) 126, 464
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 2 cut(s) 350, 936
MslI CAYNNNNRTG 1 cut(s) 846
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 263, 372
Mva1269I GAATGC 2 cut(s) 712, 888
MvaI CCWGG 1 cut(s) 372
NciI CCSGG 1 cut(s) 263
NlaIII CATG 7 cut(s) 215, 500, 545, 812, 875, 935, 943
NlaIV GGNNCC 1 cut(s) 150
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 2 cut(s) 500, 935
PagI TCATGA 1 cut(s) 541
PctI GAATGC 2 cut(s) 712, 888
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 4 cut(s) 215, 323, 440, 513
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 6 cut(s) 240, 386, 397, 782, 853, 920
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 566, 655
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 2 cut(s) 350, 936
SatI GCNGC 6 cut(s) 239, 385, 396, 781, 852, 919
Sau96I GGNCC 2 cut(s) 566, 655
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 263, 372
SetI ASST 4 cut(s) 359, 400, 600, 631
SfaNI GCATC 6 cut(s) 79, 190, 248, 523, 566, 719
SinI GGWCC 1 cut(s) 655
SmiMI CAYNNNNRTG 1 cut(s) 846
Sse9I AATT 3 cut(s) 32, 583, 613
SsiI CCGC 1 cut(s) 238
SspI AATATT 1 cut(s) 411
SspMI CTAG 3 cut(s) 503, 561, 878
StyD4I CCNGG 2 cut(s) 261, 370
StyI CCWWGG 2 cut(s) 502, 877
TaaI ACNGT 3 cut(s) 170, 279, 698
TaqI TCGA 1 cut(s) 416
TasI AATT 3 cut(s) 32, 583, 613
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 4 cut(s) 215, 323, 440, 513
Tru1I TTAA 2 cut(s) 350, 936
Tru9I TTAA 2 cut(s) 350, 936
TscAI CASTG 3 cut(s) 90, 136, 298
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 5 cut(s) 384, 395, 780, 851, 918
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 3 cut(s) 170, 228, 897
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 3 cut(s) 90, 136, 298
VpaK11BI GGWCC 1 cut(s) 655
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 2 cut(s) 500, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XmaJI CCTAGG 2 cut(s) 502, 877
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 3 cut(s) 503, 561, 878
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.