Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Reverse (-)

24232104 .. 24234883

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTTTGACCCAGTTCGCCATGGTTGAGGAATTGGCTTCTCTTGTCAAAGACAATCTTACTTGCAAGCATCTTATTCTCTCAGTGGAAGAGGCCTTGGTGGACTTCCTTCAGAGTGATACCAGGCATTTCCAGTGGGGTCTTGGAGTTGGAACCAATGAGCTCGTACAACCGTCTTCTCTTGCATCGTTTTCCCATGAATCTGTTGGTGAAGGAGATGACCGCCACTTAATTTTGGAGCGATGCCCAGAGACTTCAATACCTTCAATCCTTGTTGGTGATATTTTGTGGCAGTATGATAAGCCTGATTCTCCAACGACTTCGCACCTATTATTAAAGAGGACAGAAAGCCGCCCAGCGTTGAGGAAAAAACCACCTTTGCTTCACCATTCACTTGAGGAGAGAGAAGCAGCTTATTTGGCTGCTCGCGAGCGAATATTTTCAAGCGACTTGGGCGAGGTGAAAGAATCTGTCAGGCAGAAGCCACGTAGTGACCCTGTTGTTGCCCGACGGATGATAGCACATGCCCTAGGCCAGAGAATCAATCCATCCAGTCAGGGTTCCCCTCATGAGGGTTGCAAAGCTTCTGGAGGGCAGACTGATGAATTAAATGTTCAAGGCAAGGTTGCTGATGAGGCTAATTTGACTGCAGAATCTTTTCAGCATACCATCTCCCTTTTGAACGGAGATATGAACTCGCGTGGTGAAGTGAAAAACAACCACCGTAGTAATAGTGGCTCACCTCTCACCGGAAGTGAAAAGAAGACATCCCAGAAACAAGGTGACAATAATGGAAGAAACGGACATGGTGTAGATGAGGAATACATCAAAAGGGAGCAGGTGGGAGCAGCAAAGAGGATGTTTGCTAATGCCTTGGGAGTGCGTTCAGGGAAGAATGGTTCTCTTTCGAAATGCAGCGAGGTAAAGCATGATAGCACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

315

Amino Acids

34.45

Weight (kDa)

6.37

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	829
AccII	CGCG	2 cut(s)	429, 700
AciI	CCGC	2 cut(s)	223, 352
AcuI	CTGAAG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	571, 572, 749
AgsI	TTSAA	5 cut(s)	258, 267, 444, 617, 682
AjnI	CCWGG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	883, 915
AluBI	AGCT	3 cut(s)	163, 413, 584
AluI	AGCT	3 cut(s)	163, 413, 584
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	93, 532
ApeKI	GCWGC	4 cut(s)	410, 422, 848, 915
Asp700I	GAANNNNTTC	2 cut(s)	439, 657
AspA2I	CCTAGG	1 cut(s)	529
AsuHPI	GGTGA	8 cut(s)	221, 290, 377, 472, 716, 732, 739, 794
AsuII	TTCGAA	1 cut(s)	908
AvrII	CCTAGG	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	168, 770
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	409, 422, 860, 927
BccI	CCATC	2 cut(s)	556, 677
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	5 cut(s)	352, 411, 423, 849, 916
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	5 cut(s)	353, 412, 424, 850, 917
Bme1390I	CCNGG	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	154, 562
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	7
BmsI	GCATC	3 cut(s)	79, 194, 233
BmuI	ACTGGG	1 cut(s)	7
BpiI	GAAGAC	2 cut(s)	168, 770
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	908
BpuEI	CTTGAG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	21, 96, 529, 873
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 572, 749
Bse1I	ACTGG	3 cut(s)	13, 133, 552
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	21, 96, 529, 873
BseGI	GGATG	4 cut(s)	519, 548, 767, 864
BseLI	CCNNNNNNNGG	3 cut(s)	571, 572, 749
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	13, 133, 552
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	409, 422, 860, 927
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	429, 700
BshFI	GGCC	2 cut(s)	95, 534
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	750
BslI	CCNNNNNNNGG	3 cut(s)	571, 572, 749
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	95, 534
Bsp119I	TTCGAA	1 cut(s)	908
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	2 cut(s)	223, 352
BspANI	GGCC	2 cut(s)	95, 534
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	2 cut(s)	429, 700
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	154, 562
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	829
BspT104I	TTCGAA	1 cut(s)	908
BsrI	ACTGG	3 cut(s)	13, 133, 552
BssECI	CCNNGG	4 cut(s)	21, 96, 529, 873
BssT1I	CCWWGG	4 cut(s)	21, 96, 529, 873
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	174, 725
Bst6I	CTCTTC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	908
BstC8I	GCNNGC	3 cut(s)	68, 427, 431
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	519, 548, 767, 864
BstFNI	CGCG	2 cut(s)	429, 700
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 453, 635
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	2 cut(s)	429, 700
BstV1I	GCAGC	4 cut(s)	409, 422, 860, 927
BstV2I	GAAGAC	2 cut(s)	168, 770
BsuRI	GGCC	2 cut(s)	95, 534
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	4 cut(s)	519, 548, 767, 864
BtsIMutI	CAGTG	2 cut(s)	90, 140
BtuMI	TCGCGA	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	68, 427, 431
CciI	TCATGA	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	6 cut(s)	22, 197, 524, 569, 806, 929
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	82
DraIII	CACNNNGTG	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	4 cut(s)	21, 96, 529, 873
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	4 cut(s)	21, 96, 529, 873
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	4 cut(s)	21, 96, 529, 873
FaeI	CATG	6 cut(s)	25, 200, 527, 572, 809, 932
FaiI	YATR	9 cut(s)	23, 198, 297, 525, 570, 666, 692, 807, 930
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	6 cut(s)	21, 196, 523, 568, 805, 928
Fnu4HI	GCNGC	5 cut(s)	352, 411, 423, 849, 916
FokI	GGATG	4 cut(s)	526, 535, 754, 871
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	5 cut(s)	352, 411, 423, 849, 916
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	5 cut(s)	352, 411, 423, 849, 916
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	95, 534
HapII	CCGG	1 cut(s)	750
Hin1II	CATG	6 cut(s)	25, 200, 527, 572, 809, 932
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	5 cut(s)	200, 308, 467, 540, 653
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	8 cut(s)	221, 290, 377, 472, 716, 732, 739, 794
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	428, 569, 588
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	3 cut(s)	119, 206, 273
HpyCH4III	ACNGT	2 cut(s)	174, 725
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	5 cut(s)	66, 185, 579, 650, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 453, 635
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	6 cut(s)	25, 200, 527, 572, 809, 932
LmnI	GCTCC	3 cut(s)	238, 835, 845
Lsp1109I	GCAGC	4 cut(s)	409, 422, 860, 927
LweI	GCATC	3 cut(s)	79, 194, 233
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	491, 782
MboII	GAAGA	5 cut(s)	101, 168, 775, 807, 904
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	32, 231, 605, 640
MmeI	TCCRAC	2 cut(s)	130, 338
MroXI	GAANNNNTTC	2 cut(s)	439, 657
MseI	TTAA	3 cut(s)	230, 335, 608
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	2 cut(s)	429, 700
MwoI	GCNNNNNNNGC	3 cut(s)	419, 453, 635
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	6 cut(s)	25, 200, 527, 572, 809, 932
NlaIV	GGNNCC	2 cut(s)	154, 562
NmuCI	GTSAC	2 cut(s)	491, 782
NruI	TCGCGA	1 cut(s)	429
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	908
PagI	TCATGA	1 cut(s)	568
PaqCI	CACCTGC	1 cut(s)	829
PceI	AGGCCT	1 cut(s)	95
PdmI	GAANNNNTTC	2 cut(s)	439, 657
PfeI	GAWTC	5 cut(s)	200, 308, 467, 540, 653
PkrI	GCNGC	5 cut(s)	353, 412, 424, 850, 917
Ppu21I	YACGTR	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	154, 562
PstI	CTGCAG	1 cut(s)	652
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	230, 335, 608
SatI	GCNGC	5 cut(s)	352, 411, 423, 849, 916
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	79, 194, 233
SfcI	CTRYAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	32, 231, 605, 640
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	223, 352
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	4 cut(s)	21, 96, 529, 873
TaaI	ACNGT	2 cut(s)	174, 725
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	908
TasI	AATT	4 cut(s)	32, 231, 605, 640
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	5 cut(s)	200, 308, 467, 540, 653
Tru1I	TTAA	3 cut(s)	230, 335, 608
Tru9I	TTAA	3 cut(s)	230, 335, 608
TscAI	CASTG	2 cut(s)	90, 140
TseFI	GTSAC	2 cut(s)	491, 782
TseI	GCWGC	4 cut(s)	410, 422, 848, 915
Tsp45I	GTSAC	2 cut(s)	491, 782
TspDTI	ATGAA	3 cut(s)	213, 618, 707
TspGWI	ACGGA	3 cut(s)	526, 699, 816
TspRI	CASTG	2 cut(s)	90, 140
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 203
XmaJI	CCTAGG	1 cut(s)	529
XmnI	GAANNNNTTC	2 cut(s)	439, 657
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.