Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Forward (+)

47099725 .. 47103689

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGTATGACCCAGTTCGCTATGGTTGAGGAATTGGCCTCTCTTGTCAAGGACAATCTTTCGTGCAAGCATCTTATTCTCTCAGTGGAAGAAGCTTTGGTGGATTTCCTTCAGAGTGATACCAGGCATTTAGGAGTGTGCCGCGACAGTCAAGTGTTGACATCTGAGATTGGTTTGACATTTTCCCATGAATCTGTTGGTGAAGGAGAGGAGCGGCATTTAGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTATTATTAAAGAGGTCAGAAGCCCCTCCAGTGTTAAGGAAAAAATCTCCTCCGCTTCAACATTCACTAGAGGAGAGAGAAGCAGCATATTTGGCAGCTCGTGAGCGAATATTTTCGAGGGATTTGGGAGAAGTAAAGGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCTAGAGGGCTGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGAGACCAATTTGGTTGTGGAAGCTTGTCATCAGACCCTCACCCCTTTGGACCAAAATGTGAACTCCTGTGGTGAAGTGAAACAGAACAACCGTAGTTTGAATGCATCACCCCCAAGTCTAAGTGAAAGGAAGACATCCCAAAAACAAGATGACAAGATTTCTGGTGCTGTCAGTAGCATATCTCAAAACGGAAGAAAAGGACATGGTGCAGATGAGGAAGAAATCAAAAGGGAACATTTGGGTGCAGCAAAGAGAATGTTTGCTCATGCCCTAGGAATGCGCTCAGGGAAGAATGGTGTTTCATCGAAAGGCAGCGAGATAAAGCATGCTAACATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

321

Amino Acids

35.5

Weight (kDa)

6.25

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUZ	PF12752	119 - 146	1.7e-08	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	142, 214, 371
AcuI	CTGAAG	1 cut(s)	95
AgsI	TTSAA	4 cut(s)	377, 601, 620, 724
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	95, 416, 647
AluI	AGCT	3 cut(s)	95, 416, 647
Alw26I	GTCTC	2 cut(s)	236, 620
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	4 cut(s)	401, 413, 869, 936
Asp700I	GAANNNNTTC	1 cut(s)	430
AspA2I	CCTAGG	2 cut(s)	520, 895
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	212, 655, 707, 723
AvaII	GGWCC	1 cut(s)	673
AvrII	CCTAGG	2 cut(s)	520, 895
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	4 cut(s)	413, 425, 881, 948
BccI	CCATC	2 cut(s)	266, 547
BciT130I	CCWGG	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	236, 620
BfaI	CTAG	4 cut(s)	386, 521, 579, 896
BisI	GCNGC	6 cut(s)	142, 215, 402, 414, 870, 937
BlnI	CCTAGG	2 cut(s)	520, 895
BlsI	GCNGC	6 cut(s)	143, 216, 403, 415, 871, 938
Bme1390I	CCNGG	2 cut(s)	124, 239
Bme18I	GGWCC	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	124, 239
BmrI	ACTGGG	1 cut(s)	7
BmsI	GCATC	5 cut(s)	79, 224, 541, 584, 737
BmuI	ACTGGG	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	907
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	520, 895
Bse1I	ACTGG	3 cut(s)	13, 347, 543
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	520, 895
BseGI	GGATG	5 cut(s)	258, 510, 539, 556, 758
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	5 cut(s)	96, 156, 482, 578, 921
BseNI	ACTGG	3 cut(s)	13, 347, 543
BseRI	GAGGAG	3 cut(s)	224, 357, 404
BseXI	GCAGC	4 cut(s)	413, 425, 881, 948
BsgI	GTGCAG	2 cut(s)	852, 888
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	236, 620
BsmI	GAATGC	2 cut(s)	730, 906
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	620
BspACI	CCGC	3 cut(s)	142, 214, 371
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	5 cut(s)	95, 157, 481, 579, 920
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	620
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	487
BsrI	ACTGG	3 cut(s)	13, 347, 543
BssECI	CCNNGG	2 cut(s)	520, 895
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	520, 895
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	149, 255, 716
BstC8I	GCNNGC	2 cut(s)	68, 951
BstDEI	CTNAG	6 cut(s)	82, 165, 468, 587, 743, 907
BstF5I	GGATG	5 cut(s)	258, 510, 539, 556, 758
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	906
BstMAI	GTCTC	2 cut(s)	236, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	518, 953
BstSCI	CCNGG	2 cut(s)	122, 237
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	413, 425, 881, 948
BstV2I	GAAGAC	1 cut(s)	761
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	5 cut(s)	258, 510, 539, 556, 758
BtsIMutI	CAGTG	3 cut(s)	90, 274, 354
Cac8I	GCNNGC	2 cut(s)	68, 951
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	906
Cfr13I	GGNCC	1 cut(s)	673
CviAII	CATG	7 cut(s)	188, 515, 560, 827, 890, 950, 958
CviJI	RGCY	7 cut(s)	38, 95, 295, 341, 416, 586, 647
CviKI_1	RGCY	7 cut(s)	38, 95, 295, 341, 416, 586, 647
DdeI	CTNAG	6 cut(s)	82, 165, 468, 587, 743, 907
Eco130I	CCWWGG	2 cut(s)	520, 895
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	520, 895
EcoT22I	ATGCAT	1 cut(s)	730
ErhI	CCWWGG	2 cut(s)	520, 895
FaeI	CATG	7 cut(s)	191, 518, 563, 830, 893, 953, 961
FatI	CATG	7 cut(s)	187, 514, 559, 826, 889, 949, 957
Fnu4HI	GCNGC	6 cut(s)	142, 215, 402, 414, 870, 937
FokI	GGATG	5 cut(s)	245, 517, 526, 563, 745
Fsp4HI	GCNGC	6 cut(s)	142, 215, 402, 414, 870, 937
FspBI	CTAG	4 cut(s)	386, 521, 579, 896
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	6 cut(s)	142, 215, 402, 414, 870, 937
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	906
Hin1II	CATG	7 cut(s)	191, 518, 563, 830, 893, 953, 961
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	2 cut(s)	93, 645
HinfI	GANTC	4 cut(s)	191, 299, 458, 531
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	212, 655, 707, 723
Hpy166II	GTNNAC	2 cut(s)	159, 685
Hpy188I	TCNGA	6 cut(s)	114, 166, 337, 471, 504, 657
Hpy188III	TCNNGA	4 cut(s)	419, 548, 560, 579
Hpy8I	GTNNAC	2 cut(s)	159, 685
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	119, 197
HpyCH4III	ACNGT	3 cut(s)	149, 255, 716
HpyCH4V	TGCA	5 cut(s)	66, 570, 728, 833, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	6 cut(s)	82, 165, 468, 587, 743, 907
Hsp92II	CATG	7 cut(s)	191, 518, 563, 830, 893, 953, 961
HspAI	GCGC	1 cut(s)	904
LmnI	GCTCC	2 cut(s)	211, 229
Lsp1109I	GCAGC	4 cut(s)	413, 425, 881, 948
LweI	GCATC	5 cut(s)	79, 224, 541, 584, 737
MaeI	CTAG	4 cut(s)	386, 521, 579, 896
MaeIII	GTNAC	1 cut(s)	463
MbiI	CCGCTC	1 cut(s)	214
MboII	GAAGA	5 cut(s)	101, 766, 828, 854, 925
MluCI	AATT	3 cut(s)	32, 601, 631
MmeI	TCCRAC	1 cut(s)	482
Mph1103I	ATGCAT	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	2 cut(s)	326, 353
MslI	CAYNNNNRTG	1 cut(s)	864
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	124, 239
Mva1269I	GAATGC	2 cut(s)	730, 906
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	1 cut(s)	239
NlaIII	CATG	7 cut(s)	191, 518, 563, 830, 893, 953, 961
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	2 cut(s)	518, 953
PaeI	GCATGC	1 cut(s)	953
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	2 cut(s)	730, 906
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	191, 299, 458, 531
PkrI	GCNGC	6 cut(s)	143, 216, 403, 415, 871, 938
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	673
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	326, 353
SatI	GCNGC	6 cut(s)	142, 215, 402, 414, 870, 937
Sau96I	GGNCC	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	124, 239
SetI	ASST	5 cut(s)	97, 335, 418, 618, 649
SfaNI	GCATC	5 cut(s)	79, 224, 541, 584, 737
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	864
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	3 cut(s)	32, 601, 631
SsiI	CCGC	3 cut(s)	142, 214, 371
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	4 cut(s)	386, 521, 579, 896
StyD4I	CCNGG	2 cut(s)	122, 237
StyI	CCWWGG	2 cut(s)	520, 895
TaaI	ACNGT	3 cut(s)	149, 255, 716
TaqI	TCGA	2 cut(s)	434, 929
TasI	AATT	3 cut(s)	32, 601, 631
TauI	GCSGC	2 cut(s)	144, 217
TfiI	GAWTC	4 cut(s)	191, 299, 458, 531
Tru1I	TTAA	2 cut(s)	326, 353
Tru9I	TTAA	2 cut(s)	326, 353
TscAI	CASTG	3 cut(s)	90, 274, 354
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	4 cut(s)	401, 413, 869, 936
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	204, 915
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	3 cut(s)	90, 274, 354
VpaK11BI	GGWCC	1 cut(s)	673
XbaI	TCTAGA	1 cut(s)	578
XceI	RCATGY	2 cut(s)	518, 953
XcmI	CCANNNNNNNNNTGG	2 cut(s)	194, 637
XmaJI	CCTAGG	2 cut(s)	520, 895
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	4 cut(s)	386, 521, 579, 896
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.