MD12G1258600.v1.1

SUZ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0006548
Physical Location & Seq
Reverse (-)
32536918 .. 32538205
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1258600.v1.1.491

Sequence Viewer

Length: 627 bp
ATGCTAAATGAAACCTTTTTGTTGTTTCTTGTGTTGAGGAAAAAACCACCTCTGCTTCACCATTCACTTGAGGAGAGAGAAGCAGCTTATTTGGCTGCTCGCGAGCGAATATTTTCTAGCGACTTGGGTGAGGTGAAAGAATCTGTCAGGCAGAAGCCACGTAGTGACCCTGTTGTTGCCCGACGGATGATAGCACATGCCCTAGGCCAGAGAATCAATCCTTCCAGTCAGGGTTCCCCTCATGAGGATTGCAAAGCTTCTGGAGGGCAGACCGATGAATTAAATGTTCAAGGCAAGGTTGCCGATGAGGCTAATTTGACTGCAGAATCTTTTCAACATACCATCTCCCTTTCGAACGGAGATATGAACTCGCGTGGTGAAGTGAAAAACAACCACCGTGGTAATAGTGGCTCACCTCTCACCCGAAGTGAAAAGAAGACATCCCAGAAACAAGGTGACCATTATGGAAAAAACGGACATGGTGTAGATGAGGAATGCATCAAAAGGGAGCAGGTGGGAGCAGCAAAGAGGATGTTTGCTAATGCCTTGGGAATGCGTTCAGGGAAGAATGGTTCTCTCTCGAAATGCAGCGAGGTAAAGCATGACAGCACGGAGAGTAACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

209

Amino Acids

22.79

Weight (kDa)

8.97

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUZ PF12752 20 - 41 4e-08 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccII CGCG 2 cut(s) 102, 373
AdeI CACNNNGTG 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 2 cut(s) 290, 335
AloI GAACNNNNNNTCC 2 cut(s) 556, 588
AluBI AGCT 2 cut(s) 86, 257
AluI AGCT 2 cut(s) 86, 257
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 83, 95, 521, 588
Asp700I GAANNNNTTC 3 cut(s) 112, 330, 556
AspA2I CCTAGG 1 cut(s) 202
AsuHPI GGTGA 7 cut(s) 50, 140, 145, 389, 405, 412, 467
AsuII TTCGAA 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 443
BbvI GCAGC 4 cut(s) 82, 95, 533, 600
BccI CCATC 1 cut(s) 350
BfaI CTAG 2 cut(s) 117, 203
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 4 cut(s) 84, 96, 522, 589
BlnI CCTAGG 1 cut(s) 202
BlsI GCNGC 4 cut(s) 85, 97, 523, 590
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 202, 397, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 202, 397, 546
BseGI GGATG 3 cut(s) 192, 440, 537
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 4 cut(s) 82, 95, 533, 600
Bsh1236I CGCG 2 cut(s) 102, 373
BshFI GGCC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 244
BsmI GAATGC 2 cut(s) 500, 558
BsnI GGCC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 353
Bsp68I TCGCGA 1 cut(s) 102
BspANI GGCC 1 cut(s) 207
BspFNI CGCG 2 cut(s) 102, 373
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 502
BspT104I TTCGAA 1 cut(s) 353
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 202, 397, 546
BssT1I CCWWGG 2 cut(s) 202, 546
Bst4CI ACNGT 2 cut(s) 398, 623
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 100, 104
BstDSI CCRYGG 1 cut(s) 397
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 3 cut(s) 192, 440, 537
BstFNI CGCG 2 cut(s) 102, 373
BstMWI GCNNNNNNNGC 2 cut(s) 92, 308
BstNSI RCATGY 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 455
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 102, 373
BstV1I GCAGC 4 cut(s) 82, 95, 533, 600
BstV2I GAAGAC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 3 cut(s) 192, 440, 537
BtuMI TCGCGA 1 cut(s) 102
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 100, 104
CciI TCATGA 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 4 cut(s) 197, 242, 479, 602
CviJI RGCY 7 cut(s) 86, 95, 157, 207, 257, 311, 411
CviKI_1 RGCY 7 cut(s) 86, 95, 157, 207, 257, 311, 411
DraIII CACNNNGTG 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 202, 546
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoT14I CCWWGG 2 cut(s) 202, 546
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 2 cut(s) 202, 546
FaeI CATG 4 cut(s) 200, 245, 482, 605
FaiI YATR 7 cut(s) 198, 243, 339, 365, 465, 480, 603
FatI CATG 4 cut(s) 196, 241, 478, 601
Fnu4HI GCNGC 4 cut(s) 84, 96, 522, 589
FokI GGATG 3 cut(s) 199, 427, 544
Fsp4HI GCNGC 4 cut(s) 84, 96, 522, 589
FspBI CTAG 2 cut(s) 117, 203
GluI GCNGC 4 cut(s) 84, 96, 522, 589
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 4 cut(s) 200, 245, 482, 605
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 140, 213, 326
HphI GGTGA 7 cut(s) 50, 140, 145, 389, 405, 412, 467
Hpy188III TCNNGA 4 cut(s) 101, 242, 261, 580
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 398, 623
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 252, 323, 498, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 308
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 4 cut(s) 200, 245, 482, 605
LmnI GCTCC 2 cut(s) 508, 518
LpnPI CCDG 9 cut(s) 133, 183, 215, 221, 238, 246, 458, 497, 546
Lsp1109I GCAGC 4 cut(s) 82, 95, 533, 600
LweI GCATC 1 cut(s) 507
MaeI CTAG 2 cut(s) 117, 203
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 3 cut(s) 164, 455, 617
MboII GAAGA 2 cut(s) 448, 577
MluCI AATT 2 cut(s) 278, 313
Mph1103I ATGCAT 1 cut(s) 500
MroXI GAANNNNTTC 3 cut(s) 112, 330, 556
MseI TTAA 1 cut(s) 281
Mva1269I GAATGC 2 cut(s) 500, 558
MvnI CGCG 2 cut(s) 102, 373
MwoI GCNNNNNNNGC 2 cut(s) 92, 308
NlaIII CATG 4 cut(s) 200, 245, 482, 605
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 164, 455
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 1 cut(s) 200
NspV TTCGAA 1 cut(s) 353
PagI TCATGA 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 502
PctI GAATGC 2 cut(s) 500, 558
PdmI GAANNNNTTC 3 cut(s) 112, 330, 556
PfeI GAWTC 3 cut(s) 140, 213, 326
PkrI GCNGC 4 cut(s) 85, 97, 523, 590
Ppu21I YACGTR 1 cut(s) 161
PspEI GGTNACC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 325
RruI TCGCGA 1 cut(s) 102
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 4 cut(s) 84, 96, 522, 589
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 278, 313
SspI AATATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 117, 203
StyI CCWWGG 2 cut(s) 202, 546
TaaI ACNGT 2 cut(s) 398, 623
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 353, 581
TaqII GACCGA 1 cut(s) 287
TasI AATT 2 cut(s) 278, 313
TfiI GAWTC 3 cut(s) 140, 213, 326
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 2 cut(s) 164, 455
TseI GCWGC 4 cut(s) 83, 95, 521, 588
Tsp45I GTSAC 2 cut(s) 164, 455
TspDTI ATGAA 3 cut(s) 24, 291, 380
TspGWI ACGGA 4 cut(s) 199, 372, 489, 626
XceI RCATGY 1 cut(s) 200
XmaJI CCTAGG 1 cut(s) 202
XmnI GAANNNNTTC 3 cut(s) 112, 330, 556
XspI CTAG 2 cut(s) 117, 203
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.