pycom04g21330

SUZ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0006548
Physical Location & Seq
Reverse (-)
22547521 .. 22547952
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21330.1

Sequence Viewer

Length: 432 bp
ATGATAGCGCATGCACTAGGCCAGAGAATCAATCCATCCAGTCAGGGTTCTCCTCACGAGCATTGCAAAGCTTCTGGAGGGCAGACTGATGAATTACGTGTTCAAGGCAATGTTGTAGATGAGGCTGATTTGACCGCAGAATCTTTTCAGCATAGAGTCTCCCTTTCAAACGGAGATATGAACTCGCGTGGTGAAGTGAAAAACAACCACCGTAGTAATAGTGGCCCAGCTCTGACCCGAAGTGAAAAGAAGACATCCCAGAAACAAGGTGACAATAATGGAAGAAGTGGACATGGTGTAGATGAGGAATACATCAAAAGGGAGCAAGTGGGAGCAGCAAAGAGGATGTTTGCTAATGCCTTGGGAATGCGTTCAGGGAAGAATGGTTCTCTCTCGAAATGCAGCGAGATAAAGCATGATAGCACGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

144

Amino Acids

15.44

Weight (kDa)

8.62

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AciI CCGC 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 2 cut(s) 104, 168
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 2 cut(s) 71, 230
AluI AGCT 2 cut(s) 71, 230
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 2 cut(s) 19, 223
ApeKI GCWGC 2 cut(s) 335, 402
Asp700I GAANNNNTTC 2 cut(s) 144, 370
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 203, 281
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 347, 414
BccI CCATC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 336, 403
BlsI GCNGC 2 cut(s) 337, 404
BmgT120I GGNCC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 2 cut(s) 61, 115
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 35, 254, 351
BseMI GCAATG 2 cut(s) 61, 115
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 347, 414
BseYI CCCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 21, 225
BsmAI GTCTC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 2 cut(s) 21, 225
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 21, 225
BspFNI CGCG 1 cut(s) 187
BsrDI GCAATG 2 cut(s) 61, 115
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 360
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 12
BstF5I GGATG 3 cut(s) 35, 254, 351
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 14
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 347, 414
BstV2I GAAGAC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 21, 225
BtsCI GGATG 3 cut(s) 35, 254, 351
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 3 cut(s) 11, 293, 416
CviJI RGCY 5 cut(s) 21, 71, 125, 225, 230
CviKI_1 RGCY 5 cut(s) 21, 71, 125, 225, 230
Eco130I CCWWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 14, 296, 419
FaiI YATR 5 cut(s) 12, 153, 179, 294, 417
FatI CATG 3 cut(s) 10, 292, 415
Fnu4HI GCNGC 2 cut(s) 336, 403
FokI GGATG 3 cut(s) 22, 241, 358
Fsp4HI GCNGC 2 cut(s) 336, 403
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 336, 403
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 21, 225
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 14, 296, 419
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 27, 140, 156
HphI GGTGA 2 cut(s) 203, 281
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 3 cut(s) 56, 75, 394
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 14, 66, 402
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 14, 296, 419
HspAI GCGC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 322, 332
LpnPI CCDG 7 cut(s) 29, 35, 52, 60, 240, 272, 360
Lsp1109I GCAGC 2 cut(s) 347, 414
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 3 cut(s) 262, 294, 391
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 5 cut(s) 63, 71, 115, 298, 336
MroXI GAANNNNTTC 2 cut(s) 144, 370
Mva1269I GAATGC 1 cut(s) 372
MvnI CGCG 1 cut(s) 187
NlaIII CATG 3 cut(s) 14, 296, 419
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 1 cut(s) 14
PaeI GCATGC 1 cut(s) 14
PctI GAATGC 1 cut(s) 372
PdmI GAANNNNTTC 2 cut(s) 144, 370
PfeI GAWTC 2 cut(s) 27, 140
PkrI GCNGC 2 cut(s) 337, 404
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 224
SatI GCNGC 2 cut(s) 336, 403
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 165
SetI ASST 4 cut(s) 73, 100, 232, 271
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 395
TasI AATT 1 cut(s) 92
TfiI GAWTC 2 cut(s) 27, 140
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 335, 402
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 105, 194
TspGWI ACGGA 1 cut(s) 186
XceI RCATGY 1 cut(s) 14
XmnI GAANNNNTTC 2 cut(s) 144, 370
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.