Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Forward (+)

559148 .. 563287

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCTGTCGGTGAAGGAGAGGAGCGGCATTTAGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTATTATTAAAGAGGTCAGAAGCCCCTCCAGTGTTAAGGAAAAAATCTCCTCCGCTTCAACATTCACTAGAGGAGAGAGAAGCAGCATATTTGGCAGCTCGTGAGCGAATATTTTCGAGGGATTTGGGAGAAGTAAAGGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCCAGAGGGCTGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGAGACCAATTTGATTGTGGAAGCTTGTCATCAGACCCTCACCCCGTTGGACCAAAATGTGAACTCCTGTGGTGAAGTGAAAAAGAACAACCGTAGTTTGAATGCATCAGCCCCAAGTCTAAGTGAAAGGAAGACATCCCAAAAACAAGATGACAAGATTTCTGGTGCTGTCAGCAGCATATCTCAAAACGGAAGAAAAGGACATGGTGCAGATGAGGAAGACATCAAAAGGGAACATTTGGGTGCAGCAAAGAGGATGTTTGCTCATGCCCTAGGAATGCGCTCAGGGAAGAATGGTGTTTCATCAAAAGGCAGCGAGATAAAGCATGTTACCATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

278

Amino Acids

30.87

Weight (kDa)

8.25

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	1 - 34	2e-08	R3H domain
SUZ	PF12752	76 - 103	1.4e-08	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	2 cut(s)	85, 242
AgsI	TTSAA	4 cut(s)	248, 472, 491, 595
AluBI	AGCT	2 cut(s)	287, 518
AluI	AGCT	2 cut(s)	287, 518
Alw26I	GTCTC	2 cut(s)	107, 491
ApeKI	GCWGC	5 cut(s)	272, 284, 669, 740, 807
Asp700I	GAANNNNTTC	1 cut(s)	301
AspA2I	CCTAGG	2 cut(s)	391, 766
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	83, 526, 578
AvaII	GGWCC	1 cut(s)	544
AvrII	CCTAGG	2 cut(s)	391, 766
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	3 cut(s)	11, 632, 720
BbvI	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BccI	CCATC	2 cut(s)	137, 418
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	107, 491
BfaI	CTAG	3 cut(s)	257, 392, 767
BisI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
BlnI	CCTAGG	2 cut(s)	391, 766
BlsI	GCNGC	6 cut(s)	87, 274, 286, 671, 742, 809
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	5 cut(s)	37, 95, 412, 455, 608
BpiI	GAAGAC	3 cut(s)	11, 632, 720
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	391, 766, 828
Bse1I	ACTGG	2 cut(s)	218, 414
Bse3DI	GCAATG	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	391, 766, 828
BseGI	GGATG	7 cut(s)	129, 381, 410, 427, 446, 629, 756
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	353, 449, 792
BseNI	ACTGG	2 cut(s)	218, 414
BseRI	GAGGAG	3 cut(s)	95, 228, 275
BseXI	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BsgI	GTGCAG	2 cut(s)	723, 759
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	107, 491
BsmI	GAATGC	2 cut(s)	601, 777
Bso31I	GGTCTC	1 cut(s)	491
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	2 cut(s)	85, 242
BspCNI	CTCAG	3 cut(s)	352, 450, 791
BspHI	TCATGA	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	218, 414
BssECI	CCNNGG	3 cut(s)	391, 766, 828
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	3 cut(s)	391, 766, 828
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	17, 126, 587
BstDEI	CTNAG	4 cut(s)	339, 458, 614, 778
BstDSI	CCRYGG	1 cut(s)	828
BstF5I	GGATG	7 cut(s)	129, 381, 410, 427, 446, 629, 756
BstHHI	GCGC	1 cut(s)	777
BstMAI	GTCTC	2 cut(s)	107, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	389, 824
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BstV2I	GAAGAC	3 cut(s)	11, 632, 720
BtgI	CCRYGG	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	7 cut(s)	129, 381, 410, 427, 446, 629, 756
BtsIMutI	CAGTG	2 cut(s)	145, 225
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	777
Cfr13I	GGNCC	1 cut(s)	544
CviAII	CATG	7 cut(s)	59, 386, 431, 698, 761, 821, 829
CviJI	RGCY	6 cut(s)	166, 212, 287, 457, 518, 605
CviKI_1	RGCY	6 cut(s)	166, 212, 287, 457, 518, 605
DdeI	CTNAG	4 cut(s)	339, 458, 614, 778
Eco130I	CCWWGG	3 cut(s)	391, 766, 828
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	391, 766, 828
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	391, 766, 828
FaeI	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
FatI	CATG	7 cut(s)	58, 385, 430, 697, 760, 820, 828
Fnu4HI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
FokI	GGATG	7 cut(s)	116, 388, 397, 433, 434, 616, 763
Fsp4HI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
FspBI	CTAG	3 cut(s)	257, 392, 767
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	62, 170, 329, 402
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	83, 526, 578
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	208, 342, 375, 528
Hpy188III	TCNNGA	4 cut(s)	290, 419, 431, 450
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	3 cut(s)	17, 126, 587
HpyCH4V	TGCA	6 cut(s)	28, 38, 441, 599, 704, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	339, 458, 614, 778
Hsp92II	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
HspAI	GCGC	1 cut(s)	775
LmnI	GCTCC	2 cut(s)	82, 100
Lsp1109I	GCAGC	5 cut(s)	284, 296, 681, 752, 819
LweI	GCATC	5 cut(s)	37, 95, 412, 455, 608
MaeI	CTAG	3 cut(s)	257, 392, 767
MaeIII	GTNAC	2 cut(s)	334, 823
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	5 cut(s)	11, 637, 699, 725, 796
MluCI	AATT	2 cut(s)	472, 502
MmeI	TCCRAC	2 cut(s)	353, 522
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	2 cut(s)	197, 224
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	2 cut(s)	601, 777
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	828
NlaIII	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	2 cut(s)	389, 824
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	2 cut(s)	601, 777
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	62, 170, 329, 402
PkrI	GCNGC	6 cut(s)	87, 274, 286, 671, 742, 809
PspPI	GGNCC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	197, 224
SatI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	4 cut(s)	206, 289, 489, 520
SfaNI	GCATC	5 cut(s)	37, 95, 412, 455, 608
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	735
Sse9I	AATT	2 cut(s)	472, 502
SsiI	CCGC	2 cut(s)	85, 242
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	3 cut(s)	257, 392, 767
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	391, 766, 828
TaaI	ACNGT	3 cut(s)	17, 126, 587
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	472, 502
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	62, 170, 329, 402
Tru1I	TTAA	2 cut(s)	197, 224
Tru9I	TTAA	2 cut(s)	197, 224
TscAI	CASTG	2 cut(s)	145, 225
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	272, 284, 669, 740, 807
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 75, 786
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	2 cut(s)	145, 225
VpaK11BI	GGWCC	1 cut(s)	544
XceI	RCATGY	2 cut(s)	389, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmaJI	CCTAGG	2 cut(s)	391, 766
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	3 cut(s)	257, 392, 767
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.