Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006548

Physical Location & Seq

Genomic Coordinates Reverse (-)

30370043 .. 30373766

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G359200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGTATGACCCAGTTCGCTATGGTTGAGGAATTGGCTTCTCTTGTCAAAGACAATCTTTCTTGCAAGCATCTTATTCTCTCAGTGGAAGAGGCCTTGGTGGACTTCCTTCAGAGTGATACCAGTTCCAGTGGGGTCTTGGAGTTGGAACCCATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGACATATTTGGCTTTTCCCATGAATCCGTTGGTGAAGGAGATGCCCGGCACTTAATTTTGGAGCGATGCCCGGAGACATCAATACCTTCCATCCTTGTTGGTGATATCTTGTGGCAGTATGATGAGCCTGATTCTCCAACTACGTCACACCTATTATTAAAGAGGACGGAAGCTCCCCCAGTGGTAAGGAAAAAACCTCCTTTGTTTCAACACTCACTTGAGGAGAGAGAAGCTGCTTATTTGGCTGCTCGTGAGCGAATATTTTCAAGGGACTTGGGAGAGGTAAAGGAATCTGTCAAGCAGAAGCCACGTAGTGTCCCTGTTGTTGCCCGCCGAATGATAGCACATGCCCTAGGCCAAAGAATCAATCCATCCAGTCAAGATTCCCTTCATGAAGATTGCAAAGTTTTGGGAGGGCACACTAGTGAATTGAATGTGCAAGACAAAGTTGAAGATGAGCCCAGTTTGACCTTGGAAGCTTTTCAGAAGGAAGGAAATATGAACTCGTGTGGTGAAGTGAAAAAGAACAGCCGTAGTAACAATGCACCACCTTTAACTCTAAGTGAAAGGAAGACACCCAAAAAACAAGGCGACAAGATTTCGGGTGGTTGCAACAGTATATCTCAGAATGGAAGAAGTGGACATGGTGTAGACGAGGAATACTTCAAAAGGGAACATTTGGGAGCGGCAAAGAGGATGTTTGCTCATGCCTTGGGAATGCGCTCAGGGAGGAATGATGTTCTATCAAAATGTAGCGAGAGAAAGCATGTTGACACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

325

Amino Acids

36.1

Weight (kDa)

6.25

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00730
malus_domestica	MD04G1241800.v1.1 MD12G1258600.v1.1
prunus_persica	Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1 Prupe.6G359200_v2.0.a1
pyrus_communis	pycom04g21330 pycom12g23720
rosa_chinensis	RchiOBHm_Chr3g0448201
rosa_laevigata	RLG00000025938 RLG00000026018
rosa_multiflora	Rmu_sc0005969.1_g000035 Rmu_sc0013667.1_g000003
rosa_roxburghii	Rroxscaffold_6G00426340
rosa_rugosa	Rorug02G0608500 Rorug02G0608600 Rorug02G0608700 Rorug02G0608700
rosa_samantha	Rh3AG008800 Rh3BG008300 Rh3CG008400 Rh3DG009000
rosa_wichuraiana	Rw3G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	2 cut(s)	523, 878
AcuI	CTGAAG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	401, 459, 625, 644, 859
AhlI	ACTAGT	1 cut(s)	614
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	3 cut(s)	365, 425, 671
AluI	AGCT	3 cut(s)	365, 425, 671
Alw26I	GTCTC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	93, 547
ApeKI	GCWGC	2 cut(s)	425, 437
Asp700I	GAANNNNTTC	2 cut(s)	454, 672
AspA2I	CCTAGG	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	915
AsuC2I	CCSGG	2 cut(s)	238, 263
AsuHPI	GGTGA	3 cut(s)	236, 305, 716
AvrII	CCTAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	654
BauI	CACGAG	2 cut(s)	441, 697
BbsI	GAAGAC	2 cut(s)	164, 770
BbvI	GCAGC	2 cut(s)	412, 424
BccI	CCATC	2 cut(s)	290, 571
BceAI	ACGGC	1 cut(s)	708
BcnI	CCSGG	2 cut(s)	238, 263
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	2 cut(s)	545, 615
BisI	GCNGC	3 cut(s)	426, 438, 879
BlnI	CCTAGG	1 cut(s)	544
BlsI	GCNGC	3 cut(s)	427, 439, 880
Bme1390I	CCNGG	2 cut(s)	238, 263
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	238, 263
BmrI	ACTGGG	3 cut(s)	7, 365, 648
BmsI	GCATC	4 cut(s)	79, 190, 223, 248
BmuI	ACTGGG	3 cut(s)	7, 365, 648
BpiI	GAAGAC	2 cut(s)	164, 770
Bpu10I	CCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	238, 263
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	96, 544, 663, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bse1I	ACTGG	6 cut(s)	13, 123, 129, 371, 567, 654
BseDI	CCNNGG	4 cut(s)	96, 544, 663, 903
BseGI	GGATG	3 cut(s)	282, 563, 894
BseMII	CTCAG	3 cut(s)	96, 830, 930
BseNI	ACTGG	6 cut(s)	13, 123, 129, 371, 567, 654
BseRI	GAGGAG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	412, 424
BshFI	GGCC	2 cut(s)	95, 549
BsiSI	CCGG	2 cut(s)	238, 263
BslFI	GGGAC	2 cut(s)	476, 494
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	476, 494
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	2 cut(s)	95, 549
Bsp1286I	GDGCHC	2 cut(s)	612, 654
BspACI	CCGC	2 cut(s)	523, 878
BspANI	GGCC	2 cut(s)	95, 549
BspCNI	CTCAG	3 cut(s)	95, 829, 929
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	878
BsrI	ACTGG	6 cut(s)	13, 123, 129, 371, 567, 654
BssECI	CCNNGG	4 cut(s)	96, 544, 663, 903
BssSI	CACGAG	2 cut(s)	441, 697
BssT1I	CCWWGG	4 cut(s)	96, 544, 663, 903
Bst2BI	CACGAG	2 cut(s)	441, 697
Bst4CI	ACNGT	2 cut(s)	170, 809
Bst6I	CTCTTC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	68, 523
BstDEI	CTNAG	4 cut(s)	82, 752, 816, 916
BstF5I	GGATG	3 cut(s)	282, 563, 894
BstHHI	GCGC	1 cut(s)	915
BstMAI	GTCTC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	542, 962
BstSCI	CCNGG	2 cut(s)	236, 261
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	412, 424
BstV2I	GAAGAC	2 cut(s)	164, 770
BsuRI	GGCC	2 cut(s)	95, 549
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	282, 563, 894
BtsIMutI	CAGTG	3 cut(s)	90, 136, 378
Cac8I	GCNNGC	2 cut(s)	68, 523
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	915
CviAII	CATG	7 cut(s)	154, 212, 539, 584, 836, 899, 959
DdeI	CTNAG	4 cut(s)	82, 752, 816, 916
DraIII	CACNNNGTG	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	4 cut(s)	96, 544, 663, 903
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	4 cut(s)	96, 544, 663, 903
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	4 cut(s)	96, 544, 663, 903
FaeI	CATG	7 cut(s)	157, 215, 542, 587, 839, 902, 962
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 564, 596
FaqI	GGGAC	2 cut(s)	476, 494
FatI	CATG	7 cut(s)	153, 211, 538, 583, 835, 898, 958
FauI	CCCGC	1 cut(s)	530
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	3 cut(s)	426, 438, 879
FokI	GGATG	3 cut(s)	269, 550, 901
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	3 cut(s)	426, 438, 879
FspBI	CTAG	2 cut(s)	545, 615
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	3 cut(s)	426, 438, 879
HaeIII	GGCC	2 cut(s)	95, 549
HapII	CCGG	2 cut(s)	238, 263
HhaI	GCGC	1 cut(s)	915
Hin1II	CATG	7 cut(s)	157, 215, 542, 587, 839, 902, 962
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	5 cut(s)	215, 323, 482, 555, 575
HpaII	CCGG	2 cut(s)	238, 263
HphI	GGTGA	3 cut(s)	236, 305, 716
Hpy166II	GTNNAC	4 cut(s)	103, 833, 844, 964
Hpy188I	TCNGA	3 cut(s)	114, 678, 819
Hpy188III	TCNNGA	3 cut(s)	443, 572, 584
Hpy8I	GTNNAC	4 cut(s)	103, 833, 844, 964
HpyAV	CCTTC	6 cut(s)	119, 221, 288, 590, 673, 677
HpyCH4III	ACNGT	2 cut(s)	170, 809
HpyCH4IV	ACGT	2 cut(s)	335, 502
HpyCH4V	TGCA	7 cut(s)	66, 181, 191, 594, 631, 737, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	4 cut(s)	82, 752, 816, 916
HpySE526I	ACGT	2 cut(s)	335, 502
Hsp92II	CATG	7 cut(s)	157, 215, 542, 587, 839, 902, 962
HspAI	GCGC	1 cut(s)	913
LmnI	GCTCC	3 cut(s)	253, 370, 875
Lsp1109I	GCAGC	2 cut(s)	412, 424
LweI	GCATC	4 cut(s)	79, 190, 223, 248
MaeI	CTAG	2 cut(s)	545, 615
MaeII	ACGT	2 cut(s)	335, 502
MaeIII	GTNAC	2 cut(s)	336, 728
MbiI	CCGCTC	1 cut(s)	878
MboII	GAAGA	6 cut(s)	101, 164, 599, 656, 775, 837
MhlI	GDGCHC	2 cut(s)	612, 654
MluCI	AATT	3 cut(s)	32, 246, 620
MmeI	TCCRAC	2 cut(s)	126, 353
MroXI	GAANNNNTTC	2 cut(s)	454, 672
MseI	TTAA	3 cut(s)	245, 350, 746
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	2 cut(s)	238, 263
MspR9I	CCNGG	2 cut(s)	238, 263
Mva1269I	GAATGC	1 cut(s)	915
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	2 cut(s)	238, 263
NlaIII	CATG	7 cut(s)	157, 215, 542, 587, 839, 902, 962
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	336
NspI	RCATGY	2 cut(s)	542, 962
OliI	CACNNNNGTG	1 cut(s)	615
PagI	TCATGA	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	2 cut(s)	454, 672
PfeI	GAWTC	5 cut(s)	215, 323, 482, 555, 575
PkrI	GCNGC	3 cut(s)	427, 439, 880
Ppu21I	YACGTR	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	245, 350, 746
SatI	GCNGC	3 cut(s)	426, 438, 879
ScrFI	CCNGG	2 cut(s)	238, 263
SduI	GDGCHC	2 cut(s)	612, 654
SfaNI	GCATC	4 cut(s)	79, 190, 223, 248
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	3 cut(s)	32, 246, 620
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	523, 878
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	545, 615
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	236, 261
StyI	CCWWGG	4 cut(s)	96, 544, 663, 903
TaaI	ACNGT	2 cut(s)	170, 809
TaiI	ACGT	2 cut(s)	338, 505
TasI	AATT	3 cut(s)	32, 246, 620
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	5 cut(s)	215, 323, 482, 555, 575
Tru1I	TTAA	3 cut(s)	245, 350, 746
Tru9I	TTAA	3 cut(s)	245, 350, 746
TscAI	CASTG	3 cut(s)	90, 136, 378
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	2 cut(s)	425, 437
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	5 cut(s)	170, 228, 572, 600, 707
TspGWI	ACGGA	2 cut(s)	208, 374
TspRI	CASTG	3 cut(s)	90, 136, 378
XceI	RCATGY	2 cut(s)	542, 962
XcmI	CCANNNNNNNNNTGG	3 cut(s)	136, 218, 661
XmaJI	CCTAGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	2 cut(s)	454, 672
XspI	CTAG	2 cut(s)	545, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.