Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011875

Physical Location & Seq

Genomic Coordinates Forward (+)

1785546 .. 1786973

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACAAGTCCAACGACAACGATTGGTTCCGAATATCCGCCGCCATCGGTGGACTGTTCAATATCCCCATCACCTACCCTGCCACTGCATCGGAAATCGAGCTCCCTCAGCTAGACGGCAAGACCCAAAAGAAGATCTGCTTGACAGTGCATTTCAAGCCGCTTTGGGCCAAGAACTGTCCAAGATTTGGTATGGCACATGCACTTTGTTTGGGTCTTGCACCATGGCTTGCTGTAATCATGCTTATAAGAATAGCACATGGTTTTTCTTTTTTATATGAAGTTTATGAAAAGAGGATTGTGGCTGAAGCTGGATGCTTCACAGTATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071568 GO:0071569 GO:0071704 GO:0140096 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFC1

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

8.76

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFC1	PF08694	20 - 81	3.5e-28	Ubiquitin-fold modifier-conjugating enzyme 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27530
fragaria_vesca	FvH4_5g33720 FvH4_5g33720
malus_domestica	MD05G1007500.v1.1 MD08G1209200.v1.1 MD15G1393200.v1.1
prunus_persica	Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1
pyrus_communis	pycom05g10270 pycom08g18060 pycom15g35350
rosa_chinensis	RchiOBHm_Chr7g0232851
rosa_laevigata	RLG00000001313
rosa_multiflora	Rmu_ssc0000018.1_g000017
rosa_roxburghii	Rroxscaffold_3G00227850
rosa_rugosa	Rorug07G0276400
rosa_samantha	Rh7CG450300
rosa_wichuraiana	Rw7G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	3 cut(s)	39, 42, 161
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	61, 157
AluBI	AGCT	3 cut(s)	103, 112, 311
AluI	AGCT	3 cut(s)	103, 112, 311
Alw21I	GWGCWC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	53, 77
BceAI	ACGGC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	2 cut(s)	42, 161
BlsI	GCNGC	2 cut(s)	43, 162
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	2 cut(s)	98, 305
Bpu10I	CCTNAGC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	3 cut(s)	39, 42, 161
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	57, 148, 179, 325
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 157
BstNSI	RCATGY	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 153
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	168
CviAII	CATG	4 cut(s)	200, 225, 241, 260
CviJI	RGCY	7 cut(s)	103, 112, 160, 170, 229, 305, 311
CviKI_1	RGCY	7 cut(s)	103, 112, 160, 170, 229, 305, 311
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	203, 228, 244, 263
FaiI	YATR	9 cut(s)	194, 201, 226, 242, 248, 261, 277, 279, 288
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	199, 224, 240, 259
Fnu4HI	GCNGC	2 cut(s)	42, 161
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	42, 161
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	42, 161
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	203, 228, 244, 263
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	32, 94
Hpy8I	GTNNAC	1 cut(s)	53
HpyCH4III	ACNGT	4 cut(s)	57, 148, 179, 325
HpyCH4V	TGCA	4 cut(s)	89, 151, 203, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 157
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	203, 228, 244, 263
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	2 cut(s)	93, 297
LweI	GCATC	2 cut(s)	98, 305
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	117, 288
MwoI	GCNNNNNNNGC	2 cut(s)	109, 157
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	4 cut(s)	203, 228, 244, 263
NlaIV	GGNNCC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	43, 162
PsiI	TTATAA	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	2 cut(s)	42, 161
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	4 cut(s)	77, 105, 114, 313
SfaNI	GCATC	2 cut(s)	98, 305
SsiI	CCGC	3 cut(s)	39, 42, 161
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	4 cut(s)	57, 148, 179, 325
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	2 cut(s)	44, 163
TscAI	CASTG	2 cut(s)	91, 153
TspDTI	ATGAA	3 cut(s)	17, 294, 303
TspRI	CASTG	2 cut(s)	91, 153
Van91I	CCANNNNNTGG	1 cut(s)	188
XceI	RCATGY	1 cut(s)	203
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.