Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011875

Physical Location & Seq

Genomic Coordinates Forward (+)

13648504 .. 13650286

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACAAGTCCAATGACAACGATTGGTTCCGAATCTCAGCTGCCAATCCCGAGGGTACACAATGGACTGGCAAGTGCTGGTACGTCTACAACCTCCTCAAGTACGAGTTCGATATGTTCGATATGCTCATCACCTACCCCGCCAACGCACCGGAATTCGAGCTCCCTCAGCTAGACGGTAGGACCCAAAAGATGTATAGAGGGCGGAAGATCTGCTTGACAGTGCATTTCAAGCCGCTTTGGGCCAAGAACTGTCCAAGATTTGGTATGGCACATGCACTTTGTTTGGGTCTTGCACCATGGCTTGCTGCATTCATGCTTATAAGAATAGCACATGGTTTTTCTTTTTTATATGAAGTTTATGAAAAGAGGATTGTGGCTGAAGCTGGATGCTTCACAGTATCGTTGACATTTTCTAGAGGGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071568 GO:0071569 GO:0071704 GO:0140096 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFC1

Protein Analysis

144

Amino Acids

16.57

Weight (kDa)

8.84

Isoelectric Point (pI)

23.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27530
fragaria_vesca	FvH4_5g33720 FvH4_5g33720
malus_domestica	MD05G1007500.v1.1 MD08G1209200.v1.1 MD15G1393200.v1.1
prunus_persica	Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1
pyrus_communis	pycom05g10270 pycom08g18060 pycom15g35350
rosa_chinensis	RchiOBHm_Chr7g0232851
rosa_laevigata	RLG00000001313
rosa_multiflora	Rmu_ssc0000018.1_g000017
rosa_roxburghii	Rroxscaffold_3G00227850
rosa_rugosa	Rorug07G0276400
rosa_samantha	Rh7CG450300
rosa_wichuraiana	Rw7G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	141, 205, 236
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	58, 83, 104
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	4 cut(s)	41, 163, 172, 386
AluI	AGCT	4 cut(s)	41, 163, 172, 386
Alw21I	GWGCWC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	41, 308
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	183, 243
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	28, 295
BfaI	CTAG	2 cut(s)	173, 417
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	42, 236, 309
BlsI	GCNGC	3 cut(s)	43, 237, 310
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	183, 243
BmiI	GGNNCC	2 cut(s)	29, 185
BmsI	GCATC	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	51, 299
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	51, 299
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	51, 182
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	28, 295
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	3 cut(s)	141, 205, 236
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	50, 181
BspHI	TCATGA	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	29, 185
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	51, 299
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	4 cut(s)	179, 223, 254, 400
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	37, 168
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 232
BstNSI	RCATGY	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	28, 295
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	183, 243
Csp6I	GTAC	3 cut(s)	57, 82, 103
CviAII	CATG	5 cut(s)	275, 300, 316, 335, 429
CviJI	RGCY	8 cut(s)	41, 163, 172, 235, 245, 304, 380, 386
CviKI_1	RGCY	8 cut(s)	41, 163, 172, 235, 245, 304, 380, 386
CviQI	GTAC	3 cut(s)	57, 82, 103
DdeI	CTNAG	2 cut(s)	37, 168
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	5 cut(s)	278, 303, 319, 338, 432
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	5 cut(s)	274, 299, 315, 334, 428
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	42, 236, 309
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	42, 236, 309
FspBI	CTAG	2 cut(s)	173, 417
GluI	GCNGC	3 cut(s)	42, 236, 309
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	5 cut(s)	278, 303, 319, 338, 432
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	59, 88, 408
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	3 cut(s)	50, 417, 429
Hpy8I	GTNNAC	3 cut(s)	59, 88, 408
HpyCH4III	ACNGT	4 cut(s)	179, 223, 254, 400
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	226, 278, 296, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 232
HpyF3I	CTNAG	2 cut(s)	37, 168
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	278, 303, 319, 338, 432
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	54, 64, 165, 372
Lsp1109I	GCAGC	2 cut(s)	28, 295
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	173, 417
MaeII	ACGT	1 cut(s)	84
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	155
MnlI	CCTC	7 cut(s)	46, 104, 107, 177, 194, 363, 413
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	169, 232
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	5 cut(s)	278, 303, 319, 338, 432
NlaIV	GGNNCC	2 cut(s)	29, 185
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	43, 237, 310
PpuMI	RGGWCCY	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	29, 185
PspPI	GGNCC	2 cut(s)	183, 243
PspPPI	RGGWCCY	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	3 cut(s)	58, 83, 104
RsaNI	GTAC	3 cut(s)	57, 82, 103
SacI	GAGCTC	1 cut(s)	165
SatI	GCNGC	3 cut(s)	42, 236, 309
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	183, 243
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	43, 87, 96, 137, 165, 174, 388
SfaNI	GCATC	1 cut(s)	380
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	3 cut(s)	141, 205, 236
SspMI	CTAG	2 cut(s)	173, 417
SstI	GAGCTC	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	179, 223, 254, 400
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	111, 120, 159
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	41, 308
TspDTI	ATGAA	5 cut(s)	17, 304, 369, 378, 417
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	173, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.