Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011875

Physical Location & Seq

Genomic Coordinates Reverse (-)

12125427 .. 12128519

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGGTTGGGACCCGAACACGAAGTCGACGCTGACCCAGATCCCGCTGCTGACGACGAAGGCCGGGCCGCGAGATGGGCCGGCGTGGACCCAGAGGCTGAAAGAGGAGTACAAGTCGCTGATCGCCTACACCCAGATGAACAAGTCCAACGACAACGATTGGTTCCGAATCTCGGCGGCCAATCCCGAAGGGACACGTTGGACCGGCAAGTGCTGGTACGTCCACAACCTCCTCAAGTACGAGTTCGACCTCCAGTTCGATATTCCGGTCACTTACCCTGCCACCGCGCCGGAGCTCGAGCTCCCTCAGCTCGATGGGAAAACCCAAAAGGTCCGGGGTTTTGTTTTGATTTTACGGTTTTGCCATTGGTTGTTTGTGAGTGTGGTTTTTTTTTTGAATGGTTTTGTGATTGGTGCAGATGTACAGGGGAGGGAAGATTTGCTTGACCGTGCATTTCAAGCCGCTTTGGGCCAAAAACTGATATTGAAATTGAAAGCTCATTCTGTTAAGGTTATTGTTTGGGCAGTTGGCCAGGGGAACTTGGAGAGCCCTAGATTTGGTATTGCACATGCTCTCTGTTTGGGTCTTGCTCCATGGCTTGCAGCAGAGATACCCATTCTTGTCGATTCTGGTATGGTCAAGCACAAAGATGATGCAGCTACATCGGCTGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071568 GO:0071569 GO:0071704 GO:0140096 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFC1

Protein Analysis

226

Amino Acids

25.31

Weight (kDa)

6.96

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFC1	PF08694	8 - 112	4e-48	Ubiquitin-fold modifier-conjugating enzyme 1
UFC1	PF08694	183 - 215	2e-11	Ubiquitin-fold modifier-conjugating enzyme 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27530
fragaria_vesca	FvH4_5g33720 FvH4_5g33720
malus_domestica	MD05G1007500.v1.1 MD08G1209200.v1.1 MD15G1393200.v1.1
prunus_persica	Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1
pyrus_communis	pycom05g10270 pycom08g18060 pycom15g35350
rosa_chinensis	RchiOBHm_Chr7g0232851
rosa_laevigata	RLG00000001313
rosa_multiflora	Rmu_ssc0000018.1_g000017
rosa_roxburghii	Rroxscaffold_3G00227850
rosa_rugosa	Rorug07G0276400
rosa_samantha	Rh7CG450300
rosa_wichuraiana	Rw7G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	2 cut(s)	73, 290
AciI	CCGC	5 cut(s)	47, 71, 179, 288, 465
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	2 cut(s)	180, 532
AfaI	GTAC	4 cut(s)	113, 221, 242, 426
AfiI	CCNNNNNNNGG	3 cut(s)	77, 175, 560
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	400, 461, 490, 496
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	298, 304, 313, 500, 662
AluI	AGCT	5 cut(s)	298, 304, 313, 500, 662
Alw21I	GWGCWC	2 cut(s)	300, 306
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	6 cut(s)	63, 68, 80, 180, 472, 532
ApeKI	GCWGC	3 cut(s)	49, 605, 659
ArsI	GACNNNNNNTTYG	4 cut(s)	11, 43, 242, 274
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	7 cut(s)	13, 68, 80, 90, 204, 334, 472
AsuC2I	CCSGG	2 cut(s)	67, 338
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	4 cut(s)	13, 90, 204, 334
BalI	TGGCCA	1 cut(s)	534
BanII	GRGCYC	3 cut(s)	300, 306, 554
Bbv12I	GWGCWC	2 cut(s)	300, 306
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	36, 617, 671
BccI	CCATC	2 cut(s)	71, 311
BcgI	CGANNNNNNTGC	1 cut(s)	648
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	2 cut(s)	67, 338
BfaI	CTAG	1 cut(s)	555
BisI	GCNGC	6 cut(s)	50, 71, 180, 465, 606, 660
BlsI	GCNGC	6 cut(s)	51, 72, 181, 466, 607, 661
Bme1390I	CCNGG	3 cut(s)	67, 338, 536
Bme18I	GGWCC	4 cut(s)	13, 90, 204, 334
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	7 cut(s)	13, 68, 80, 90, 204, 334, 472
BmiI	GGNNCC	4 cut(s)	14, 15, 92, 167
BmrFI	CCNGG	3 cut(s)	67, 338, 536
BmsI	GCATC	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	67, 338
BsaJI	CCNNGG	3 cut(s)	337, 535, 596
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 175, 560
Bse118I	RCCGGY	2 cut(s)	82, 206
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	337, 535, 596
BseLI	CCNNNNNNNGG	3 cut(s)	77, 175, 560
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	122, 224
BseXI	GCAGC	3 cut(s)	36, 617, 671
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	73, 290
BshFI	GGCC	6 cut(s)	65, 70, 82, 182, 474, 534
BsiHKAI	GWGCWC	2 cut(s)	300, 306
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	6 cut(s)	66, 83, 207, 269, 293, 337
BslFI	GGGAC	2 cut(s)	26, 208
BslI	CCNNNNNNNGG	3 cut(s)	77, 175, 560
BsmFI	GGGAC	2 cut(s)	26, 208
BsnI	GGCC	6 cut(s)	65, 70, 82, 182, 474, 534
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	300, 306, 554
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	42, 123
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	5 cut(s)	47, 71, 179, 288, 465
BspANI	GGCC	6 cut(s)	65, 70, 82, 182, 474, 534
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	73, 290
BspLI	GGNNCC	4 cut(s)	14, 15, 92, 167
BspPI	GGATC	1 cut(s)	37
BsrFI	RCCGGY	2 cut(s)	82, 206
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	2 cut(s)	82, 206
BssECI	CCNNGG	3 cut(s)	337, 535, 596
BssMI	GATC	2 cut(s)	42, 123
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	360, 452
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	84, 603
BstDEI	CTNAG	2 cut(s)	309, 678
BstDSI	CCRYGG	1 cut(s)	596
BstFNI	CGCG	2 cut(s)	73, 290
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	45, 126
BstMBI	GATC	2 cut(s)	42, 123
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 310, 461, 668
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	65, 336, 534
BstUI	CGCG	2 cut(s)	73, 290
BstV1I	GCAGC	3 cut(s)	36, 617, 671
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	6 cut(s)	65, 70, 82, 182, 474, 534
BtgI	CCRYGG	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	84, 603
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	2 cut(s)	82, 206
Cfr13I	GGNCC	7 cut(s)	13, 68, 80, 90, 204, 334, 472
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	112, 220, 241, 425
CviAII	CATG	2 cut(s)	572, 597
CviQI	GTAC	4 cut(s)	112, 220, 241, 425
DdeI	CTNAG	2 cut(s)	309, 678
DpnI	GATC	2 cut(s)	44, 125
DpnII	GATC	2 cut(s)	42, 123
EaeI	YGGCCR	2 cut(s)	180, 532
Ecl136II	GAGCTC	2 cut(s)	298, 304
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	3 cut(s)	300, 306, 554
Eco47I	GGWCC	4 cut(s)	13, 90, 204, 334
Eco53kI	GAGCTC	2 cut(s)	298, 304
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	2 cut(s)	298, 304
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	3 cut(s)	300, 306, 554
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	2 cut(s)	575, 600
FaiI	YATR	3 cut(s)	573, 598, 638
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	26, 208
FatI	CATG	2 cut(s)	571, 596
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	6 cut(s)	50, 71, 180, 465, 606, 660
FriOI	GRGCYC	3 cut(s)	300, 306, 554
Fsp4HI	GCNGC	6 cut(s)	50, 71, 180, 465, 606, 660
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	6 cut(s)	50, 71, 180, 465, 606, 660
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	6 cut(s)	65, 70, 82, 182, 474, 534
HapII	CCGG	6 cut(s)	66, 83, 207, 269, 293, 337
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	575, 600
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	171, 629, 674
HpaII	CCGG	6 cut(s)	66, 83, 207, 269, 293, 337
Hpy166II	GTNNAC	3 cut(s)	30, 90, 226
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	3 cut(s)	30, 90, 226
Hpy99I	CGWCG	2 cut(s)	34, 61
HpyAV	CCTTC	2 cut(s)	55, 185
HpyCH4III	ACNGT	2 cut(s)	360, 452
HpyCH4IV	ACGT	2 cut(s)	199, 222
HpyCH4V	TGCA	5 cut(s)	419, 455, 569, 605, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 310, 461, 668
HpyF3I	CTNAG	2 cut(s)	309, 678
HpySE526I	ACGT	2 cut(s)	199, 222
Hsp92II	CATG	2 cut(s)	575, 600
HspAI	GCGC	1 cut(s)	290
KflI	GGGWCCC	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	42, 123
LmnI	GCTCC	3 cut(s)	295, 309, 598
Lsp1109I	GCAGC	3 cut(s)	36, 617, 671
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	2 cut(s)	199, 222
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	44, 125
MboI	GATC	2 cut(s)	42, 123
MboII	GAAGA	1 cut(s)	449
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	3 cut(s)	300, 306, 554
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	534
MmeI	TCCRAC	2 cut(s)	174, 182
MnlI	CCTC	7 cut(s)	90, 100, 242, 245, 263, 318, 426
Mox20I	TGGCCA	1 cut(s)	534
MroNI	GCCGGC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	2 cut(s)	137, 651
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	6 cut(s)	66, 83, 207, 269, 293, 337
MspR9I	CCNGG	3 cut(s)	67, 338, 536
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	2 cut(s)	73, 290
MwoI	GCNNNNNNNGC	4 cut(s)	79, 310, 461, 668
NaeI	GCCGGC	1 cut(s)	84
NciI	CCSGG	2 cut(s)	67, 338
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	2 cut(s)	42, 123
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	575, 600
NlaIV	GGNNCC	4 cut(s)	14, 15, 92, 167
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	575
PaeR7I	CTCGAG	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	171, 629, 674
PkrI	GCNGC	6 cut(s)	51, 72, 181, 466, 607, 661
PpuMI	RGGWCCY	1 cut(s)	13
Psp124BI	GAGCTC	2 cut(s)	300, 306
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	14, 15, 92, 167
PspPI	GGNCC	7 cut(s)	13, 68, 80, 90, 204, 334, 472
PspPPI	RGGWCCY	1 cut(s)	13
PspXI	VCTCGAGB	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	4 cut(s)	113, 221, 242, 426
RsaNI	GTAC	4 cut(s)	112, 220, 241, 425
RseI	CAYNNNNRTG	2 cut(s)	137, 651
SacI	GAGCTC	2 cut(s)	300, 306
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	6 cut(s)	50, 71, 180, 465, 606, 660
Sau3AI	GATC	2 cut(s)	42, 123
Sau96I	GGNCC	7 cut(s)	13, 68, 80, 90, 204, 334, 472
ScrFI	CCNGG	3 cut(s)	67, 338, 536
SduI	GDGCHC	3 cut(s)	300, 306, 554
SfaNI	GCATC	1 cut(s)	646
Sfr274I	CTCGAG	1 cut(s)	299
SinI	GGWCC	4 cut(s)	13, 90, 204, 334
SlaI	CTCGAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	137, 651
SmlI	CTYRAG	2 cut(s)	236, 299
SmoI	CTYRAG	2 cut(s)	236, 299
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	5 cut(s)	47, 71, 179, 288, 465
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	2 cut(s)	300, 306
StyD4I	CCNGG	3 cut(s)	65, 336, 534
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	360, 452
TaiI	ACGT	2 cut(s)	202, 225
TaqI	TCGA	6 cut(s)	29, 249, 261, 300, 315, 627
TasI	AATT	1 cut(s)	491
TatI	WGTACW	2 cut(s)	111, 424
TauI	GCSGC	3 cut(s)	73, 182, 467
TfiI	GAWTC	3 cut(s)	171, 629, 674
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	49, 605, 659
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	4 cut(s)	13, 90, 204, 334
XceI	RCATGY	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.