Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011875

Physical Location & Seq

Genomic Coordinates Reverse (-)

44219238 .. 44221864

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G541400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGGTTGGGACCCGAACACGAAGTCGACGCTAACCCAGATCCCACTGTTGACGACGAAGGCCGGGCCGAGAGATGGGGCGGCATGGACGCAGAGGCTGAAGGAGGAGTACAAGGCTTTGATCGCCTACACCCAGATGAACAAGTCCAACGATAACGATTGGTTCCGAATCTCCGCGGACAATCCCGAGGGGACACGTTGGACCGGCAAGTGCTGGTACGTCCACAACCTCCTCAAGTACGAGTTCGATCTCCAGTTCGATATCCCTGTCACCTACCCTGCTACCGCACCTGAGCTCGAGCTCCCTGAGCTCGATGGCAAGACCCAAAAGATGTATAGAGGGGGGAAGATCTGCTTGACAGTGCATTTCAAGCCGCTTTGGGCCAAGAACTGTCCGAGGTTTGGTATAGCACATGCACTATGTTTGGGTCTTGCACCATGGCTTGCAGCAGAGATTCCCATTCTTGTGGATTCTGGTATGGTTAAGCACAAAGATGATGCTGCATCATCAGCTGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071568 GO:0071569 GO:0071704 GO:0140096 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFC1

Protein Analysis

175

Amino Acids

19.61

Weight (kDa)

6.42

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27530
fragaria_vesca	FvH4_5g33720 FvH4_5g33720
malus_domestica	MD05G1007500.v1.1 MD08G1209200.v1.1 MD15G1393200.v1.1
prunus_persica	Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1 Prupe.1G541400_v2.0.a1
pyrus_communis	pycom05g10270 pycom08g18060 pycom15g35350
rosa_chinensis	RchiOBHm_Chr7g0232851
rosa_laevigata	RLG00000001313
rosa_multiflora	Rmu_ssc0000018.1_g000017
rosa_roxburghii	Rroxscaffold_3G00227850
rosa_rugosa	Rorug07G0276400
rosa_samantha	Rh7CG450300
rosa_wichuraiana	Rw7G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	1 cut(s)	179
AciI	CCGC	5 cut(s)	83, 177, 179, 288, 377
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	3 cut(s)	113, 221, 242
AfiI	CCNNNNNNNGG	2 cut(s)	77, 404
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	4 cut(s)	298, 304, 313, 515
AluI	AGCT	4 cut(s)	298, 304, 313, 515
Alw21I	GWGCWC	3 cut(s)	300, 306, 315
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	100
Ama87I	CYCGRG	2 cut(s)	188, 299
AoxI	GGCC	3 cut(s)	63, 68, 384
ApeKI	GCWGC	2 cut(s)	449, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	4 cut(s)	13, 68, 204, 384
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	2 cut(s)	188, 299
AvaII	GGWCC	2 cut(s)	13, 204
BanII	GRGCYC	3 cut(s)	300, 306, 315
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
Bbv12I	GWGCWC	3 cut(s)	300, 306, 315
BbvI	GCAGC	2 cut(s)	461, 490
BccI	CCATC	2 cut(s)	71, 311
BcnI	CCSGG	1 cut(s)	67
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	4 cut(s)	84, 377, 450, 504
BlsI	GCNGC	4 cut(s)	85, 378, 451, 505
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	13, 204
BmeT110I	CYCGRG	2 cut(s)	188, 299
BmgT120I	GGNCC	4 cut(s)	13, 68, 204, 384
BmiI	GGNNCC	3 cut(s)	14, 15, 167
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	490, 515
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	2 cut(s)	294, 309
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	4 cut(s)	177, 189, 398, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 404
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	177, 189, 398, 440
BseLI	CCNNNNNNNGG	2 cut(s)	77, 404
BseMII	CTCAG	2 cut(s)	285, 300
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	122, 224
BseXI	GCAGC	2 cut(s)	461, 490
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	65, 70, 386
BsiHKAI	GWGCWC	3 cut(s)	300, 306, 315
BsiHKCI	CYCGRG	2 cut(s)	188, 299
BsiSI	CCGG	2 cut(s)	66, 207
BslFI	GGGAC	2 cut(s)	26, 208
BslI	CCNNNNNNNGG	2 cut(s)	77, 404
BsmFI	GGGAC	2 cut(s)	26, 208
BsnI	GGCC	3 cut(s)	65, 70, 386
BsoBI	CYCGRG	2 cut(s)	188, 299
Bsp1286I	GDGCHC	3 cut(s)	300, 306, 315
Bsp143I	GATC	4 cut(s)	42, 123, 250, 351
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	5 cut(s)	83, 177, 179, 288, 377
BspANI	GGCC	3 cut(s)	65, 70, 386
BspCNI	CTCAG	2 cut(s)	286, 301
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	14, 15, 167
BspPI	GGATC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	4 cut(s)	177, 189, 398, 440
BssMI	GATC	4 cut(s)	42, 123, 250, 351
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	51, 364, 395
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	294, 309, 522
BstDSI	CCRYGG	2 cut(s)	177, 440
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	45, 126, 253, 354
BstMBI	GATC	4 cut(s)	42, 123, 250, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 310, 373, 512
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	461, 490
BstX2I	RGATCY	2 cut(s)	42, 351
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	2 cut(s)	42, 351
BsuRI	GGCC	3 cut(s)	65, 70, 386
BtgI	CCRYGG	2 cut(s)	177, 440
BtsIMutI	CAGTG	2 cut(s)	47, 369
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	13, 68, 204, 384
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	2 cut(s)	40, 100
Csp6I	GTAC	3 cut(s)	112, 220, 241
CviAII	CATG	3 cut(s)	87, 416, 441
CviQI	GTAC	3 cut(s)	112, 220, 241
DdeI	CTNAG	3 cut(s)	294, 309, 522
DpnI	GATC	4 cut(s)	44, 125, 252, 353
DpnII	GATC	4 cut(s)	42, 123, 250, 351
Ecl136II	GAGCTC	3 cut(s)	298, 304, 313
Eco130I	CCWWGG	1 cut(s)	440
Eco24I	GRGCYC	3 cut(s)	300, 306, 315
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	13, 204
Eco53kI	GAGCTC	3 cut(s)	298, 304, 313
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	2 cut(s)	188, 299
EcoICRI	GAGCTC	3 cut(s)	298, 304, 313
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	3 cut(s)	300, 306, 315
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	3 cut(s)	90, 419, 444
FaiI	YATR	7 cut(s)	88, 339, 410, 417, 424, 442, 482
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	2 cut(s)	26, 208
FatI	CATG	3 cut(s)	86, 415, 440
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	84, 377, 450, 504
FriOI	GRGCYC	3 cut(s)	300, 306, 315
Fsp4HI	GCNGC	4 cut(s)	84, 377, 450, 504
GluI	GCNGC	4 cut(s)	84, 377, 450, 504
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	3 cut(s)	65, 70, 386
HapII	CCGG	2 cut(s)	66, 207
HgaI	GACGC	2 cut(s)	40, 100
Hin1II	CATG	3 cut(s)	90, 419, 444
HincII	GTYRAC	2 cut(s)	30, 54
HindII	GTYRAC	2 cut(s)	30, 54
HinfI	GANTC	4 cut(s)	171, 457, 473, 518
HpaII	CCGG	2 cut(s)	66, 207
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	30, 54, 226
Hpy188I	TCNGA	2 cut(s)	170, 399
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	3 cut(s)	30, 54, 226
Hpy99I	CGWCG	2 cut(s)	34, 61
HpyAV	CCTTC	2 cut(s)	55, 97
HpyCH4III	ACNGT	3 cut(s)	51, 364, 395
HpyCH4IV	ACGT	2 cut(s)	199, 222
HpyCH4V	TGCA	5 cut(s)	367, 419, 437, 449, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 310, 373, 512
HpyF3I	CTNAG	3 cut(s)	294, 309, 522
HpySE526I	ACGT	2 cut(s)	199, 222
Hsp92II	CATG	3 cut(s)	90, 419, 444
KflI	GGGWCCC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	42, 123, 250, 351
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	2 cut(s)	461, 490
LweI	GCATC	2 cut(s)	490, 515
MaeII	ACGT	2 cut(s)	199, 222
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	44, 125, 252, 353
MboI	GATC	4 cut(s)	42, 123, 250, 351
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	2 cut(s)	42, 351
MhlI	GDGCHC	3 cut(s)	300, 306, 315
MmeI	TCCRAC	2 cut(s)	174, 182
MnlI	CCTC	7 cut(s)	90, 100, 184, 242, 245, 335, 393
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	3 cut(s)	137, 467, 495
MspA1I	CMGCKG	2 cut(s)	179, 515
MspI	CCGG	2 cut(s)	66, 207
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	125, 310, 373, 512
NciI	CCSGG	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	4 cut(s)	42, 123, 250, 351
NlaIII	CATG	3 cut(s)	90, 419, 444
NlaIV	GGNNCC	3 cut(s)	14, 15, 167
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	171, 457, 473, 518
PkrI	GCNGC	4 cut(s)	85, 378, 451, 505
PpuMI	RGGWCCY	1 cut(s)	13
Psp124BI	GAGCTC	3 cut(s)	300, 306, 315
Psp5II	RGGWCCY	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	14, 15, 167
PspPI	GGNCC	4 cut(s)	13, 68, 204, 384
PspPPI	RGGWCCY	1 cut(s)	13
PspXI	VCTCGAGB	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	42, 351
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	113, 221, 242
RsaNI	GTAC	3 cut(s)	112, 220, 241
RseI	CAYNNNNRTG	3 cut(s)	137, 467, 495
SacI	GAGCTC	3 cut(s)	300, 306, 315
SacII	CCGCGG	1 cut(s)	180
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	84, 377, 450, 504
Sau3AI	GATC	4 cut(s)	42, 123, 250, 351
Sau96I	GGNCC	4 cut(s)	13, 68, 204, 384
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	3 cut(s)	300, 306, 315
SfaNI	GCATC	2 cut(s)	490, 515
Sfr274I	CTCGAG	1 cut(s)	299
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	13, 204
SlaI	CTCGAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	3 cut(s)	137, 467, 495
SmlI	CTYRAG	2 cut(s)	236, 299
SmoI	CTYRAG	2 cut(s)	236, 299
SsiI	CCGC	5 cut(s)	83, 177, 179, 288, 377
SstI	GAGCTC	3 cut(s)	300, 306, 315
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	51, 364, 395
TaiI	ACGT	2 cut(s)	202, 225
TaqI	TCGA	5 cut(s)	29, 249, 261, 300, 315
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	2 cut(s)	86, 379
TfiI	GAWTC	4 cut(s)	171, 457, 473, 518
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	54, 369
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	449, 503
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	54, 369
VpaK11BI	GGWCC	2 cut(s)	13, 204
XceI	RCATGY	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.