Rorug07G0276400

E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
26435003 .. 26449334
14332 bp
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UTR
Exon/CDS
Intron
Rorug07G0276400.1

Sequence Viewer

Length: 234 bp
ATGGGTATAGAAGGATGCTGTTCACATAGATATGGTGCACAAGGCGTTGTTACTGCTATGATGTACTTTACCTTGTTACAACCCTGCACGCGCATCCCAGCTATCCTCTACTATAAGAAAATGTTACTGATGGCCTATATAATTGAGAATTCCATTTCAAGGATCATACAGCCTCTGATCGCTCTATTTTTAACTTCTGTATTCAGTCTGTTTCTCCAATTCCAGTATAAGTAA

Protein Analysis

77

Amino Acids

8.86

Weight (kDa)

9.18

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 40
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 1 cut(s) 132
ApaLI GTGCAC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 124
BmsI GCATC 2 cut(s) 5, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 20, 93
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 223
BseSI GKGCMC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 159
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 162, 177
BspANI GGCC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 91
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 223
BssMI GATC 2 cut(s) 162, 177
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 20, 93
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 165, 180
BstMBI GATC 2 cut(s) 162, 177
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 91
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 20, 93
Cac8I GCNNGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 3 cut(s) 101, 134, 172
CviKI_1 RGCY 3 cut(s) 101, 134, 172
CviQI GTAC 1 cut(s) 64
DpnI GATC 2 cut(s) 164, 179
DpnII GATC 2 cut(s) 162, 177
EcoRI GAATTC 1 cut(s) 148
FaiI YATR 9 cut(s) 8, 27, 33, 59, 114, 138, 140, 167, 228
FokI GGATG 2 cut(s) 27, 80
GlaI GCGC 1 cut(s) 92
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 23, 38
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 2 cut(s) 23, 38
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 38, 87
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 162, 177
LpnPI CCDG 2 cut(s) 97, 111
LweI GCATC 2 cut(s) 5, 102
MaeIII GTNAC 3 cut(s) 49, 75, 123
MalI GATC 2 cut(s) 164, 179
MboI GATC 2 cut(s) 162, 177
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 141, 148, 218
MnlI CCTC 2 cut(s) 116, 183
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 30
MvnI CGCG 1 cut(s) 91
NdeII GATC 2 cut(s) 162, 177
PspFI CCCAGC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 191
Sau3AI GATC 2 cut(s) 162, 177
SduI GDGCHC 1 cut(s) 40
SetI ASST 2 cut(s) 74, 103
SfaNI GCATC 2 cut(s) 5, 102
SgeI CNNG 7 cut(s) 53, 85, 96, 100, 102, 110, 171
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 141, 148, 218
TasI AATT 3 cut(s) 141, 148, 218
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
VneI GTGCAC 1 cut(s) 36
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.