Rroxscaffold_3G00227810

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000242
Physical Location & Seq
Forward (+)
12089662 .. 12090054
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227810.1

Sequence Viewer

Length: 393 bp
ATGTACCCAACATACACATGCTCACCACCAATGTCGGGTAACACCCGGGCATACCTCACTCTCAACAGCTTTGAGGCAGGCGGTGACGGAGGAGGACCATCCGAATGTGATGGCAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCTACCGGATGGTACAATGGTGGATCAAGATGCCTTAACAAAATCAAGATTAACGGTAATGGGCGCAATGTGGTGGCCATGGTGGTGGATGAGTGTGACTCGACTGAGGGATGTGATGCGGACCATGATTATCAGCCTCCTTGTCCCAACAATATTGTTGATGCCTCCAAGGCCGTCTGGAAAGCGTTGGGTGTATCTGAGGACAATTGGGGCGGCTTGGATATCACATGGTCCGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.86

Weight (kDa)

4.34

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 129 1e-53 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 269, 363
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 225
AfaI GTAC 3 cut(s) 5, 119, 164
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AlwI GGATC 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 2 cut(s) 225, 321
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 95, 271, 381
AsuC2I CCSGG 2 cut(s) 46, 47
AsuHPI GGTGA 2 cut(s) 15, 95
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 3 cut(s) 95, 271, 381
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BalI TGGCCA 1 cut(s) 227
BccI CCATC 3 cut(s) 104, 106, 153
BceAI ACGGC 1 cut(s) 308
BcnI CCSGG 2 cut(s) 46, 47
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 46, 47
Bme18I GGWCC 3 cut(s) 95, 271, 381
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 95, 271, 381
BmrFI CCNGG 2 cut(s) 46, 47
BmsI GCATC 3 cut(s) 170, 256, 301
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 2 cut(s) 46, 47
BsaJI CCNNGG 3 cut(s) 45, 228, 318
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 3 cut(s) 45, 228, 318
BseGI GGATG 4 cut(s) 98, 164, 244, 266
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 246, 339
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 227, 323
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 46, 156
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 2 cut(s) 227, 323
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 3 cut(s) 81, 269, 363
BspANI GGCC 2 cut(s) 227, 323
BspCNI CTCAG 2 cut(s) 247, 340
BspPI GGATC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 45, 228, 318
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 228, 318
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 255, 348, 390
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 4 cut(s) 98, 164, 244, 266
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 176
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 44, 45
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 227, 323
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 4 cut(s) 98, 164, 244, 266
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 95, 271, 381
Cfr9I CCCGGG 1 cut(s) 45
Csp6I GTAC 3 cut(s) 4, 118, 163
CviAII CATG 4 cut(s) 18, 229, 275, 378
CviJI RGCY 5 cut(s) 69, 227, 286, 323, 366
CviKI_1 RGCY 5 cut(s) 69, 227, 286, 323, 366
CviQI GTAC 3 cut(s) 4, 118, 163
DdeI CTNAG 3 cut(s) 255, 348, 390
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 228, 318
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 95, 271, 381
Eco88I CYCGRG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 228, 318
ErhI CCWWGG 2 cut(s) 228, 318
FaeI CATG 4 cut(s) 21, 232, 278, 381
FaiI YATR 6 cut(s) 13, 19, 52, 230, 276, 379
FaqI GGGAC 1 cut(s) 279
FatI CATG 4 cut(s) 17, 228, 274, 377
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 4 cut(s) 85, 171, 251, 273
Fsp4HI GCNGC 1 cut(s) 364
GlaI GCGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 364
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 227, 323
HapII CCGG 2 cut(s) 46, 156
HhaI GCGC 1 cut(s) 216
Hin1II CATG 4 cut(s) 21, 232, 278, 381
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 2 cut(s) 248, 386
HpaII CCGG 2 cut(s) 46, 156
HphI GGTGA 2 cut(s) 15, 95
Hpy188I TCNGA 3 cut(s) 103, 349, 385
Hpy188III TCNNGA 3 cut(s) 177, 196, 328
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 255, 348, 390
Hsp92II CATG 4 cut(s) 21, 232, 278, 381
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 59, 63, 150, 169, 313
LweI GCATC 3 cut(s) 170, 256, 301
MaeIII GTNAC 3 cut(s) 38, 83, 245
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MfeI CAATTG 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 1 cut(s) 355
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 242, 380
MnlI CCTC 8 cut(s) 65, 67, 83, 86, 250, 297, 325, 343
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 186, 201
MslI CAYNNNNRTG 3 cut(s) 16, 103, 233
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 2 cut(s) 46, 156
MspR9I CCNGG 2 cut(s) 46, 47
MunI CAATTG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 320
NciI CCSGG 2 cut(s) 46, 47
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 173
NlaIII CATG 4 cut(s) 21, 232, 278, 381
NmuCI GTSAC 2 cut(s) 83, 245
NspI RCATGY 1 cut(s) 21
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 2 cut(s) 242, 380
PpsI GAGTC 2 cut(s) 242, 380
PspPI GGNCC 3 cut(s) 95, 271, 381
RsaI GTAC 3 cut(s) 5, 119, 164
RsaNI GTAC 3 cut(s) 4, 118, 163
RseI CAYNNNNRTG 3 cut(s) 16, 103, 233
SaqAI TTAA 2 cut(s) 186, 201
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 3 cut(s) 95, 271, 381
SchI GAGTC 2 cut(s) 242, 380
ScrFI CCNGG 2 cut(s) 46, 47
SetI ASST 2 cut(s) 57, 71
SfaNI GCATC 3 cut(s) 170, 256, 301
SinI GGWCC 3 cut(s) 95, 271, 381
SmaI CCCGGG 1 cut(s) 47
SmiMI CAYNNNNRTG 3 cut(s) 16, 103, 233
Sse9I AATT 1 cut(s) 355
SsiI CCGC 3 cut(s) 81, 269, 363
SspI AATATT 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 44, 45
StyI CCWWGG 2 cut(s) 228, 318
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 355
TauI GCSGC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 186, 201
Tru9I TTAA 2 cut(s) 186, 201
TseFI GTSAC 2 cut(s) 83, 245
Tsp45I GTSAC 2 cut(s) 83, 245
TspGWI ACGGA 1 cut(s) 102
TspMI CCCGGG 1 cut(s) 45
VpaK11BI GGWCC 3 cut(s) 95, 271, 381
XceI RCATGY 1 cut(s) 21
XmaI CCCGGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.