Rmu_sc0026161.1_g000001

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026161.1
OG0000242
Physical Location & Seq
Forward (+)
1 .. 1209
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026161.1_g000001.1.cds

Sequence Viewer

Length: 214 bp
gtgccataacaacattaaaatcactgctaatggtcgcagtgtggtggccatggtggtggatgaatgtgactctaccagaggatgtgaagcagaccatgactacctccctccttgtgctaacaacattattcttgcctccaaggctgtttgggaaggcttgcatgtgtctaaagaaaactggggcggcttagatatcacatggaacgacgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.64

Weight (kDa)

4.8

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 208
AoxI GGCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 141
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 49, 139
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 49, 139
BseGI GGATG 2 cut(s) 65, 87
BseNI ACTGG 1 cut(s) 183
BshFI GGCC 1 cut(s) 48
BsnI GGCC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 49, 139
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 49, 139
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 65, 87
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 2 cut(s) 65, 87
BtsI GCAGTG 2 cut(s) 22, 44
BtsIMutI CAGTG 2 cut(s) 22, 44
Cac8I GCNNGC 1 cut(s) 159
CviAII CATG 4 cut(s) 50, 96, 162, 199
CviJI RGCY 4 cut(s) 48, 144, 157, 187
CviKI_1 RGCY 4 cut(s) 48, 144, 157, 187
DdeI CTNAG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 49, 139
Eco32I GATATC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 49, 139
ErhI CCWWGG 2 cut(s) 49, 139
FaeI CATG 4 cut(s) 53, 99, 165, 202
FaiI YATR 5 cut(s) 7, 51, 97, 163, 200
FatI CATG 4 cut(s) 49, 95, 161, 198
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 72, 94
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 4 cut(s) 53, 99, 165, 202
HinfI GANTC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 4 cut(s) 53, 99, 165, 202
LpnPI CCDG 2 cut(s) 89, 164
MaeIII GTNAC 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 4 cut(s) 72, 114, 118, 146
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 49
NlaIII CATG 4 cut(s) 53, 99, 165, 202
NmuCI GTSAC 1 cut(s) 66
NspI RCATGY 1 cut(s) 165
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 16
SatI GCNGC 1 cut(s) 185
SchI GAGTC 1 cut(s) 63
SetI ASST 1 cut(s) 106
SgeI CNNG 9 cut(s) 62, 88, 108, 124, 144, 152, 170, 174, 191
SmiMI CAYNNNNRTG 1 cut(s) 54
SsiI CCGC 1 cut(s) 184
StyI CCWWGG 2 cut(s) 49, 139
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 16
Tru9I TTAA 1 cut(s) 16
TscAI CASTG 2 cut(s) 29, 44
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 2 cut(s) 29, 44
XceI RCATGY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.