Prupe.2G166800_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Forward (+)
21557573 .. 21558241
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G166800.1

Sequence Viewer

Length: 573 bp
ATGAAGAGCTTAGCAATTTTCTCAAAAGGCTCCATTGGCCTACTGGTAATTCTCCTCGCAACAATTTGCTTGGTGACTGAAGCTCAGCAATGTCGTCCAAGCGGCAGAATCAGAGGAAGGAAGGCCCCTGCTGGACAATGCAACCAGGAGAATGACTCTGACTGCTGTGTCGCCGGCAAAATGTACCCGACCTACACTTGTTCACCGCCATTGTCCGAGAGCACCAAGGCCTACCTCACTCTTAACAGTTTCGAGGCAGGTGGTGATGGTGGCGGTCCATCAGAATGTGACAACAAATACCACAACGACAACACACCAGTTGTGGCATTGTCCACTGGATGGTACAACAATGGAGGAAGGTGCCATAACAACATCACAATTAGCGCTAATGGGCGCAGTGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATGCTGACCATGACTACCAACCTCCTTGTCCTAACAACATTGTTGATGCTTCAAAGGCTGTCTGGAAAGCCTTGGGTGTGCCTGAGGACAACTGGGGTGGCTTAGATATCACTTGGTCCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.18

Weight (kDa)

4.74

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
AasI GACNNNNNNGTC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 360
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 3 cut(s) 102, 206, 273
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 185, 344
AfeI AGCGCT 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 1 cut(s) 498
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 9, 83
AluI AGCT 2 cut(s) 9, 83
Alw21I GWGCWC 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 4 cut(s) 37, 123, 228, 405
AspLEI GCGC 2 cut(s) 386, 396
AspS9I GGNCC 3 cut(s) 124, 275, 561
AsuHPI GGTGA 3 cut(s) 85, 195, 275
AvaII GGWCC 2 cut(s) 275, 561
AxyI CCTNAGG 1 cut(s) 528
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 3 cut(s) 260, 286, 333
BciT130I CCWGG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 1 cut(s) 103
BlpI GCTNAGC 2 cut(s) 10, 84
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 275, 561
BmgT120I GGNCC 3 cut(s) 124, 275, 561
BmiI GGNNCC 3 cut(s) 31, 126, 362
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 3 cut(s) 436, 481, 556
BmuI ACTGGG 1 cut(s) 547
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 413, 445
Bpu1102I GCTNAGC 2 cut(s) 10, 84
BsaJI CCNNGG 3 cut(s) 225, 408, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 4 cut(s) 48, 317, 340, 542
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 225, 408, 516
BseGI GGATG 3 cut(s) 344, 424, 446
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 3 cut(s) 98, 426, 519
BseNI ACTGG 4 cut(s) 48, 317, 340, 542
BseRI GAGGAG 1 cut(s) 44
BshFI GGCC 4 cut(s) 39, 125, 230, 407
BshNI GGYRCC 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 4 cut(s) 39, 125, 230, 407
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1720I GCTNAGC 2 cut(s) 10, 84
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 3 cut(s) 102, 206, 273
BspANI GGCC 4 cut(s) 39, 125, 230, 407
BspCNI CTCAG 3 cut(s) 97, 427, 520
BspLI GGNNCC 3 cut(s) 31, 126, 362
BspMI ACCTGC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 4 cut(s) 48, 317, 340, 542
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 225, 408, 516
BssT1I CCWWGG 3 cut(s) 225, 408, 516
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 6 cut(s) 10, 84, 435, 528, 547, 570
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 344, 424, 446
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 2 cut(s) 386, 396
BstMWI GCNNNNNNNGC 2 cut(s) 36, 500
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 4 cut(s) 39, 125, 230, 407
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 3 cut(s) 344, 424, 446
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 333, 403
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 2 cut(s) 386, 396
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 124, 275, 561
Csp6I GTAC 2 cut(s) 184, 343
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 2 cut(s) 409, 455
CviQI GTAC 2 cut(s) 184, 343
DdeI CTNAG 6 cut(s) 10, 84, 435, 528, 547, 570
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 405
Eco130I CCWWGG 3 cut(s) 225, 408, 516
Eco147I AGGCCT 1 cut(s) 230
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 275, 561
Eco47III AGCGCT 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 3 cut(s) 225, 408, 516
ErhI CCWWGG 3 cut(s) 225, 408, 516
FaeI CATG 2 cut(s) 412, 458
FaiI YATR 3 cut(s) 366, 410, 456
FatI CATG 2 cut(s) 408, 454
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 3 cut(s) 351, 431, 453
Fsp4HI GCNGC 1 cut(s) 103
GlaI GCGC 2 cut(s) 385, 395
GluI GCNGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 4 cut(s) 39, 125, 230, 407
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 386, 396
Hin1II CATG 2 cut(s) 412, 458
Hin6I GCGC 2 cut(s) 384, 394
HinP1I GCGC 2 cut(s) 384, 394
HinfI GANTC 3 cut(s) 108, 155, 428
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 85, 195, 275
Hpy166II GTNNAC 2 cut(s) 203, 333
Hpy188I TCNGA 5 cut(s) 113, 160, 217, 283, 565
Hpy188III TCNNGA 1 cut(s) 508
Hpy8I GTNNAC 2 cut(s) 203, 333
HpyAV CCTTC 3 cut(s) 111, 115, 351
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 500
HpyF3I CTNAG 6 cut(s) 10, 84, 435, 528, 547, 570
Hsp92II CATG 2 cut(s) 412, 458
HspAI GCGC 2 cut(s) 384, 394
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 35
LweI GCATC 3 cut(s) 436, 481, 556
MaeIII GTNAC 3 cut(s) 73, 287, 425
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 4 cut(s) 15, 48, 63, 378
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 2 cut(s) 149, 422
MnlI CCTC 8 cut(s) 65, 107, 245, 247, 347, 430, 477, 523
Mox20I TGGCCA 1 cut(s) 407
MroNI GCCGGC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 407
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 283, 413
Msp20I TGGCCA 1 cut(s) 407
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 36, 500
NaeI GCCGGC 1 cut(s) 175
NcoI CCATGG 1 cut(s) 408
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 412, 458
NlaIV GGNNCC 3 cut(s) 31, 126, 362
NmuCI GTSAC 3 cut(s) 73, 287, 425
PaqCI CACCTGC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 2 cut(s) 149, 422
PpsI GAGTC 2 cut(s) 149, 422
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 31, 126, 362
PspPI GGNCC 3 cut(s) 124, 275, 561
RsaI GTAC 2 cut(s) 185, 344
RsaNI GTAC 2 cut(s) 184, 343
RseI CAYNNNNRTG 2 cut(s) 283, 413
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 124, 275, 561
SchI GAGTC 2 cut(s) 149, 422
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 11, 85, 194, 237, 262, 362, 469
SfaNI GCATC 3 cut(s) 436, 481, 556
SinI GGWCC 2 cut(s) 275, 561
SmiMI CAYNNNNRTG 2 cut(s) 283, 413
Sse9I AATT 4 cut(s) 15, 48, 63, 378
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 3 cut(s) 102, 206, 273
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 3 cut(s) 225, 408, 516
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 252
TasI AATT 4 cut(s) 15, 48, 63, 378
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 340, 403
TseFI GTSAC 3 cut(s) 73, 287, 425
Tsp45I GTSAC 3 cut(s) 73, 287, 425
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 340, 403
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 275, 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.