MD01G1056100.v1.1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000242
Physical Location & Seq
Forward (+)
16138411 .. 16138800
390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1056100.v1.1.491

Sequence Viewer

Length: 390 bp
ATGTACACAACCTACACATGTTCACCACCACTGTCCGGCAGAACCAAGGCCTACCTCACTCTTAACAGTTTCGAGAAAAATGGTGATGGAGGCGGTTCATCAGAATGTGACAACAAGTACCACAATGATAACACACCAGTTGTTGCATTGTCGACTGGATGGTACAACCATGGAGGAAGGTGCCGTAACATCACCATTAGTGGTAACGGGCGCAGTGTGGTGGCTATGGTGGTGGATGAGTGTGACTCTACTGAGGAATGTGATGCAGATCATGACTACCAACCTCCTTGTCCAAACAACATCGTTGACGCCTCAAAAGCTGTCTGGAAAGCCTTGGGTGTACCCAAGGACAACTGGGGAGGATTAGATATTACATGGTCCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.97

Weight (kDa)

4.69

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 129 2e-51 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 152
AciI CCGC 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 4 cut(s) 5, 119, 164, 342
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 17
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AoxI GGCC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 3 cut(s) 15, 95, 184
AvaII GGWCC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 180
BccI CCATC 2 cut(s) 80, 153
BceAI ACGGC 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 253, 373
BmuI ACTGGG 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 45, 169, 333, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 3 cut(s) 137, 160, 359
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 45, 169, 333, 345
BseGI GGATG 2 cut(s) 164, 241
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 137, 160, 359
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 3 cut(s) 137, 160, 359
BssECI CCNNGG 4 cut(s) 45, 169, 333, 345
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 4 cut(s) 45, 169, 333, 345
Bst4CI ACNGT 2 cut(s) 33, 68
BstACI GRCGYC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 252, 387
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 164, 241
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 21
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 164, 241
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 29, 220
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 317
Csp6I GTAC 4 cut(s) 4, 118, 163, 341
CviAII CATG 4 cut(s) 18, 170, 272, 375
CviJI RGCY 4 cut(s) 50, 224, 320, 332
CviKI_1 RGCY 4 cut(s) 50, 224, 320, 332
CviQI GTAC 4 cut(s) 4, 118, 163, 341
DdeI CTNAG 2 cut(s) 252, 387
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco130I CCWWGG 4 cut(s) 45, 169, 333, 345
Eco147I AGGCCT 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 378
EcoT14I CCWWGG 4 cut(s) 45, 169, 333, 345
ErhI CCWWGG 4 cut(s) 45, 169, 333, 345
FaeI CATG 4 cut(s) 21, 173, 275, 378
FaiI YATR 5 cut(s) 19, 171, 227, 273, 376
FatI CATG 4 cut(s) 17, 169, 271, 374
FblI GTMKAC 1 cut(s) 152
FokI GGATG 2 cut(s) 171, 248
GlaI GCGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 4 cut(s) 21, 173, 275, 378
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 2 cut(s) 153, 307
HindII GTYRAC 2 cut(s) 153, 307
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 36
HphI GGTGA 3 cut(s) 15, 95, 184
Hpy166II GTNNAC 5 cut(s) 6, 23, 153, 307, 341
Hpy188I TCNGA 2 cut(s) 103, 382
Hpy188III TCNNGA 3 cut(s) 73, 272, 325
Hpy8I GTNNAC 5 cut(s) 6, 23, 153, 307, 341
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 2 cut(s) 33, 68
HpyCH4V TGCA 2 cut(s) 146, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 252, 387
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 4 cut(s) 21, 173, 275, 378
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 49, 141, 150, 310, 340
LweI GCATC 2 cut(s) 253, 373
MaeIII GTNAC 4 cut(s) 107, 185, 203, 242
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 7 cut(s) 65, 83, 167, 247, 294, 322, 353
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 169
NdeII GATC 1 cut(s) 268
NlaIII CATG 4 cut(s) 21, 173, 275, 378
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 107, 242
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 271
PceI AGGCCT 1 cut(s) 50
PciI ACATGT 1 cut(s) 17
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PscI ACATGT 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 378
RsaI GTAC 4 cut(s) 5, 119, 164, 342
RsaNI GTAC 4 cut(s) 4, 118, 163, 341
RseI CAYNNNNRTG 1 cut(s) 103
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 239
SetI ASST 5 cut(s) 14, 57, 182, 286, 322
SfaNI GCATC 2 cut(s) 253, 373
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 103
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 1 cut(s) 93
StuI AGGCCT 1 cut(s) 50
StyI CCWWGG 4 cut(s) 45, 169, 333, 345
TaaI ACNGT 2 cut(s) 33, 68
TaqI TCGA 2 cut(s) 72, 152
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 36, 220
TseFI GTSAC 2 cut(s) 107, 242
Tsp45I GTSAC 2 cut(s) 107, 242
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 36, 220
VpaK11BI GGWCC 1 cut(s) 378
XceI RCATGY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.