FvH4_7g13931

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000242
Physical Location & Seq
Forward (+)
12404982 .. 12406171
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13931.t1

Sequence Viewer

Length: 519 bp
ATGCTTTACAGAAAACTCTTTAGTGATGCTCAGCAATGCCGTCCAAGCGGAAGAATTAGAGGCAAGAAGCCTCCTCCTGGACAATGTAACCAGGAGGATGACTCAGACTGTTGTAAGGCCGGAAAGATGTACCCAACATACACTTGCTCACCACCAATGTCTGGCAACACCCAAGCATACCTCACTCTCAACAGCTTTGAGGCAGGTGGTGACGGGGGAGGTCCATCAGAATGTGACGGCAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCCACCGGATGGTACAACAGTGGATCAAGGTGCCTTAAGAACATCAGAATTAATGGTAACGGGCAGAGTGTGGTGGCCATGGTGGTGGATGAATGTGACTCTACAGAAGGTTGTGATGCAGACCATGATTACCAGCCTCCTTGTCCTAACAACATAGTTGATGCATCCAAGGCTGTATGGAAAGCCTTGGGTGTGTCTAAAGACAATTGGGGTGGCTTAGATATCACATGGTCCGACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.51

Weight (kDa)

4.93

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 9 - 172 2.4e-67 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 306
AccB7I CCANNNNNTGG 2 cut(s) 161, 285
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 3 cut(s) 131, 245, 290
AfiI CCNNNNNNNGG 3 cut(s) 77, 161, 285
AflII CTTAAG 1 cut(s) 311
AjnI CCWGG 2 cut(s) 76, 90
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
AlwI GGATC 1 cut(s) 307
AoxI GGCC 2 cut(s) 117, 351
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 221, 507
AsuHPI GGTGA 2 cut(s) 141, 221
AvaII GGWCC 2 cut(s) 221, 507
BaeI ACNNNNGTAYC 2 cut(s) 280, 313
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 306
BccI CCATC 2 cut(s) 232, 279
BceAI ACGGC 2 cut(s) 24, 253
BciT130I CCWGG 2 cut(s) 78, 92
BfaI CTAG 1 cut(s) 517
BfmI CTRYAG 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 78, 92
Bme18I GGWCC 2 cut(s) 221, 507
BmgT120I GGNCC 2 cut(s) 221, 507
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 2 cut(s) 78, 92
BmsI GCATC 4 cut(s) 16, 382, 427, 449
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 354, 444, 462
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 161, 285
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 2 cut(s) 78, 92
BseDI CCNNGG 3 cut(s) 354, 444, 462
BseGI GGATG 4 cut(s) 103, 290, 370, 440
BseLI CCNNNNNNNGG 3 cut(s) 77, 161, 285
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 44, 117
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 119, 353
BshNI GGYRCC 1 cut(s) 306
BsiSI CCGG 2 cut(s) 120, 282
BslI CCNNNNNNNGG 3 cut(s) 77, 161, 285
BsnI GGCC 2 cut(s) 119, 353
Bsp143I GATC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 48
BspANI GGCC 2 cut(s) 119, 353
BspCNI CTCAG 2 cut(s) 43, 116
BspLI GGNNCC 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 354, 444, 462
BssMI GATC 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 3 cut(s) 354, 444, 462
Bst2UI CCWGG 2 cut(s) 78, 92
Bst4CI ACNGT 2 cut(s) 110, 296
BstACI GRCGYC 1 cut(s) 513
BstAFI CTTAAG 1 cut(s) 311
BstDEI CTNAG 3 cut(s) 30, 103, 493
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 103, 290, 370, 440
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 45, 446
BstNI CCWGG 2 cut(s) 78, 92
BstSCI CCNGG 2 cut(s) 76, 90
BstSFI CTRYAG 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuRI GGCC 2 cut(s) 119, 353
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 4 cut(s) 103, 290, 370, 440
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 221, 507
Csp6I GTAC 3 cut(s) 130, 244, 289
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 3 cut(s) 355, 401, 504
CviJI RGCY 8 cut(s) 70, 119, 195, 353, 412, 449, 461, 492
CviKI_1 RGCY 8 cut(s) 70, 119, 195, 353, 412, 449, 461, 492
CviQI GTAC 3 cut(s) 130, 244, 289
DdeI CTNAG 3 cut(s) 30, 103, 493
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 351
Eco130I CCWWGG 3 cut(s) 354, 444, 462
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 221, 507
EcoRII CCWGG 2 cut(s) 76, 90
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 3 cut(s) 354, 444, 462
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 3 cut(s) 354, 444, 462
FaeI CATG 3 cut(s) 358, 404, 507
FaiI YATR 7 cut(s) 139, 178, 356, 402, 431, 454, 505
FatI CATG 3 cut(s) 354, 400, 503
FokI GGATG 4 cut(s) 110, 297, 377, 427
FspBI CTAG 1 cut(s) 517
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 119, 353
HapII CCGG 2 cut(s) 120, 282
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 3 cut(s) 358, 404, 507
HinfI GANTC 2 cut(s) 101, 374
HpaII CCGG 2 cut(s) 120, 282
HphI GGTGA 2 cut(s) 141, 221
Hpy188I TCNGA 4 cut(s) 106, 229, 323, 511
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 110, 296
HpyCH4V TGCA 2 cut(s) 395, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 446
HpyF3I CTNAG 3 cut(s) 30, 103, 493
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 3 cut(s) 358, 404, 507
Kzo9I GATC 1 cut(s) 299
LweI GCATC 4 cut(s) 16, 382, 427, 449
MaeI CTAG 1 cut(s) 517
MaeIII GTNAC 5 cut(s) 86, 209, 233, 332, 371
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 1 cut(s) 63
MfeI CAATTG 1 cut(s) 481
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 3 cut(s) 54, 324, 481
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 2 cut(s) 95, 368
MnlI CCTC 8 cut(s) 53, 81, 84, 88, 191, 193, 212, 423
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 442
MscI TGGCCA 1 cut(s) 353
MseI TTAA 2 cut(s) 312, 327
MslI CAYNNNNRTG 2 cut(s) 229, 359
Msp20I TGGCCA 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 120, 282
MspR9I CCNGG 2 cut(s) 78, 92
MunI CAATTG 1 cut(s) 481
MvaI CCWGG 2 cut(s) 78, 92
MwoI GCNNNNNNNGC 2 cut(s) 45, 446
NcoI CCATGG 1 cut(s) 354
NdeII GATC 1 cut(s) 299
NlaIII CATG 3 cut(s) 358, 404, 507
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 3 cut(s) 209, 233, 371
NsiI ATGCAT 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 194
PflMI CCANNNNNTGG 2 cut(s) 161, 285
PfoI TCCNGGA 1 cut(s) 76
PleI GAGTC 2 cut(s) 95, 368
PpsI GAGTC 2 cut(s) 95, 368
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 76, 90
PspGI CCWGG 2 cut(s) 76, 90
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 2 cut(s) 221, 507
RsaI GTAC 3 cut(s) 131, 245, 290
RsaNI GTAC 3 cut(s) 130, 244, 289
RseI CAYNNNNRTG 2 cut(s) 229, 359
SaqAI TTAA 2 cut(s) 312, 327
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 2 cut(s) 221, 507
SchI GAGTC 2 cut(s) 95, 368
ScrFI CCNGG 2 cut(s) 78, 92
SetI ASST 6 cut(s) 183, 197, 208, 223, 308, 388
SfaNI GCATC 4 cut(s) 16, 382, 427, 449
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 2 cut(s) 221, 507
SmiMI CAYNNNNRTG 2 cut(s) 229, 359
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 54, 324, 481
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 76, 90
StyI CCWWGG 3 cut(s) 354, 444, 462
TaaI ACNGT 2 cut(s) 110, 296
TasI AATT 3 cut(s) 54, 324, 481
Tru1I TTAA 2 cut(s) 312, 327
Tru9I TTAA 2 cut(s) 312, 327
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 3 cut(s) 209, 233, 371
Tsp45I GTSAC 3 cut(s) 209, 233, 371
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 2 cut(s) 161, 285
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 221, 507
VspI ATTAAT 1 cut(s) 327
XspI CTAG 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.