FvH4_7g13963

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000242
Physical Location & Seq
Forward (+)
12435709 .. 12436386
678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13963.t1

Sequence Viewer

Length: 597 bp
ATGTGTCATAATATGAGGCAGTTCATGATGAAGATCCAGATTTGTTCTTATGTGGCCCTTCTCTTGATCTTTATCATTCTTGCTACGAACTGGCTGAGCATTCAAGCTCAAACCTGCAAGCCAAGCGGCACGATAAGGGGAAGAAAGCCTCCTCCAAAGCAATGCAACAAAGAAAATATGTCCGAGTGCTGCAAAAAAGGCAAGCTTTACCCAACTTACAAATGCTCGCCTCATGTGTCCAAGTTTACGAAGGCAACCTTGACGCTCAACAGCTTCCAAAAAGGCGGCGATGGTGGCGCACCTTCGGAATGCGATGGTAAGTACCATCCGGATAGCACCCCCGTGGTGGCATTGTCAACAGGGTGGTTCAACAATAGCAAGAGGTGTTTGCGCTACATTACTATCCATGCTAATGGGAGGAGTGTGAAGGCCAAGGTGGTTGATGAGTGTGACTCCACAATGGGGTGTGATGGTGAACATGATTACCAACCTCCATGTCCTAACAATATTGTTGATGCCTCTAAAGCTGTCTGGAAGGCTTTGGGAGTTAAGAAAAGTGACTGGGGTGAAATGGAAGTACACTGGTCTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

8.97

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 36 - 198 8.9e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 2 cut(s) 126, 285
AclWI GGATC 1 cut(s) 28
AfaI GTAC 2 cut(s) 323, 579
AfiI CCNNNNNNNGG 2 cut(s) 346, 462
AgsI TTSAA 2 cut(s) 104, 370
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 4 cut(s) 107, 205, 273, 527
AluI AGCT 4 cut(s) 107, 205, 273, 527
AlwI GGATC 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 2 cut(s) 54, 429
ApeKI GCWGC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 299, 393
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 485, 578
BbvI GCAGC 1 cut(s) 176
BccI CCATC 4 cut(s) 284, 308, 333, 464
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 127, 190, 286
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 3 cut(s) 128, 191, 287
BmgT120I GGNCC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 2 cut(s) 505, 580
BmuI ACTGGG 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 437, 469
Bpu1102I GCTNAGC 1 cut(s) 95
BsaBI GATNNNNATC 2 cut(s) 32, 71
BsaJI CCNNGG 2 cut(s) 342, 432
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 462
Bse1I ACTGG 3 cut(s) 95, 566, 587
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 2 cut(s) 32, 71
BseAI TCCGGA 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 342, 432
BseGI GGATG 1 cut(s) 325
BseJI GATNNNNATC 2 cut(s) 32, 71
BseLI CCNNNNNNNGG 2 cut(s) 346, 462
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 3 cut(s) 95, 566, 587
BseRI GAGGAG 2 cut(s) 141, 433
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 56, 431
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 346, 462
BsmI GAATGC 2 cut(s) 99, 314
BsnI GGCC 2 cut(s) 56, 431
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 2 cut(s) 33, 66
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 2 cut(s) 126, 285
BspANI GGCC 2 cut(s) 56, 431
BspCNI CTCAG 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 328
BspHI TCATGA 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 3 cut(s) 95, 566, 587
BssECI CCNNGG 2 cut(s) 342, 432
BssMI GATC 2 cut(s) 33, 66
BssT1I CCWWGG 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 119, 203, 227
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 325
BstHHI GCGC 2 cut(s) 299, 393
BstKTI GATC 2 cut(s) 36, 69
BstMBI GATC 2 cut(s) 33, 66
BstMWI GCNNNNNNNGC 4 cut(s) 123, 198, 294, 524
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 2 cut(s) 56, 431
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 2 cut(s) 303, 327
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 580
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 119, 203, 227
CciI TCATGA 1 cut(s) 24
CfoI GCGC 2 cut(s) 299, 393
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 322, 578
CviAII CATG 5 cut(s) 25, 233, 407, 479, 495
CviQI GTAC 2 cut(s) 322, 578
DdeI CTNAG 1 cut(s) 95
DpnI GATC 2 cut(s) 35, 68
DpnII GATC 2 cut(s) 33, 66
Eco130I CCWWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 5 cut(s) 28, 236, 410, 482, 498
FaiI YATR 9 cut(s) 9, 14, 26, 51, 179, 234, 408, 480, 496
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 242, 274
FatI CATG 5 cut(s) 24, 232, 406, 478, 494
Fnu4HI GCNGC 3 cut(s) 127, 190, 286
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 3 cut(s) 127, 190, 286
GlaI GCGC 2 cut(s) 298, 392
GluI GCNGC 3 cut(s) 127, 190, 286
HaeIII GGCC 2 cut(s) 56, 431
HapII CCGG 1 cut(s) 329
HgaI GACGC 1 cut(s) 271
HhaI GCGC 2 cut(s) 299, 393
Hin1II CATG 5 cut(s) 28, 236, 410, 482, 498
Hin6I GCGC 2 cut(s) 297, 391
HinP1I GCGC 2 cut(s) 297, 391
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 329
HphI GGTGA 2 cut(s) 485, 578
Hpy166II GTNNAC 4 cut(s) 246, 357, 476, 580
Hpy188I TCNGA 3 cut(s) 184, 307, 589
Hpy188III TCNNGA 5 cut(s) 25, 37, 64, 329, 532
Hpy8I GTNNAC 4 cut(s) 246, 357, 476, 580
HpyAV CCTTC 5 cut(s) 68, 244, 312, 421, 529
HpyCH4V TGCA 3 cut(s) 117, 165, 192
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 198, 294, 524
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 5 cut(s) 28, 236, 410, 482, 498
HspAI GCGC 2 cut(s) 297, 391
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 33, 66
LpnPI CCDG 8 cut(s) 50, 76, 127, 342, 345, 517, 547, 568
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 505, 580
MaeIII GTNAC 2 cut(s) 449, 557
MalI GATC 2 cut(s) 35, 68
MboI GATC 2 cut(s) 33, 66
MboII GAAGA 2 cut(s) 43, 153
MflI RGATCY 1 cut(s) 33
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 8 cut(s) 9, 159, 162, 240, 375, 411, 501, 529
MroI TCCGGA 1 cut(s) 328
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 2 cut(s) 341, 411
MspI CCGG 1 cut(s) 329
Mva1269I GAATGC 2 cut(s) 99, 314
MwoI GCNNNNNNNGC 4 cut(s) 123, 198, 294, 524
NdeII GATC 2 cut(s) 33, 66
NlaIII CATG 5 cut(s) 28, 236, 410, 482, 498
NmuCI GTSAC 2 cut(s) 449, 557
OliI CACNNNNGTG 1 cut(s) 341
PagI TCATGA 1 cut(s) 24
PctI GAATGC 2 cut(s) 99, 314
PkrI GCNGC 3 cut(s) 128, 191, 287
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 2 cut(s) 323, 579
RsaNI GTAC 2 cut(s) 322, 578
RseI CAYNNNNRTG 2 cut(s) 341, 411
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 3 cut(s) 127, 190, 286
Sau3AI GATC 2 cut(s) 33, 66
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 446
SfaNI GCATC 2 cut(s) 505, 580
SmiMI CAYNNNNRTG 2 cut(s) 341, 411
SsiI CCGC 2 cut(s) 126, 285
SspI AATATT 1 cut(s) 508
StyI CCWWGG 1 cut(s) 432
TatI WGTACW 1 cut(s) 577
TauI GCSGC 2 cut(s) 129, 288
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 2 cut(s) 449, 557
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 2 cut(s) 449, 557
TspDTI ATGAA 2 cut(s) 13, 44
TspRI CASTG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.