Rmu_co7977860.1_g000001

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7977860.1
OG0000242
Physical Location & Seq
Reverse (-)
76 .. 438
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7977860.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atgtccggtaacaccaaggcatacctcactctcaacagctttgaggcaggtggtgacggaggaggcccatctgaatgtgacagcaaatatcataatgacaacactccagttgttgcattatccaccggatggtacaacggtggatcaaggtgccttaacaacatcagaattaatggtaatgggcgtagcgtggtggccatggtggtggatgagtgtgactctactgagggatgtgatgcagaccatgattatcagcctccttgtcccaacaacattgttgatgcctccaaggctgtctggaaagccttaggtgtgtctgaggacaattggggtggcttggatatcacatggtccgacgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.69

Weight (kDa)

4.23

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 129
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 151
AoxI GGCC 2 cut(s) 64, 195
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 65, 351
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 351
AxyI CCTNAGG 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 150
BccI CCATC 2 cut(s) 76, 123
BfuAI ACCTGC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 65, 351
BmiI GGNNCC 1 cut(s) 152
BmsI GCATC 2 cut(s) 226, 271
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 15, 198, 288
BsaWI WCCGGW 2 cut(s) 5, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 15, 198, 288
BseGI GGATG 3 cut(s) 134, 214, 236
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 216, 309
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 75
BshFI GGCC 2 cut(s) 66, 197
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 6, 126
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 66, 197
Bsp143I GATC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 198
BspANI GGCC 2 cut(s) 66, 197
BspCNI CTCAG 2 cut(s) 217, 310
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 15, 198, 288
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 3 cut(s) 15, 198, 288
Bst4CI ACNGT 1 cut(s) 140
BstDEI CTNAG 4 cut(s) 225, 307, 318, 360
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 134, 214, 236
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 66, 197
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 134, 214, 236
BveI ACCTGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 65, 351
Csp6I GTAC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 3 cut(s) 199, 245, 348
CviJI RGCY 7 cut(s) 39, 66, 197, 256, 293, 305, 336
CviKI_1 RGCY 7 cut(s) 39, 66, 197, 256, 293, 305, 336
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 4 cut(s) 225, 307, 318, 360
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 15, 198, 288
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 15, 198, 288
ErhI CCWWGG 3 cut(s) 15, 198, 288
FaeI CATG 3 cut(s) 202, 248, 351
FaiI YATR 5 cut(s) 22, 93, 200, 246, 349
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 198, 244, 347
FokI GGATG 3 cut(s) 141, 221, 243
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 66, 197
HapII CCGG 2 cut(s) 6, 126
Hin1II CATG 3 cut(s) 202, 248, 351
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 6, 126
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 4 cut(s) 73, 167, 319, 355
Hpy188III TCNNGA 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 359
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 116, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 4 cut(s) 225, 307, 318, 360
Hsp92II CATG 3 cut(s) 202, 248, 351
Kzo9I GATC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 19, 33, 120, 139, 283
LweI GCATC 2 cut(s) 226, 271
MaeIII GTNAC 4 cut(s) 8, 53, 77, 215
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MfeI CAATTG 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 2 cut(s) 168, 325
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 8 cut(s) 35, 37, 53, 56, 220, 267, 295, 313
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 156, 171
MslI CAYNNNNRTG 2 cut(s) 73, 203
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 2 cut(s) 6, 126
MunI CAATTG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 143
NlaIII CATG 3 cut(s) 202, 248, 351
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 3 cut(s) 53, 77, 215
PaqCI CACCTGC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 65, 351
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 73, 203
SaqAI TTAA 2 cut(s) 156, 171
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 2 cut(s) 65, 351
SchI GAGTC 1 cut(s) 212
SetI ASST 5 cut(s) 27, 41, 52, 152, 313
SfaNI GCATC 2 cut(s) 226, 271
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 73, 203
Sse9I AATT 2 cut(s) 168, 325
StyI CCWWGG 3 cut(s) 15, 198, 288
TaaI ACNGT 1 cut(s) 140
TasI AATT 2 cut(s) 168, 325
Tru1I TTAA 2 cut(s) 156, 171
Tru9I TTAA 2 cut(s) 156, 171
TseFI GTSAC 3 cut(s) 53, 77, 215
Tsp45I GTSAC 3 cut(s) 53, 77, 215
TspGWI ACGGA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 351
VspI ATTAAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.