Rmu_sc0009527.1_g000002

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009527.1
OG0000242
Physical Location & Seq
Forward (+)
11239 .. 13635
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009527.1_g000002.1.cds

Sequence Viewer

Length: 585 bp
atgaatttagcaaatggtatcggggttgcaccagttgcaccttgcaaagttgctccagtacgttgcacttgcaaaggccgctgcaccccacagatcaagatactcctacatctcatcgtgcgacctggcatgggccctcttcctacatcacctaccatcgtcctaattcttacccaaatgcaaccactccttccatgcagtgatggtatagttatgtcaggtacacatacaaaatcaaccttgacgatcaacagcttcgagaaaggcggtgatggtggtggaccgtctgaatgtgacaataaattctactcggataacaccacggtcgtggcattgtccaccgggtggttcaacaataggaagaggtgttcacactacattaccatgcatgctaatggaaggagtactgtgaaagccaaggttgttgatgagtgtgactccacaatgggttgtgatcttgttcatgattcccagcctccatgccctcacaacatcgttgatgcctctccagctgtttggaaggccttgggagttaaggaaagcgactgggtgaaatgcaaatattctggtctgatgcctgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.77

Weight (kDa)

8.49

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 345
AciI CCGC 2 cut(s) 79, 267
AcsI RAATTY 2 cut(s) 4, 302
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 3 cut(s) 60, 223, 406
AfiI CCNNNNNNNGG 2 cut(s) 131, 345
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 326
AloI GAACNNNNNNTCC 2 cut(s) 352, 384
AluBI AGCT 2 cut(s) 255, 512
AluI AGCT 2 cut(s) 255, 512
AoxI GGCC 3 cut(s) 76, 133, 522
ApaI GGGCCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 4, 302
AspS9I GGNCC 3 cut(s) 133, 134, 281
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 3 cut(s) 141, 281, 562
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 164, 197, 266
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 1 cut(s) 343
BisI GCNGC 2 cut(s) 79, 82
BlsI GCNGC 2 cut(s) 80, 83
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 126, 343
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 133, 134, 281
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 126, 343
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 490, 564
BmuI ACTGGG 1 cut(s) 556
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 2 cut(s) 39, 492
BpuMI CCSGG 1 cut(s) 343
BsaJI CCNNGG 3 cut(s) 321, 417, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 345
Bse1I ACTGG 3 cut(s) 32, 56, 551
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 321, 417, 525
BseLI CCNNNNNNNGG 2 cut(s) 131, 345
BseNI ACTGG 3 cut(s) 32, 56, 551
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 78, 135, 524
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 131, 345
BsnI GGCC 3 cut(s) 78, 135, 524
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 93, 246, 454
BspACI CCGC 2 cut(s) 79, 267
BspANI GGCC 3 cut(s) 78, 135, 524
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 135
BsrI ACTGG 3 cut(s) 32, 56, 551
BssECI CCNNGG 3 cut(s) 321, 417, 525
BssMI GATC 3 cut(s) 93, 246, 454
BssT1I CCWWGG 2 cut(s) 417, 525
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 285, 325, 409
Bst6I CTCTTC 2 cut(s) 144, 356
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 321
BstKTI GATC 3 cut(s) 96, 249, 457
BstMBI GATC 3 cut(s) 93, 246, 454
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 35, 78, 509
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 2 cut(s) 124, 341
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 2 cut(s) 328, 516
BsuRI GGCC 3 cut(s) 78, 135, 524
BtgI CCRYGG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 390
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 133, 134, 281
Csp6I GTAC 3 cut(s) 59, 222, 405
CviAII CATG 6 cut(s) 130, 195, 385, 389, 464, 480
CviJI RGCY 7 cut(s) 78, 135, 255, 416, 475, 512, 524
CviKI_1 RGCY 7 cut(s) 78, 135, 255, 416, 475, 512, 524
CviQI GTAC 3 cut(s) 59, 222, 405
DpnI GATC 3 cut(s) 95, 248, 456
DpnII GATC 3 cut(s) 93, 246, 454
DraIII CACNNNGTG 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 144, 356
EarI CTCTTC 2 cut(s) 144, 356
Eco130I CCWWGG 2 cut(s) 417, 525
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 417, 525
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 417, 525
FaeI CATG 6 cut(s) 133, 198, 388, 392, 467, 483
FaiI YATR 9 cut(s) 131, 196, 209, 215, 228, 386, 390, 465, 481
FatI CATG 6 cut(s) 129, 194, 384, 388, 463, 479
Fnu4HI GCNGC 2 cut(s) 79, 82
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 79, 82
GluI GCNGC 2 cut(s) 79, 82
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 2 cut(s) 39, 492
HaeIII GGCC 3 cut(s) 78, 135, 524
HapII CCGG 1 cut(s) 342
Hin1II CATG 6 cut(s) 133, 198, 388, 392, 467, 483
HinfI GANTC 2 cut(s) 437, 467
HpaII CCGG 1 cut(s) 342
HphI GGTGA 3 cut(s) 141, 281, 562
Hpy166II GTNNAC 4 cut(s) 224, 281, 339, 371
Hpy188I TCNGA 3 cut(s) 289, 313, 573
Hpy188III TCNNGA 3 cut(s) 97, 259, 464
Hpy8I GTNNAC 4 cut(s) 224, 281, 339, 371
HpyAV CCTTC 3 cut(s) 200, 393, 514
HpyCH4III ACNGT 3 cut(s) 285, 325, 409
HpyCH4IV ACGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 78, 509
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 6 cut(s) 133, 198, 388, 392, 467, 483
Kzo9I GATC 3 cut(s) 93, 246, 454
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 490, 564
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 293, 434
MalI GATC 3 cut(s) 95, 248, 456
MboI GATC 3 cut(s) 93, 246, 454
MboII GAAGA 2 cut(s) 131, 373
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 4, 165, 302
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 5 cut(s) 147, 357, 486, 495, 514
Mph1103I ATGCAT 1 cut(s) 390
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 3 cut(s) 326, 383, 393
MspA1I CMGCKG 2 cut(s) 81, 512
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 126, 343
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 35, 78, 509
NciI CCSGG 1 cut(s) 343
NdeII GATC 3 cut(s) 93, 246, 454
NlaIII CATG 6 cut(s) 133, 198, 388, 392, 467, 483
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 293, 434
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 392
OliI CACNNNNGTG 1 cut(s) 326
PaeI GCATGC 1 cut(s) 392
PagI TCATGA 1 cut(s) 463
PceI AGGCCT 1 cut(s) 524
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 2 cut(s) 80, 83
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 135
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 3 cut(s) 133, 134, 281
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 60, 223, 406
RsaNI GTAC 3 cut(s) 59, 222, 405
RseI CAYNNNNRTG 3 cut(s) 326, 383, 393
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 79, 82
Sau3AI GATC 3 cut(s) 93, 246, 454
Sau96I GGNCC 3 cut(s) 133, 134, 281
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 126, 343
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 2 cut(s) 490, 564
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 3 cut(s) 326, 383, 393
SphI GCATGC 1 cut(s) 392
Sse9I AATT 3 cut(s) 4, 165, 302
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 2 cut(s) 79, 267
SspI AATATT 1 cut(s) 563
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 124, 341
StyI CCWWGG 2 cut(s) 417, 525
TaaI ACNGT 3 cut(s) 285, 325, 409
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 258
TasI AATT 3 cut(s) 4, 165, 302
TatI WGTACW 1 cut(s) 404
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 293, 434
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 293, 434
TspDTI ATGAA 2 cut(s) 17, 452
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 2 cut(s) 4, 302
XceI RCATGY 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.