Rroxscaffold_3G00227830

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000242
Physical Location & Seq
Forward (+)
12117835 .. 12118381
547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227830.1

Sequence Viewer

Length: 441 bp
ATGACTTGCTACTTCTCAAAAGGGTATATTCTAGTCATCCTCCTTTTAGCAATCTGCTTGGTTAGTGAAGCTCAACAATGTCATCCAAGTGGAAGGATTAGAGGAAAGAAGTCCCCTCCTGGACAATGCGGTGATGGAGGCGGCCCATCTGAATGTGATGGCAAGTATCACAATGACAACACTCCAGTTGTGGCATTATCCACTGGATGGTACAACGGTGGATCAAGATGCCTTAACAACATCAGAATTAATGGTAATGGGCGCAGTGTAGTGGCCATGGTAGTGGATGAGTGTGACTCAACTGAGGGATGTGATGCGGACCATGATTATCAGCCTCCTTGTCCTAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTAGGTGTATCTGAGGACAATAGGGGTGGCTTAGATATCACATGGTCCGACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.54

Weight (kDa)

5.01

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 43 - 146 3.2e-39 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 3 cut(s) 129, 141, 317
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 273
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 207
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 229
AoxI GGCC 2 cut(s) 142, 273
AseI ATTAAT 1 cut(s) 249
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 143, 319, 429
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 319, 429
AxyI CCTNAGG 1 cut(s) 385
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BalI TGGCCA 1 cut(s) 275
BccI CCATC 4 cut(s) 128, 152, 154, 201
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 319, 429
BmgT120I GGNCC 3 cut(s) 143, 319, 429
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 218, 304, 349
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 276, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 185, 208
Bse21I CCTNAGG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 276, 366
BseGI GGATG 5 cut(s) 36, 82, 212, 292, 314
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 294, 387
BseNI ACTGG 2 cut(s) 185, 208
BshFI GGCC 2 cut(s) 144, 275
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 144, 275
Bsp143I GATC 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 3 cut(s) 129, 141, 317
BspANI GGCC 2 cut(s) 144, 275
BspCNI CTCAG 2 cut(s) 295, 388
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 185, 208
BssECI CCNNGG 2 cut(s) 276, 366
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 276, 366
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 303, 385, 396, 415
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 5 cut(s) 36, 82, 212, 292, 314
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 385
BsuRI GGCC 2 cut(s) 144, 275
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 5 cut(s) 36, 82, 212, 292, 314
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 201, 271
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 3 cut(s) 143, 319, 429
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 3 cut(s) 277, 323, 426
CviJI RGCY 7 cut(s) 71, 144, 275, 334, 371, 383, 414
CviKI_1 RGCY 7 cut(s) 71, 144, 275, 334, 371, 383, 414
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 4 cut(s) 303, 385, 396, 415
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 276, 366
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 319, 429
Eco81I CCTNAGG 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 276, 366
ErhI CCWWGG 2 cut(s) 276, 366
FaeI CATG 3 cut(s) 280, 326, 429
FaiI YATR 5 cut(s) 27, 278, 324, 427, 439
FaqI GGGAC 1 cut(s) 97
FatI CATG 3 cut(s) 276, 322, 425
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 5 cut(s) 23, 69, 219, 299, 321
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 144, 275
HhaI GCGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 280, 326, 429
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 4 cut(s) 151, 245, 397, 433
Hpy188III TCNNGA 2 cut(s) 225, 376
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 4 cut(s) 303, 385, 396, 415
Hsp92II CATG 3 cut(s) 280, 326, 429
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 221
LpnPI CCDG 5 cut(s) 105, 132, 189, 198, 361
LweI GCATC 3 cut(s) 218, 304, 349
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 8 cut(s) 50, 95, 126, 131, 298, 345, 373, 391
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 234, 249
MslI CAYNNNNRTG 3 cut(s) 87, 151, 281
Msp20I TGGCCA 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 368
NcoI CCATGG 1 cut(s) 276
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 280, 326, 429
NmuCI GTSAC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 3 cut(s) 143, 319, 429
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 3 cut(s) 87, 151, 281
SaqAI TTAA 2 cut(s) 234, 249
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 3 cut(s) 143, 319, 429
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 120
SetI ASST 2 cut(s) 73, 391
SfaNI GCATC 3 cut(s) 218, 304, 349
SinI GGWCC 2 cut(s) 319, 429
SmiMI CAYNNNNRTG 3 cut(s) 87, 151, 281
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 129, 141, 317
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 276, 366
TaaI ACNGT 1 cut(s) 218
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 234, 249
Tru9I TTAA 2 cut(s) 234, 249
TscAI CASTG 2 cut(s) 208, 271
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspRI CASTG 2 cut(s) 208, 271
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 319, 429
VspI ATTAAT 1 cut(s) 249
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.