Rroxscaffold_4G00300920

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000242
Physical Location & Seq
Reverse (-)
21289966 .. 21290532
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300920.1

Sequence Viewer

Length: 567 bp
ATGATGAAGAGTTTCTTCTCTAAAGGGTTTATTCTAGCCATTCTGCTTTTGTCAATTTGCTTGGTTAGCGAAGCTCAACAATGTCGTCCAAGCGGAAGGGTTAGAGGGAAGAAACCCCCCCCTCCTGGACAATGCAACCAAGAGGATGACTCTGACTGCTGCAAAGCCGGAAAAATGTACCCAACATACACGTGCTCACCACCGATGTCTGGAAACACTCAGGCCTACCTCACTCTCAACAGCTTCGAAGCAGGCGGTGATGGAGGAGGACCATCTGAATGTGATGGCAAGTACCACAATGACAACACACCAGTTGTGGCATTATCTACTGGATGGTACAATGGTGGATCAAGGTGCCTTAACAACATCAGAATCAATGGTAATGGGCGCAGCGTGGTGGCAATGGTGGTGGATGAGTGTGACTCTACCGAGGGATGCGATGCAGACCATGATTACCAACCTCCTTGTCCTAACAACATTGTGGATGCCTCCAAGGCTGTCTGGAAAGCCTTAGGTGTATCTGAAGACAACTGGGGTGGCTTAGATATCACATGGTCTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.1

Weight (kDa)

4.72

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 21 - 188 8.1e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 2 cut(s) 93, 255
AclWI GGATC 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 543
AcvI CACGTG 1 cut(s) 192
AfaI GTAC 3 cut(s) 179, 293, 338
AfiI CCNNNNNNNGG 2 cut(s) 125, 209
AflIII ACRYGT 1 cut(s) 189
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 2 cut(s) 74, 243
AluI AGCT 2 cut(s) 74, 243
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 1 cut(s) 355
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 159, 390
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 189, 269
AsuII TTCGAA 1 cut(s) 246
AvaII GGWCC 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BanI GGYRCC 1 cut(s) 354
BbrPI CACGTG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 146, 402
BccI CCATC 4 cut(s) 254, 278, 280, 327
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 35
BglI GCCNNNNNGGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 160, 391
BlsI GCNGC 2 cut(s) 161, 392
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 4 cut(s) 425, 430, 475, 550
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 531
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 407, 439
Bpu14I TTCGAA 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 429, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 209
Bse1I ACTGG 3 cut(s) 311, 334, 536
Bse21I CCTNAGG 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 429, 492
BseGI GGATG 5 cut(s) 151, 338, 418, 440, 490
BseLI CCNNNNNNNGG 2 cut(s) 125, 209
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 3 cut(s) 311, 334, 536
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 146, 402
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 125, 209
BsnI GGCC 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 347
BspACI CCGC 2 cut(s) 93, 255
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 1 cut(s) 355
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 311, 334, 536
BssECI CCNNGG 2 cut(s) 429, 492
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 2
BstBAI YACGTR 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 219, 511, 541, 564
BstF5I GGATG 5 cut(s) 151, 338, 418, 440, 490
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 2 cut(s) 66, 494
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 146, 402
BstV2I GAAGAC 1 cut(s) 531
Bsu36I CCTNAGG 1 cut(s) 511
BsuRI GGCC 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 5 cut(s) 151, 338, 418, 440, 490
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 178, 292, 337
CspCI CAANNNNNGTGG 4 cut(s) 390, 425, 517, 552
CviAII CATG 2 cut(s) 449, 552
CviJI RGCY 8 cut(s) 38, 74, 167, 224, 243, 497, 509, 540
CviKI_1 RGCY 8 cut(s) 38, 74, 167, 224, 243, 497, 509, 540
CviQI GTAC 3 cut(s) 178, 292, 337
DdeI CTNAG 4 cut(s) 219, 511, 541, 564
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 1 cut(s) 492
Eco147I AGGCCT 1 cut(s) 224
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 543
Eco72I CACGTG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 452, 555
FaiI YATR 3 cut(s) 187, 450, 553
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 448, 551
Fnu4HI GCNGC 2 cut(s) 160, 391
FokI GGATG 5 cut(s) 158, 345, 425, 447, 497
Fsp4HI GCNGC 2 cut(s) 160, 391
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 389
GluI GCNGC 2 cut(s) 160, 391
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 452, 555
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 3 cut(s) 149, 372, 422
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 189, 269
Hpy188I TCNGA 5 cut(s) 154, 277, 371, 523, 559
Hpy188III TCNNGA 2 cut(s) 210, 502
HpyAV CCTTC 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 135, 162, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 494
HpyF3I CTNAG 4 cut(s) 219, 511, 541, 564
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 452, 555
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 1 cut(s) 347
Lsp1109I GCAGC 2 cut(s) 146, 402
LweI GCATC 4 cut(s) 425, 430, 475, 550
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 4 cut(s) 7, 19, 121, 536
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 54
MlyI GAGTC 2 cut(s) 143, 416
MnlI CCTC 9 cut(s) 98, 132, 136, 239, 257, 260, 424, 471, 499
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 190, 277
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 66, 494
NdeII GATC 1 cut(s) 347
NlaIII CATG 2 cut(s) 452, 555
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 419
NspV TTCGAA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 2 cut(s) 161, 392
PleI GAGTC 2 cut(s) 143, 416
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
PpsI GAGTC 2 cut(s) 143, 416
Ppu21I YACGTR 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 124
PspCI CACGTG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 3 cut(s) 179, 293, 338
RsaNI GTAC 3 cut(s) 178, 292, 337
RseI CAYNNNNRTG 2 cut(s) 190, 277
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 160, 391
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 143, 416
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 197
SetI ASST 7 cut(s) 76, 194, 231, 245, 356, 463, 517
SfaNI GCATC 4 cut(s) 425, 430, 475, 550
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 190, 277
Sse9I AATT 1 cut(s) 54
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 2 cut(s) 93, 255
SspMI CTAG 1 cut(s) 35
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 492
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 2 cut(s) 159, 390
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.