Rh1DG245700

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000242
Physical Location & Seq
Reverse (-)
46017591 .. 46018174
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG245700.1

Sequence Viewer

Length: 576 bp
ATGAAGTACCACTTTTGTTCTTCCGGTGCTTTTCTCTTCATCTTCATCATTCTTGTAACAATCTGTTTGAGCATTGAAGCTCAAACCTGCAATCCAAGTGGCAAAATAGTCGGTAAAAAGCCTCCTCCGGGACAATGTAACCCTGAGAACCAGTCTGAATGCTGCAAAAAAGGCAAGCTCTACACCACTTACAAGTGCTCTCCTCCGGTGTCCAAGCATACAAAAGCAACGTTGACGATCAACAGCTTCAAGAAAGGTGGTGATGGTGGTGGAGCGTCTGAATGTGACAATAAATTCCACTCGGATAACACCCGGGTCGTGGCATTGTCCACCGGGTGGTTCAACAATAGGAAGAGGTGTTCACACTACATTACCATACATGGTAATGGAAGGAGTGTGAAAGCCAAAGTTGTTGATGAGTGTGACTCCACAATGGGTTGTGATCCTGATCATGATTACCAGCCTCCATGCCCTCACAACATCGTTGATGCCTCTCCAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGATAGCGACTGGGGTGAAATGCAGATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

8.22

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 27 - 191 1.3e-68 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 336
AclI AACGTT 1 cut(s) 230
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 336
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 128, 319, 336
AgsI TTSAA 3 cut(s) 77, 250, 343
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 4 cut(s) 80, 178, 246, 500
AluI AGCT 4 cut(s) 80, 178, 246, 500
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 293
AsuC2I CCSGG 4 cut(s) 129, 313, 314, 334
AsuHPI GGTGA 2 cut(s) 272, 557
AvaI CYCGRG 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 4 cut(s) 129, 313, 314, 334
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 4 cut(s) 129, 313, 314, 334
BmeT110I CYCGRG 1 cut(s) 312
BmrFI CCNGG 4 cut(s) 129, 313, 314, 334
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 478, 559
BmuI ACTGGG 1 cut(s) 550
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 4 cut(s) 129, 313, 314, 334
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 312, 513
BsaWI WCCGGW 2 cut(s) 23, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 319, 336
Bse1I ACTGG 2 cut(s) 151, 545
Bse8I GATNNNNATC 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 312, 513
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 128, 319, 336
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 151, 545
BseRI GAGGAG 2 cut(s) 114, 192
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 5 cut(s) 24, 128, 206, 313, 333
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 128, 319, 336
BsmFI GGGAC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 237, 442, 448
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 2 cut(s) 151, 545
BssECI CCNNGG 2 cut(s) 312, 513
BssMI GATC 3 cut(s) 237, 442, 448
BssT1I CCWWGG 1 cut(s) 513
Bst6I CTCTTC 2 cut(s) 41, 347
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 3 cut(s) 240, 445, 451
BstMBI GATC 3 cut(s) 237, 442, 448
BstMWI GCNNNNNNNGC 2 cut(s) 171, 497
BstSCI CCNGG 4 cut(s) 127, 311, 312, 332
BstV1I GCAGC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 512
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 176
CciI TCATGA 1 cut(s) 451
Cfr9I CCCGGG 1 cut(s) 312
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 7
CspCI CAANNNNNGTGG 4 cut(s) 79, 114, 238, 273
CviAII CATG 3 cut(s) 380, 452, 468
CviJI RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
CviKI_1 RGCY 8 cut(s) 80, 121, 178, 246, 404, 463, 500, 512
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 239, 444, 450
DpnII GATC 3 cut(s) 237, 442, 448
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 41, 347
EarI CTCTTC 2 cut(s) 41, 347
Eco130I CCWWGG 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 3 cut(s) 383, 455, 471
FaiI YATR 5 cut(s) 219, 377, 381, 453, 469
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 379, 451, 467
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 512
HapII CCGG 5 cut(s) 24, 128, 206, 313, 333
HgaI GACGC 1 cut(s) 264
Hin1II CATG 3 cut(s) 383, 455, 471
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 425
HpaII CCGG 5 cut(s) 24, 128, 206, 313, 333
HphI GGTGA 2 cut(s) 272, 557
Hpy166II GTNNAC 3 cut(s) 234, 330, 362
Hpy188I TCNGA 4 cut(s) 157, 280, 304, 568
Hpy188III TCNNGA 3 cut(s) 250, 446, 452
Hpy8I GTNNAC 3 cut(s) 234, 330, 362
HpyAV CCTTC 2 cut(s) 384, 502
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 90, 165, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 497
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 3 cut(s) 383, 455, 471
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 237, 442, 448
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 2 cut(s) 478, 559
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 4 cut(s) 55, 137, 284, 422
MalI GATC 3 cut(s) 239, 444, 450
MboI GATC 3 cut(s) 237, 442, 448
MboII GAAGA 4 cut(s) 12, 28, 34, 364
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 7 cut(s) 132, 135, 213, 348, 474, 483, 502
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 5 cut(s) 24, 128, 206, 313, 333
MspR9I CCNGG 4 cut(s) 129, 313, 314, 334
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 171, 497
NciI CCSGG 4 cut(s) 129, 313, 314, 334
NdeII GATC 3 cut(s) 237, 442, 448
NlaIII CATG 3 cut(s) 383, 455, 471
NmuCI GTSAC 2 cut(s) 284, 422
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 512
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 237, 442, 448
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 4 cut(s) 129, 313, 314, 334
SduI GDGCHC 1 cut(s) 200
SetI ASST 8 cut(s) 82, 89, 180, 233, 248, 259, 359, 502
SfaNI GCATC 2 cut(s) 478, 559
SmaI CCCGGG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 512
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 4 cut(s) 127, 311, 312, 332
StyI CCWWGG 1 cut(s) 513
TaiI ACGT 1 cut(s) 233
TasI AATT 1 cut(s) 293
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 2 cut(s) 284, 422
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 2 cut(s) 284, 422
TspDTI ATGAA 3 cut(s) 17, 28, 34
TspMI CCCGGG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.