RLG00000028207

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
20044838 .. 20045389
552 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028207

Sequence Viewer

Length: 552 bp
ATGAAGAGCTTCTTCTCAACAGGGTCTATTATAGCCATTCTTCTTTTGGCAATTTTCTTGGTTAGTGAAGCTCAGCAATGTAGTTCAAGTGGTGAAATCATAGGAACTCCTGGACAATGTAACCAGGAGAATGGCGCCGAGTGCTGCGAAGACGGAAAACAGTACCCAACATACACGTGCTCGCCACCTGTGTCCGGCAACACCCAGGCCAAACTCCATCTTAACAGCTTTGAAGAAGGCGGTGATGGAGGATTCCAATCCAAATGTGACAACCAGTACCATGATGACAACACTCCAGTTGTGGCATTATCCACCGGATGGTATGACAATAACTCAAGGTGCTCTAAGTACATCACAATTAACGGTAATGGGGCGAGTGTGAACGCCATGGTCGTGGATGAGTGTGACTCTACTAAAGGATGTGATGCAGAACATAATTATCAGCCTCCTTGTCCTAACAACATTGTTGATGCTTCCAAGGCTGTATGGGAAGCCTTGGGTGTGTCTGAAGACGAACGGGGTGAAATAGATATCACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.61

Weight (kDa)

4.19

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 16 - 183 2.2e-68 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 3 cut(s) 164, 278, 350
AfiI CCNNNNNNNGG 2 cut(s) 194, 318
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 87, 233
AjnI CCWGG 3 cut(s) 109, 123, 204
AluBI AGCT 3 cut(s) 9, 71, 228
AluI AGCT 3 cut(s) 9, 71, 228
Alw21I GWGCWC 2 cut(s) 182, 344
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 104, 254, 533
BanI GGYRCC 1 cut(s) 134
BbrPI CACGTG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 156, 516
Bbv12I GWGCWC 2 cut(s) 182, 344
BbvI GCAGC 1 cut(s) 131
BccI CCATC 3 cut(s) 225, 239, 312
BciT130I CCWGG 3 cut(s) 111, 125, 206
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 111, 125, 206
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 3 cut(s) 111, 125, 206
BmsI GCATC 2 cut(s) 415, 460
BpiI GAAGAC 2 cut(s) 156, 516
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 4 cut(s) 204, 387, 477, 495
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 318
Bse1I ACTGG 2 cut(s) 274, 296
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 256
BseBI CCWGG 3 cut(s) 111, 125, 206
BseDI CCNNGG 4 cut(s) 204, 387, 477, 495
BseGI GGATG 3 cut(s) 323, 403, 425
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 194, 318
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 274, 296
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 182, 344
BsiSI CCGG 2 cut(s) 195, 315
BslI CCNNNNNNNGG 2 cut(s) 194, 318
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 182, 344
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 274, 296
BssECI CCNNGG 4 cut(s) 204, 387, 477, 495
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 3 cut(s) 387, 477, 495
Bst2UI CCWGG 3 cut(s) 111, 125, 206
Bst4CI ACNGT 2 cut(s) 162, 365
BstACI GRCGYC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 72, 345, 549
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 323, 403, 425
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 141, 479
BstNI CCWGG 3 cut(s) 111, 125, 206
BstSCI CCNGG 3 cut(s) 109, 123, 204
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 2 cut(s) 156, 516
BstXI CCANNNNNNTGG 2 cut(s) 131, 394
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 323, 403, 425
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 3 cut(s) 163, 277, 349
CviAII CATG 3 cut(s) 281, 388, 537
CviJI RGCY 8 cut(s) 9, 35, 71, 209, 228, 445, 482, 494
CviKI_1 RGCY 8 cut(s) 9, 35, 71, 209, 228, 445, 482, 494
CviQI GTAC 3 cut(s) 163, 277, 349
DdeI CTNAG 3 cut(s) 72, 345, 549
DinI GGCGCC 1 cut(s) 136
Eco130I CCWWGG 3 cut(s) 387, 477, 495
Eco32I GATATC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 177
EcoRII CCWGG 3 cut(s) 109, 123, 204
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 3 cut(s) 387, 477, 495
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 3 cut(s) 387, 477, 495
FaeI CATG 3 cut(s) 284, 391, 540
FaiI YATR 9 cut(s) 32, 101, 172, 282, 324, 389, 435, 487, 538
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 280, 387, 536
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 3 cut(s) 330, 410, 432
Fsp4HI GCNGC 1 cut(s) 145
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 195, 315
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 284, 391, 540
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 252, 407
HpaII CCGG 2 cut(s) 195, 315
HphI GGTGA 3 cut(s) 104, 254, 533
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 508, 544
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 162, 365
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 479
HpyF3I CTNAG 3 cut(s) 72, 345, 549
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 284, 391, 540
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 415, 460
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 3 cut(s) 119, 266, 404
MboII GAAGA 6 cut(s) 4, 16, 32, 161, 245, 521
MhlI GDGCHC 2 cut(s) 182, 344
MluCI AATT 3 cut(s) 51, 357, 436
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 2 cut(s) 242, 456
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 222, 360
MslI CAYNNNNRTG 2 cut(s) 175, 392
MspI CCGG 2 cut(s) 195, 315
MspR9I CCNGG 3 cut(s) 111, 125, 206
MvaI CCWGG 3 cut(s) 111, 125, 206
MwoI GCNNNNNNNGC 2 cut(s) 141, 479
NarI GGCGCC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 387
NlaIII CATG 3 cut(s) 284, 391, 540
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 266, 404
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 401
PluTI GGCGCC 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 109, 123, 204
PspCI CACGTG 1 cut(s) 177
PspGI CCWGG 3 cut(s) 109, 123, 204
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 3 cut(s) 164, 278, 350
RsaNI GTAC 3 cut(s) 163, 277, 349
RseI CAYNNNNRTG 2 cut(s) 175, 392
SaqAI TTAA 2 cut(s) 222, 360
SatI GCNGC 1 cut(s) 145
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 111, 125, 206
SduI GDGCHC 2 cut(s) 182, 344
SetI ASST 6 cut(s) 11, 73, 179, 190, 230, 341
SfaNI GCATC 2 cut(s) 415, 460
SfoI GGCGCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 175, 392
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 3 cut(s) 51, 357, 436
SsiI CCGC 1 cut(s) 240
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 109, 123, 204
StyI CCWWGG 3 cut(s) 387, 477, 495
TaaI ACNGT 2 cut(s) 162, 365
TaiI ACGT 1 cut(s) 179
TasI AATT 3 cut(s) 51, 357, 436
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 222, 360
Tru9I TTAA 2 cut(s) 222, 360
TseFI GTSAC 2 cut(s) 266, 404
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 2 cut(s) 266, 404
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.