Rroxscaffold_4G00300990

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000242
Physical Location & Seq
Reverse (-)
21331541 .. 21332574
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300990.1

Sequence Viewer

Length: 552 bp
ATGAAGAGCTTCTTCTCAACAGGGTCTATTATAGCCATTCTTCTTTTGGCAATTTTCTTGGTTAGTGAAGCTCAGCAATGTAGTTCAAGTGGTAAAATTGAAGGAACTACTGGACAATGTAACCAGGAGAATGGCGCCAAGTGCTGCAAAGACGGAGATCTGTACCCAACATACAAGTGCTCGCCACCTGTGTCCGGCAACACCCAGGCCAATCTCACTCTTAACAGCTTCGAAGCAGGCGGTGACGGAGGAGGCGAATCCAAATGTGACGAACAGTACCACGATGACAACACTCCCGTTGTGGCATTATCCACCGGATGGTACAACGGTGGATCAAGGTGCCTTAGGAACATCAGAATTAACGGTAATGGGCGGAGTGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTAATAATGGATGTGATGAAGAACATGATTATCAGCCTCCTTGTGATAACAACGTAGTTGATGCTTCCAAGGCTGTATGGGAAGCCTTGGATGTGTCTAAAGACAAAGGTTACTCAGATATCACATGGTCTGACGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.53

Weight (kDa)

4.35

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 16 - 181 4.1e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
AccB1I GGYRCC 2 cut(s) 134, 339
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 2 cut(s) 240, 373
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 384
AcyI GRCGYC 2 cut(s) 135, 543
AfaI GTAC 3 cut(s) 164, 278, 323
AfiI CCNNNNNNNGG 2 cut(s) 194, 318
AgsI TTSAA 2 cut(s) 87, 101
AjnI CCWGG 2 cut(s) 123, 204
AluBI AGCT 3 cut(s) 9, 71, 228
AluI AGCT 3 cut(s) 9, 71, 228
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 340
AoxI GGCC 2 cut(s) 207, 384
ApeKI GCWGC 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 313, 346
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 2 cut(s) 134, 339
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 312
BciT130I CCWGG 2 cut(s) 125, 206
BfoI RGCGCY 1 cut(s) 138
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 125, 206
BmiI GGNNCC 2 cut(s) 136, 341
BmrFI CCNGG 2 cut(s) 125, 206
BmsI GCATC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu1102I GCTNAGC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 135, 543
BsaJI CCNNGG 4 cut(s) 204, 387, 477, 495
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 318
Bse1I ACTGG 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 125, 206
BseDI CCNNGG 4 cut(s) 204, 387, 477, 495
BseGI GGATG 4 cut(s) 323, 403, 425, 505
BseLI CCNNNNNNNGG 2 cut(s) 194, 318
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 86, 537
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 209, 386
BshNI GGYRCC 2 cut(s) 134, 339
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 195, 315
BslI CCNNNNNNNGG 2 cut(s) 194, 318
BsnI GGCC 2 cut(s) 209, 386
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 157, 332
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 2 cut(s) 240, 373
BspANI GGCC 2 cut(s) 209, 386
BspCNI CTCAG 2 cut(s) 85, 536
BspLI GGNNCC 2 cut(s) 136, 341
BspPI GGATC 1 cut(s) 340
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 134, 339
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 204, 387, 477, 495
BssMI GATC 2 cut(s) 157, 332
BssNI GRCGYC 2 cut(s) 135, 543
BssT1I CCWWGG 3 cut(s) 387, 477, 495
Bst2UI CCWGG 2 cut(s) 125, 206
Bst4CI ACNGT 3 cut(s) 276, 329, 365
BstACI GRCGYC 2 cut(s) 135, 543
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 182, 238
BstDEI CTNAG 4 cut(s) 72, 344, 523, 549
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 4 cut(s) 323, 403, 425, 505
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 160, 335
BstMBI GATC 2 cut(s) 157, 332
BstMWI GCNNNNNNNGC 2 cut(s) 141, 479
BstNI CCWGG 2 cut(s) 125, 206
BstSCI CCNGG 2 cut(s) 123, 204
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 157
BstXI CCANNNNNNTGG 2 cut(s) 131, 394
BstYI RGATCY 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 344
BsuRI GGCC 2 cut(s) 209, 386
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 4 cut(s) 323, 403, 425, 505
Cac8I GCNNGC 2 cut(s) 182, 238
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 3 cut(s) 163, 277, 322
CviAII CATG 3 cut(s) 388, 434, 534
CviJI RGCY 9 cut(s) 9, 35, 71, 209, 228, 386, 445, 482, 494
CviKI_1 RGCY 9 cut(s) 9, 35, 71, 209, 228, 386, 445, 482, 494
CviQI GTAC 3 cut(s) 163, 277, 322
DdeI CTNAG 4 cut(s) 72, 344, 523, 549
DinI GGCGCC 1 cut(s) 136
DpnI GATC 2 cut(s) 159, 334
DpnII GATC 2 cut(s) 157, 332
EaeI YGGCCR 1 cut(s) 384
EciI GGCGGA 1 cut(s) 388
Eco130I CCWWGG 3 cut(s) 387, 477, 495
Eco32I GATATC 1 cut(s) 529
Eco81I CCTNAGG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 123, 204
EcoRV GATATC 1 cut(s) 529
EcoT14I CCWWGG 3 cut(s) 387, 477, 495
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 3 cut(s) 387, 477, 495
FaeI CATG 3 cut(s) 391, 437, 537
FaiI YATR 6 cut(s) 32, 172, 389, 435, 487, 535
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 387, 433, 533
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 4 cut(s) 330, 410, 432, 512
Fsp4HI GCNGC 1 cut(s) 145
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 209, 386
HapII CCGG 2 cut(s) 195, 315
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 135, 543
Hin1II CATG 3 cut(s) 391, 437, 537
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 257, 407
HpaII CCGG 2 cut(s) 195, 315
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 356, 526, 541
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 3 cut(s) 276, 329, 365
HpyCH4IV ACGT 2 cut(s) 462, 543
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 479
HpyF3I CTNAG 4 cut(s) 72, 344, 523, 549
HpySE526I ACGT 2 cut(s) 462, 543
Hsp92I GRCGYC 2 cut(s) 135, 543
Hsp92II CATG 3 cut(s) 391, 437, 537
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 157, 332
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 460
MaeII ACGT 2 cut(s) 462, 543
MaeIII GTNAC 5 cut(s) 119, 242, 266, 404, 518
MalI GATC 2 cut(s) 159, 334
MboI GATC 2 cut(s) 157, 332
MboII GAAGA 4 cut(s) 4, 16, 32, 440
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 3 cut(s) 51, 96, 357
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 3 cut(s) 242, 245, 456
Mox20I TGGCCA 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 386
MseI TTAA 2 cut(s) 222, 360
MslI CAYNNNNRTG 2 cut(s) 175, 392
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 2 cut(s) 195, 315
MspR9I CCNGG 2 cut(s) 125, 206
MvaI CCWGG 2 cut(s) 125, 206
MwoI GCNNNNNNNGC 2 cut(s) 141, 479
NarI GGCGCC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 387
NdeII GATC 2 cut(s) 157, 332
NlaIII CATG 3 cut(s) 391, 437, 537
NlaIV GGNNCC 2 cut(s) 136, 341
NmuCI GTSAC 3 cut(s) 242, 266, 404
NspV TTCGAA 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 401
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 123, 204
PspGI CCWGG 2 cut(s) 123, 204
PspN4I GGNNCC 2 cut(s) 136, 341
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 3 cut(s) 164, 278, 323
RsaNI GTAC 3 cut(s) 163, 277, 322
RseI CAYNNNNRTG 2 cut(s) 175, 392
SaqAI TTAA 2 cut(s) 222, 360
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 157, 332
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 125, 206
SduI GDGCHC 1 cut(s) 182
SetI ASST 8 cut(s) 11, 73, 190, 230, 341, 465, 520, 546
SfaNI GCATC 1 cut(s) 460
SfoI GGCGCC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 175, 392
Sse9I AATT 3 cut(s) 51, 96, 357
SsiI CCGC 2 cut(s) 240, 373
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 123, 204
StyI CCWWGG 3 cut(s) 387, 477, 495
TaaI ACNGT 3 cut(s) 276, 329, 365
TaiI ACGT 2 cut(s) 465, 546
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 51, 96, 357
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 222, 360
Tru9I TTAA 2 cut(s) 222, 360
TseFI GTSAC 3 cut(s) 242, 266, 404
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 3 cut(s) 242, 266, 404
TspDTI ATGAA 2 cut(s) 17, 441
TspGWI ACGGA 2 cut(s) 168, 261
Van91I CCANNNNNTGG 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 8
ZraI GACGTC 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.