Rh7CG452200

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000242
Physical Location & Seq
Reverse (-)
59432511 .. 59433868
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG452200.1

Sequence Viewer

Length: 408 bp
ATGCAATGCTTTGAAAAAACAATAGCTTCCAATACTCCTGGTGCTACACCTCACCACCTATACAAATTCTTAATAAACAAGAGCTTTGAGGCAGGTGGTGATGGAGGAGGCCCATCCGAATGTGATGGCAAGTATCACAATGACAGCACTCCAGTTGTGGCATTATCCACTAGTTGGTACAACAGTGGATCAAGATGCCTTAACAACATCAGAATTAATGGTAATGGGCGGAGTGTGGTAGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATAAGGACCATGATTATCAGCCTCCTTATCCCAACAACATTGTTGATGCCTCCAAGGCTATCTGGAAAGCCTTGGGTGTATCTAGGGACAACTGGGGTGGCTTGGATATCACATGGTCCGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.63

Weight (kDa)

4.99

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 24 - 135 7.1e-42 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 174
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 14
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 26, 84
AluI AGCT 2 cut(s) 26, 84
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 65
AseI ATTAAT 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 110, 286, 396
AsuHPI GGTGA 2 cut(s) 44, 110
AvaII GGWCC 2 cut(s) 286, 396
BaeI ACNNNNGTAYC 2 cut(s) 169, 202
BccI CCATC 3 cut(s) 95, 119, 121
BciT130I CCWGG 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 171, 363
BfuAI ACCTGC 1 cut(s) 83
BglI GCCNNNNNGGC 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 286, 396
BmgT120I GGNCC 3 cut(s) 110, 286, 396
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 185, 316
BmuI ACTGGG 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 243, 333, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 152, 377
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 243, 333, 351
BseGI GGATG 3 cut(s) 113, 259, 281
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 152, 377
BseRI GAGGAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 152, 377
BssECI CCNNGG 3 cut(s) 243, 333, 351
BssMI GATC 1 cut(s) 188
BssT1I CCWWGG 3 cut(s) 243, 333, 351
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 113, 259, 281
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 113, 259, 281
BtsIMutI CAGTG 1 cut(s) 190
BveI ACCTGC 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 110, 286, 396
Csp6I GTAC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 3 cut(s) 244, 290, 393
CviJI RGCY 8 cut(s) 26, 84, 111, 242, 301, 338, 350, 381
CviKI_1 RGCY 8 cut(s) 26, 84, 111, 242, 301, 338, 350, 381
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 3 cut(s) 243, 333, 351
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 286, 396
EcoRII CCWGG 1 cut(s) 37
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 3 cut(s) 243, 333, 351
ErhI CCWWGG 3 cut(s) 243, 333, 351
FaeI CATG 3 cut(s) 247, 293, 396
FaiI YATR 4 cut(s) 61, 245, 291, 394
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 243, 289, 392
FokI GGATG 3 cut(s) 100, 266, 288
FspBI CTAG 2 cut(s) 171, 363
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 3 cut(s) 247, 293, 396
HinfI GANTC 1 cut(s) 263
HphI GGTGA 2 cut(s) 44, 110
Hpy188I TCNGA 3 cut(s) 118, 212, 400
Hpy188III TCNNGA 2 cut(s) 192, 343
Hpy99I CGWCG 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 3 cut(s) 247, 293, 396
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 6 cut(s) 24, 51, 78, 165, 328, 358
LweI GCATC 2 cut(s) 185, 316
MaeI CTAG 2 cut(s) 171, 363
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MluCI AATT 2 cut(s) 65, 213
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 7 cut(s) 60, 82, 98, 101, 265, 312, 340
MseI TTAA 4 cut(s) 71, 201, 216, 406
MslI CAYNNNNRTG 2 cut(s) 118, 248
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 335
NcoI CCATGG 1 cut(s) 243
NdeII GATC 1 cut(s) 188
NlaIII CATG 3 cut(s) 247, 293, 396
NmuCI GTSAC 1 cut(s) 260
PaqCI CACCTGC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 174
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 3 cut(s) 110, 286, 396
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 118, 248
SaqAI TTAA 4 cut(s) 71, 201, 216, 406
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 3 cut(s) 110, 286, 396
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 39
SetI ASST 5 cut(s) 28, 52, 60, 86, 97
SfaNI GCATC 2 cut(s) 185, 316
SinI GGWCC 2 cut(s) 286, 396
SmiMI CAYNNNNRTG 2 cut(s) 118, 248
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 2 cut(s) 65, 213
SsiI CCGC 1 cut(s) 229
SspMI CTAG 2 cut(s) 171, 363
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 3 cut(s) 243, 333, 351
TaaI ACNGT 1 cut(s) 185
TasI AATT 2 cut(s) 65, 213
Tru1I TTAA 4 cut(s) 71, 201, 216, 406
Tru9I TTAA 4 cut(s) 71, 201, 216, 406
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 286, 396
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 65
XspI CTAG 2 cut(s) 171, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.