Rorug01G0120900

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000242
Physical Location & Seq
Reverse (-)
21073228 .. 21073542
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0120900.1

Sequence Viewer

Length: 315 bp
ATGAAGTGTGAAAATCCGGTGGATTCTTCTGTCTATGTGGAGACTGCTCCATGCATTAATATCAGCGCAGATACTTCTCTGTCCAAACCCAAAAGCTATGGCTATGTCACGATTGGTGCAAATGCTTCCGAATTTGAGACTGGGTGCACTGTAGAGTGGTCAACGGCTATCTCTTCCTTGTTCCAAGAAGATCAAAATGCTTCAGATATATCAATACATCAACAATTAATGCTTTGTTGTATGGCTTTGATGCCTTTGAACTTGGATTGTCTTATGAGCCCCCTTCTGCACATCAGGATGGAACCGCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

4.3

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 35, 131
Alw44I GTGCAC 1 cut(s) 145
ApaLI GTGCAC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 2 cut(s) 57, 227
AspLEI GCGC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 35, 131
BfaI CTAG 1 cut(s) 313
BfmI CTRYAG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 17
BsmAI GTCTC 2 cut(s) 35, 131
Bsp1286I GDGCHC 2 cut(s) 149, 281
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 145
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 35, 131
BstMBI GATC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 1 cut(s) 68
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 96, 102, 167, 245, 279
CviKI_1 RGCY 5 cut(s) 96, 102, 167, 245, 279
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 1 cut(s) 54
FaiI YATR 7 cut(s) 36, 52, 99, 105, 209, 242, 275
FatI CATG 1 cut(s) 50
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 281
FspBI CTAG 1 cut(s) 313
GlaI GCGC 1 cut(s) 67
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 147, 162
Hpy188I TCNGA 2 cut(s) 130, 205
Hpy188III TCNNGA 2 cut(s) 109, 295
Hpy8I GTNNAC 2 cut(s) 147, 162
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 54, 119, 147, 289
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 30, 126, 280
LweI GCATC 1 cut(s) 240
MaeI CTAG 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 18, 165, 200
MhlI GDGCHC 2 cut(s) 149, 281
MluCI AATT 2 cut(s) 131, 224
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 2 cut(s) 57, 227
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 1 cut(s) 17
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 23
PshBI ATTAAT 2 cut(s) 57, 227
PspN4I GGNNCC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 2 cut(s) 57, 227
Sau3AI GATC 1 cut(s) 190
SduI GDGCHC 2 cut(s) 149, 281
SetI ASST 1 cut(s) 98
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 150
SgeI CNNG 8 cut(s) 29, 63, 121, 153, 190, 197, 274, 307
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 2 cut(s) 131, 224
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 131, 224
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 57, 227
Tru9I TTAA 2 cut(s) 57, 227
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 154
VneI GTGCAC 1 cut(s) 145
VspI ATTAAT 2 cut(s) 57, 227
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.