Rorug07G0276600

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000242
Physical Location & Seq
Forward (+)
26468256 .. 26474828
6573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0276600.1

Sequence Viewer

Length: 1686 bp
ATGAAGAGAGGACTTGCTTGTTGCACCCGGGACAGGGAGATTAGCATCGACTTTGATGAACAAGAGAGAATAATGACATACAATGGCCTTGAAAATTGCATTCTGAATGTACAATCTTTTGAGAATGAGAGCGGAACAAGTAGAGGAGATGGGTTTGCAACTGACTCACTGGATGATGATGCTTCCACCTGTTCTTCTGGCAAAGATGCATTTGGCTCATTCTCTTCAAAATGGTTGACAGTGAACAAAGATGACCATGGTCTGGATGAATGGGAGCACTTAGACAGTCCCAGGAATTTCTATGTCAAAGAAAAACCTGCTTATGCACTCCAGTATACAGATGTGGAGGCAATGAAAGAAAAGTTTGCAAAGCTGCTATTGGGTGAAGATATTACAGGAGGGTACAATGGCCTCAGCACTGCTTTAGCATTGTCAAATGCCATCACAAATCTAGCAGCAACGGTTTTTGGAGAGCTGTGGAAACTGGAACCACTATCTGAAGAGAGGAAAACAAAATGGCAAAGAGAAATGGACTGGTTGCTCTCCCCTACTAACTATATGGTTGAGCTGGTTCCTTCCAGGCAAAATGGTGCTAATGGCCGGACATTAGAGATTATGACTCCGAAAGCTCGTGCAGACATACATCTCAATCTTCCAGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAGCAGGGCAGAAGGACGAAACAGAACTCCAGGTCAGAGCAAGAGATGGTGGCTCCCATCACCCCAGGTACCAGCTACTGGACTCTCTGATACAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTACATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGTCAGGAAAAGCAAGCCTGGGTGAGGAACTGTACAAGGTCTTAACTGCAGAATCAAGCTCAGCTGAGGAAATGCTTAATTCTCTCAATCTAAAATCCGAACATAATGCCCTCGAGGTCATCAACAGGCTGGAAGCTGCTGTATTTTCGTGGAAAGAAAGAATTACAGAACAAGAAAGTGGTAGATCCCCTGTTCGAACATCATGGTCCTTCATTAAGGACCCAATGTCTGAGATTGATAAGATGGAGTCCCTATTGGATCGAGCAGAAAGACTTGTACAGCGGCTCAAGAACAGATACCACAACCTTCCCCGAACTTTTCTTGACGTCACAAAAATCCAATACGGCAAGGATGTTGGGCATTCAATCTTGGAAGCATATTCTCGAGTCCTTGGAAATTTGGCTTTCAGCATACTGTCTAGAATAGGTGATGTACTGCAAGAAGATGCTCTGAACACTCCCAGTTCATTTACAGCATCATCTTACTTCCCAGGGATTAATTTTACTAATAAATTAGAAACTTCAGTGCTTGGCCAAAACATAAGATACTCATTCCTTGATCGAAGCAGTGGGGATCACCGTAATTCTGACTCTACTTCATCTAATATTGATTTAGAGTTTTCGTACAGTGTGACTAAAGGAAGTCCTGTAACAGCAACACCAAGTCGGGCTAGGGTTTGGTGCATTGGTAGAGAGGCTTGTATCAGTGTTTCCCCTACAAATTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

561

Amino Acids

62.62

Weight (kDa)

5.55

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 114 - 469 2.3e-167 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1284
AbsI CCTCGAGG 1 cut(s) 1067
Acc36I ACCTGC 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 805
AccB7I CCANNNNNTGG 2 cut(s) 262, 815
AccBSI CCGCTC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 335
AciI CCGC 2 cut(s) 132, 1237
AclWI GGATC 3 cut(s) 1134, 1221, 1536
AcoI YGGCCR 2 cut(s) 598, 1486
AcsI RAATTY 3 cut(s) 295, 1351, 1675
AcuI CTGAAG 2 cut(s) 519, 1461
AcyI GRCGYC 1 cut(s) 1281
AfaI GTAC 8 cut(s) 111, 404, 807, 867, 989, 1233, 1389, 1580
AfiI CCNNNNNNNGG 7 cut(s) 33, 34, 262, 815, 939, 959, 979
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 7 cut(s) 92, 228, 689, 702, 880, 917, 1320
AhdI GACNNNNNGTC 1 cut(s) 1180
AjnI CCWGG 6 cut(s) 290, 578, 766, 801, 972, 1444
AluBI AGCT 8 cut(s) 373, 475, 568, 629, 812, 1014, 1019, 1091
AluI AGCT 8 cut(s) 373, 475, 568, 629, 812, 1014, 1019, 1091
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 3 cut(s) 1134, 1221, 1536
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 3 cut(s) 27, 1067, 1338
AoxI GGCC 4 cut(s) 85, 409, 598, 1486
ApeKI GCWGC 4 cut(s) 373, 455, 884, 1091
ApoI RAATTY 3 cut(s) 295, 1351, 1675
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 1 cut(s) 906
Asp718I GGTACC 1 cut(s) 805
AspS9I GGNCC 2 cut(s) 1161, 1174
AsuC2I CCSGG 2 cut(s) 28, 29
AsuHPI GGTGA 5 cut(s) 395, 789, 989, 1394, 1523
AsuII TTCGAA 1 cut(s) 1150
AvaI CYCGRG 3 cut(s) 27, 1067, 1338
AvaII GGWCC 2 cut(s) 1161, 1174
BalI TGGCCA 1 cut(s) 1488
BanI GGYRCC 1 cut(s) 805
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 2 cut(s) 413, 1020
BbvI GCAGC 4 cut(s) 360, 467, 871, 1078
BccI CCATC 6 cut(s) 143, 449, 777, 802, 902, 1192
BceAI ACGGC 1 cut(s) 1315
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 6 cut(s) 292, 580, 768, 803, 974, 1446
BciVI GTATCC 1 cut(s) 703
BcnI CCSGG 2 cut(s) 28, 29
BfaI CTAG 3 cut(s) 452, 1374, 1626
BfmI CTRYAG 1 cut(s) 1002
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 5 cut(s) 374, 456, 885, 1092, 1238
BlpI GCTNAGC 1 cut(s) 1015
BlsI GCNGC 5 cut(s) 375, 457, 886, 1093, 1239
Bme1390I CCNGG 8 cut(s) 28, 29, 292, 580, 768, 803, 974, 1446
Bme18I GGWCC 2 cut(s) 1161, 1174
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmeT110I CYCGRG 3 cut(s) 27, 1067, 1338
BmgT120I GGNCC 2 cut(s) 1161, 1174
BmiI GGNNCC 5 cut(s) 489, 573, 791, 807, 1176
BmrFI CCNGG 8 cut(s) 28, 29, 292, 580, 768, 803, 974, 1446
BmrI ACTGGG 1 cut(s) 1410
BmsI GCATC 7 cut(s) 54, 169, 196, 669, 934, 1390, 1439
BmuI ACTGGG 1 cut(s) 1410
BoxI GACNNNNGTC 1 cut(s) 258
BpmI CTGGAG 2 cut(s) 314, 750
Bpu10I CCTNAGC 2 cut(s) 413, 1020
Bpu1102I GCTNAGC 1 cut(s) 1015
Bpu14I TTCGAA 1 cut(s) 1150
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 2 cut(s) 28, 29
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 1281
BsaJI CCNNGG 8 cut(s) 27, 256, 290, 801, 973, 1345, 1444, 1445
Bsc4I CCNNNNNNNGG 7 cut(s) 33, 34, 262, 815, 939, 959, 979
Bse1I ACTGG 6 cut(s) 174, 331, 489, 539, 820, 1416
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 6 cut(s) 292, 580, 768, 803, 974, 1446
BseDI CCNNGG 8 cut(s) 27, 256, 290, 801, 973, 1345, 1444, 1445
BseGI GGATG 4 cut(s) 178, 271, 949, 1312
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 7 cut(s) 33, 34, 262, 815, 939, 959, 979
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 5 cut(s) 427, 705, 1011, 1029, 1176
BseNI ACTGG 6 cut(s) 174, 331, 489, 539, 820, 1416
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 4 cut(s) 360, 467, 871, 1078
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 4 cut(s) 87, 411, 600, 1488
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 3 cut(s) 27, 1067, 1338
BsiSI CCGG 2 cut(s) 28, 601
BslFI GGGAC 3 cut(s) 44, 273, 1189
BslI CCNNNNNNNGG 7 cut(s) 33, 34, 262, 815, 939, 959, 979
BsmFI GGGAC 3 cut(s) 44, 273, 1189
BsmI GAATGC 2 cut(s) 99, 1315
BsnI GGCC 4 cut(s) 87, 411, 600, 1488
BsoBI CYCGRG 3 cut(s) 27, 1067, 1338
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 3 cut(s) 109, 987, 1231
Bsp143I GATC 4 cut(s) 1139, 1213, 1513, 1528
Bsp1720I GCTNAGC 1 cut(s) 1015
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 2 cut(s) 132, 1237
BspANI GGCC 4 cut(s) 87, 411, 600, 1488
BspCNI CTCAG 5 cut(s) 426, 706, 1012, 1028, 1177
BspLI GGNNCC 5 cut(s) 489, 573, 791, 807, 1176
BspMAI CTGCAG 1 cut(s) 1006
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 3 cut(s) 1134, 1221, 1536
BspT104I TTCGAA 1 cut(s) 1150
BspT107I GGYRCC 1 cut(s) 805
BspTI CTTAAG 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 357
BsrGI TGTACA 3 cut(s) 109, 987, 1231
BsrI ACTGG 6 cut(s) 174, 331, 489, 539, 820, 1416
BssECI CCNNGG 8 cut(s) 27, 256, 290, 801, 973, 1345, 1444, 1445
BssMI GATC 4 cut(s) 1139, 1213, 1513, 1528
BssNAI GTATAC 1 cut(s) 336
BssNI GRCGYC 1 cut(s) 1281
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 256, 1345
Bst1107I GTATAC 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 6 cut(s) 292, 580, 768, 803, 974, 1446
Bst4CI ACNGT 7 cut(s) 241, 287, 463, 987, 1371, 1535, 1583
Bst6I CTCTTC 2 cut(s) 229, 495
BstACI GRCGYC 1 cut(s) 1281
BstAFI CTTAAG 1 cut(s) 662
BstAUI TGTACA 3 cut(s) 109, 987, 1231
BstBI TTCGAA 1 cut(s) 1150
BstC8I GCNNGC 1 cut(s) 970
BstDEI CTNAG 6 cut(s) 280, 413, 714, 1015, 1020, 1185
BstDSI CCRYGG 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 4 cut(s) 178, 271, 949, 1312
BstKTI GATC 4 cut(s) 1142, 1216, 1516, 1531
BstMBI GATC 4 cut(s) 1139, 1213, 1513, 1528
BstNI CCWGG 6 cut(s) 292, 580, 768, 803, 974, 1446
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 8 cut(s) 26, 27, 290, 578, 766, 801, 972, 1444
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 4 cut(s) 360, 467, 871, 1078
BstX2I RGATCY 1 cut(s) 1139
BstYI RGATCY 1 cut(s) 1139
BstZ17I GTATAC 1 cut(s) 336
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 4 cut(s) 87, 411, 600, 1488
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 4 cut(s) 178, 271, 949, 1312
BtsI GCAGTG 2 cut(s) 417, 1528
BtsIMutI CAGTG 7 cut(s) 167, 246, 417, 1485, 1528, 1588, 1666
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 970
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 2 cut(s) 1161, 1174
Cfr9I CCCGGG 1 cut(s) 27
Csp6I GTAC 8 cut(s) 110, 403, 806, 866, 988, 1232, 1388, 1579
CviAII CATG 2 cut(s) 257, 1158
CviQI GTAC 8 cut(s) 110, 403, 806, 866, 988, 1232, 1388, 1579
DdeI CTNAG 6 cut(s) 280, 413, 714, 1015, 1020, 1185
DpnI GATC 4 cut(s) 1141, 1215, 1515, 1530
DpnII GATC 4 cut(s) 1139, 1213, 1513, 1528
DriI GACNNNNNGTC 1 cut(s) 1180
EaeI YGGCCR 2 cut(s) 598, 1486
Eam1104I CTCTTC 2 cut(s) 229, 495
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 2 cut(s) 229, 495
Eco130I CCWWGG 2 cut(s) 256, 1345
Eco47I GGWCC 2 cut(s) 1161, 1174
Eco57I CTGAAG 2 cut(s) 519, 1461
Eco88I CYCGRG 3 cut(s) 27, 1067, 1338
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 1174
EcoRII CCWGG 6 cut(s) 290, 578, 766, 801, 972, 1444
EcoT14I CCWWGG 2 cut(s) 256, 1345
EcoT22I ATGCAT 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 256, 1345
FaeI CATG 2 cut(s) 260, 1161
FaqI GGGAC 3 cut(s) 44, 273, 1189
FatI CATG 2 cut(s) 256, 1157
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 5 cut(s) 374, 456, 885, 1092, 1238
FokI GGATG 4 cut(s) 185, 278, 956, 1319
Fsp4HI GCNGC 5 cut(s) 374, 456, 885, 1092, 1238
FspBI CTAG 3 cut(s) 452, 1374, 1626
GluI GCNGC 5 cut(s) 374, 456, 885, 1092, 1238
GsuI CTGGAG 2 cut(s) 314, 750
HaeIII GGCC 4 cut(s) 87, 411, 600, 1488
HapII CCGG 2 cut(s) 28, 601
Hin1I GRCGYC 1 cut(s) 1281
Hin1II CATG 2 cut(s) 260, 1161
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 9 cut(s) 164, 619, 674, 698, 819, 1007, 1202, 1341, 1544
HpaII CCGG 2 cut(s) 28, 601
HphI GGTGA 5 cut(s) 395, 789, 989, 1394, 1523
Hpy166II GTNNAC 3 cut(s) 237, 244, 336
Hpy188I TCNGA 9 cut(s) 105, 499, 624, 774, 826, 1054, 1186, 1407, 1543
Hpy188III TCNNGA 7 cut(s) 263, 914, 960, 1243, 1277, 1338, 1374
Hpy8I GTNNAC 3 cut(s) 237, 244, 336
HpyAV CCTTC 5 cut(s) 585, 725, 743, 1174, 1271
HpyCH4III ACNGT 7 cut(s) 241, 287, 463, 987, 1371, 1535, 1583
HpyCH4IV ACGT 1 cut(s) 1281
HpyF3I CTNAG 6 cut(s) 280, 413, 714, 1015, 1020, 1185
HpySE526I ACGT 1 cut(s) 1281
Hsp92I GRCGYC 1 cut(s) 1281
Hsp92II CATG 2 cut(s) 260, 1161
KpnI GGTACC 1 cut(s) 809
Kzo9I GATC 4 cut(s) 1139, 1213, 1513, 1528
LmnI GCTCC 2 cut(s) 274, 795
Lsp1109I GCAGC 4 cut(s) 360, 467, 871, 1078
LweI GCATC 7 cut(s) 54, 169, 196, 669, 934, 1390, 1439
MaeI CTAG 3 cut(s) 452, 1374, 1626
MaeII ACGT 1 cut(s) 1281
MaeIII GTNAC 4 cut(s) 843, 1282, 1585, 1603
MalI GATC 4 cut(s) 1141, 1215, 1515, 1530
MbiI CCGCTC 1 cut(s) 132
MboI GATC 4 cut(s) 1139, 1213, 1513, 1528
MboII GAAGA 8 cut(s) 16, 186, 216, 398, 512, 644, 902, 1409
MflI RGATCY 1 cut(s) 1139
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 1488
MluCI AATT 9 cut(s) 94, 295, 1033, 1116, 1351, 1453, 1466, 1537, 1675
MluNI TGGCCA 1 cut(s) 1488
MlyI GAGTC 7 cut(s) 158, 613, 668, 813, 1211, 1350, 1538
MmeI TCCRAC 1 cut(s) 651
Mox20I TGGCCA 1 cut(s) 1488
Mph1103I ATGCAT 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 906
MscI TGGCCA 1 cut(s) 1488
MseI TTAA 6 cut(s) 663, 849, 998, 1032, 1170, 1452
Msp20I TGGCCA 1 cut(s) 1488
MspA1I CMGCKG 2 cut(s) 1019, 1237
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 2 cut(s) 28, 601
MspR9I CCNGG 8 cut(s) 28, 29, 292, 580, 768, 803, 974, 1446
Mva1269I GAATGC 2 cut(s) 99, 1315
MvaI CCWGG 6 cut(s) 292, 580, 768, 803, 974, 1446
NciI CCSGG 2 cut(s) 28, 29
NcoI CCATGG 1 cut(s) 256
NdeII GATC 4 cut(s) 1139, 1213, 1513, 1528
NlaIII CATG 2 cut(s) 260, 1161
NlaIV GGNNCC 5 cut(s) 489, 573, 791, 807, 1176
NmuCI GTSAC 2 cut(s) 1282, 1585
NsiI ATGCAT 1 cut(s) 211
NspV TTCGAA 1 cut(s) 1150
PaeR7I CTCGAG 2 cut(s) 1067, 1338
PasI CCCWGGG 1 cut(s) 1445
PctI GAATGC 2 cut(s) 99, 1315
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 2 cut(s) 698, 1007
PflMI CCANNNNNTGG 2 cut(s) 262, 815
PkrI GCNGC 5 cut(s) 375, 457, 886, 1093, 1239
PleI GAGTC 7 cut(s) 158, 613, 668, 813, 1210, 1349, 1538
PpsI GAGTC 7 cut(s) 158, 613, 668, 813, 1210, 1349, 1538
PpuMI RGGWCCY 1 cut(s) 1174
PshAI GACNNNNGTC 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 1174
Psp6I CCWGG 6 cut(s) 290, 578, 766, 801, 972, 1444
PspGI CCWGG 6 cut(s) 290, 578, 766, 801, 972, 1444
PspN4I GGNNCC 5 cut(s) 489, 573, 791, 807, 1176
PspPI GGNCC 2 cut(s) 1161, 1174
PspPPI RGGWCCY 1 cut(s) 1174
PspXI VCTCGAGB 1 cut(s) 1067
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 1 cut(s) 1139
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 8 cut(s) 111, 404, 807, 867, 989, 1233, 1389, 1580
RsaNI GTAC 8 cut(s) 110, 403, 806, 866, 988, 1232, 1388, 1579
SaqAI TTAA 6 cut(s) 663, 849, 998, 1032, 1170, 1452
SatI GCNGC 5 cut(s) 374, 456, 885, 1092, 1238
Sau3AI GATC 4 cut(s) 1139, 1213, 1513, 1528
Sau96I GGNCC 2 cut(s) 1161, 1174
SchI GAGTC 7 cut(s) 158, 613, 668, 813, 1211, 1350, 1538
ScrFI CCNGG 8 cut(s) 28, 29, 292, 580, 768, 803, 974, 1446
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 7 cut(s) 54, 169, 196, 669, 934, 1390, 1439
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 2 cut(s) 1067, 1338
SfuI TTCGAA 1 cut(s) 1150
SinI GGWCC 2 cut(s) 1161, 1174
SlaI CTCGAG 2 cut(s) 1067, 1338
SmaI CCCGGG 1 cut(s) 29
SmlI CTYRAG 4 cut(s) 662, 1067, 1241, 1338
SmoI CTYRAG 4 cut(s) 662, 1067, 1241, 1338
Sse9I AATT 9 cut(s) 94, 295, 1033, 1116, 1351, 1453, 1466, 1537, 1675
SsiI CCGC 2 cut(s) 132, 1237
SspI AATATT 1 cut(s) 1561
SspMI CTAG 3 cut(s) 452, 1374, 1626
StyD4I CCNGG 8 cut(s) 26, 27, 290, 578, 766, 801, 972, 1444
StyI CCWWGG 2 cut(s) 256, 1345
TaaI ACNGT 7 cut(s) 241, 287, 463, 987, 1371, 1535, 1583
TaiI ACGT 1 cut(s) 1284
TaqI TCGA 7 cut(s) 48, 677, 1068, 1150, 1216, 1339, 1516
TasI AATT 9 cut(s) 94, 295, 1033, 1116, 1351, 1453, 1466, 1537, 1675
TatI WGTACW 4 cut(s) 109, 987, 1231, 1387
TauI GCSGC 1 cut(s) 1240
TfiI GAWTC 2 cut(s) 698, 1007
Tru1I TTAA 6 cut(s) 663, 849, 998, 1032, 1170, 1452
Tru9I TTAA 6 cut(s) 663, 849, 998, 1032, 1170, 1452
TscAI CASTG 7 cut(s) 174, 246, 424, 1485, 1528, 1588, 1666
TseFI GTSAC 2 cut(s) 1282, 1585
TseI GCWGC 4 cut(s) 373, 455, 884, 1091
Tsp45I GTSAC 2 cut(s) 1282, 1585
TspDTI ATGAA 7 cut(s) 17, 72, 282, 368, 1156, 1410, 1542
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 7 cut(s) 174, 246, 424, 1485, 1528, 1588, 1666
Van91I CCANNNNNTGG 2 cut(s) 262, 815
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 1161, 1174
VspI ATTAAT 1 cut(s) 1452
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 3 cut(s) 295, 1351, 1675
XbaI TCTAGA 1 cut(s) 1373
XhoI CTCGAG 2 cut(s) 1067, 1338
XmaI CCCGGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 452, 1374, 1626
ZraI GACGTC 1 cut(s) 1282
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.