Prupe.2G165900_v2.0.a1

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000242
Physical Location & Seq
Forward (+)
21504579 .. 21505323
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G165900.1

Sequence Viewer

Length: 567 bp
ATGAAGAGCTTTTTCTCAAATGGGTCCATTGTCCTACTAGTCATTCTCCTTTCAACAATTTGCTTGGTGGCTGAAGCTCAGCAATGTCGTCCAAGTGGTAAGATTAGAGGAAGGAAGGCCCCTGCTGGACAATGCAACAAGGAGAATGACTCTGACTGCTGCGTTGCCGGCAAAATGTACCCGACCTACAAATGTTCACCGCCATTGTCCGGGAGCACCAAGGCCTACCTAACTCTCAACAGTTTTGAGAAAAATGGAGACGGAGGTGGTCCATCAGAATGTGACAACCAATACCACAATGACAACACACCGGTTGTGGCATTGTCCACTGGATGGTACAACAATGGAGGAAGGTGCCATAACCACATCAGAATTAATGGTAACGGGCGCAGTGTGGTGGCCATGGTGGTAGATGAGTGTGACTCTACGGAGGGATGTGATGCAGACCATGACTACCAACCTCCTTGTCCTAACAACATTGTTGATGCTTCAAAGGCTGTCTGGAAAGCCTTGGGTGTGCCTGAGGACAACTGGGGTGGCTTAGATATCACATGGTCCGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.18

Weight (kDa)

5.28

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AccB7I CCANNNNNTGG 1 cut(s) 333
AciI CCGC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 179, 338
AfiI CCNNNNNNNGG 2 cut(s) 209, 333
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 54, 492
AhlI ACTAGT 1 cut(s) 37
AluBI AGCT 2 cut(s) 9, 77
AluI AGCT 2 cut(s) 9, 77
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 3 cut(s) 117, 222, 399
ApeKI GCWGC 1 cut(s) 159
AseI ATTAAT 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 310
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 4 cut(s) 24, 118, 269, 555
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 3 cut(s) 24, 269, 555
AxyI CCTNAGG 1 cut(s) 522
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 280, 327
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 252
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 3 cut(s) 24, 269, 555
BmgT120I GGNCC 4 cut(s) 24, 118, 269, 555
BmiI GGNNCC 3 cut(s) 25, 120, 356
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 2 cut(s) 430, 475
BmuI ACTGGG 1 cut(s) 541
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 407, 439
Bpu1102I GCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 219, 402, 510
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 333
Bse118I RCCGGY 2 cut(s) 167, 310
Bse1I ACTGG 2 cut(s) 334, 536
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 219, 402, 510
BseGI GGATG 2 cut(s) 338, 440
BseLI CCNNNNNNNGG 2 cut(s) 209, 333
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 92, 513
BseNI ACTGG 2 cut(s) 334, 536
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 3 cut(s) 119, 224, 401
BshNI GGYRCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 168, 210, 311
BslI CCNNNNNNNGG 2 cut(s) 209, 333
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 3 cut(s) 119, 224, 401
Bsp1286I GDGCHC 1 cut(s) 218
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 1 cut(s) 200
BspANI GGCC 3 cut(s) 119, 224, 401
BspCNI CTCAG 2 cut(s) 91, 514
BspLI GGNNCC 3 cut(s) 25, 120, 356
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 2 cut(s) 167, 310
BsrI ACTGG 2 cut(s) 334, 536
BssAI RCCGGY 2 cut(s) 167, 310
BssECI CCNNGG 3 cut(s) 219, 402, 510
BssT1I CCWWGG 3 cut(s) 219, 402, 510
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 4 cut(s) 78, 522, 541, 564
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 338, 440
BstHHI GCGC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 168, 494
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 3 cut(s) 119, 224, 401
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 338, 440
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 327, 397
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 2 cut(s) 167, 310
Cfr13I GGNCC 4 cut(s) 24, 118, 269, 555
Csp6I GTAC 2 cut(s) 178, 337
CspAI ACCGGT 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 3 cut(s) 403, 449, 552
CviJI RGCY 9 cut(s) 9, 71, 77, 119, 224, 401, 497, 509, 540
CviKI_1 RGCY 9 cut(s) 9, 71, 77, 119, 224, 401, 497, 509, 540
CviQI GTAC 2 cut(s) 178, 337
DdeI CTNAG 4 cut(s) 78, 522, 541, 564
EaeI YGGCCR 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 219, 402, 510
Eco147I AGGCCT 1 cut(s) 224
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 24, 269, 555
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 118
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 3 cut(s) 219, 402, 510
ErhI CCWWGG 3 cut(s) 219, 402, 510
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 406, 452, 555
FaiI YATR 4 cut(s) 360, 404, 450, 553
FatI CATG 3 cut(s) 402, 448, 551
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 345, 447
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 3 cut(s) 119, 224, 401
HapII CCGG 3 cut(s) 168, 210, 311
HhaI GCGC 1 cut(s) 390
Hin1II CATG 3 cut(s) 406, 452, 555
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 149, 422
HpaII CCGG 3 cut(s) 168, 210, 311
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 2 cut(s) 197, 327
Hpy188I TCNGA 4 cut(s) 154, 277, 371, 559
Hpy188III TCNNGA 1 cut(s) 502
Hpy8I GTNNAC 2 cut(s) 197, 327
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 105, 109, 345
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 135, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 494
HpyF3I CTNAG 4 cut(s) 78, 522, 541, 564
Hsp92II CATG 3 cut(s) 406, 452, 555
HspAI GCGC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 9 cut(s) 111, 135, 181, 223, 315, 324, 487, 517, 534
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 430, 475
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 281, 380, 419
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 57, 372
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 2 cut(s) 143, 416
MnlI CCTC 6 cut(s) 101, 257, 341, 424, 471, 517
Mox20I TGGCCA 1 cut(s) 401
MroNI GCCGGC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 3 cut(s) 168, 210, 311
MspR9I CCNGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 168, 494
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 3 cut(s) 406, 452, 555
NlaIV GGNNCC 3 cut(s) 25, 120, 356
NmuCI GTSAC 2 cut(s) 281, 419
PceI AGGCCT 1 cut(s) 224
PdiI GCCGGC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 2 cut(s) 143, 416
PpsI GAGTC 2 cut(s) 143, 416
PshBI ATTAAT 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 25, 120, 356
PspPI GGNCC 4 cut(s) 24, 118, 269, 555
RsaI GTAC 2 cut(s) 179, 338
RsaNI GTAC 2 cut(s) 178, 337
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 160
Sau96I GGNCC 4 cut(s) 24, 118, 269, 555
SchI GAGTC 2 cut(s) 143, 416
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 218
SetI ASST 7 cut(s) 11, 79, 188, 231, 268, 356, 463
SfaNI GCATC 2 cut(s) 430, 475
SinI GGWCC 3 cut(s) 24, 269, 555
SmiMI CAYNNNNRTG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 2 cut(s) 57, 372
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 3 cut(s) 219, 402, 510
TaaI ACNGT 1 cut(s) 242
TasI AATT 2 cut(s) 57, 372
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 334, 397
TseFI GTSAC 2 cut(s) 281, 419
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 2 cut(s) 281, 419
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 276, 443
TspRI CASTG 2 cut(s) 334, 397
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 3 cut(s) 24, 269, 555
VspI ATTAAT 1 cut(s) 375
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.