RLG00000028219

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000242
Physical Location & Seq
Reverse (-)
20269374 .. 20270335
962 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028219

Sequence Viewer

Length: 378 bp
ATGGTTTCAGTCTTTATCAAACAACAATTAATTTCCTTCTTGCCAGCTCCAAGCTCTCAGCTACCTGTAAAAGGAAGAGTATGTCTAAGGTATAGCAATAAGCAAGAGAAAAGAGCGACTCCAATCGTGGCACTCTCCACTGGATGGTACAATAATGGAGGAAGGTGCCACAACAACATTAAAATCACTGCTAATGGTCGCAGTGTGGTGGCCATGGTGGTGGATGAATGTGACTCTACTAGAGGATGTGATGCAGACCATGACTACCTCCCTCCTTGTGCTAACAACATTATTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTTTAAAGAAAACTGGGGCGGCTTAGATATCACATGGAACGACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.79

Weight (kDa)

8.32

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 40 - 125 2.8e-27 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 71, 144
AluBI AGCT 3 cut(s) 47, 54, 61
AluI AGCT 3 cut(s) 47, 54, 61
AoxI GGCC 1 cut(s) 210
AseI ATTAAT 1 cut(s) 29
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 165
BccI CCATC 1 cut(s) 138
BfaI CTAG 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 352
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 213, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 144
Bse1I ACTGG 2 cut(s) 145, 347
BseDI CCNNGG 2 cut(s) 213, 303
BseGI GGATG 3 cut(s) 149, 229, 251
BseLI CCNNNNNNNGG 2 cut(s) 71, 144
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 145, 347
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 71, 144
BsnI GGCC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 145, 347
BssECI CCNNGG 2 cut(s) 213, 303
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 2 cut(s) 213, 303
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 45, 323
BstDEI CTNAG 3 cut(s) 57, 86, 352
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 149, 229, 251
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 149, 229, 251
BtsI GCAGTG 2 cut(s) 186, 208
BtsIMutI CAGTG 3 cut(s) 138, 186, 208
Cac8I GCNNGC 2 cut(s) 45, 323
Csp6I GTAC 1 cut(s) 148
CviAII CATG 4 cut(s) 214, 260, 326, 363
CviJI RGCY 7 cut(s) 47, 54, 61, 212, 308, 321, 351
CviKI_1 RGCY 7 cut(s) 47, 54, 61, 212, 308, 321, 351
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 3 cut(s) 57, 86, 352
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 213, 303
Eco32I GATATC 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 213, 303
ErhI CCWWGG 2 cut(s) 213, 303
FaeI CATG 4 cut(s) 217, 263, 329, 366
FaiI YATR 6 cut(s) 82, 93, 215, 261, 327, 364
FatI CATG 4 cut(s) 213, 259, 325, 362
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 3 cut(s) 156, 236, 258
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 349
HaeIII GGCC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 217, 263, 329, 366
HinfI GANTC 2 cut(s) 118, 233
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 46, 156, 311
HpyCH4V TGCA 2 cut(s) 254, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 57, 86, 352
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 217, 263, 329, 366
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 57, 78, 126, 328
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 230
MboII GAAGA 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 26, 30
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 2 cut(s) 112, 227
MnlI CCTC 5 cut(s) 152, 236, 278, 282, 310
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 29, 180, 333
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 213
NlaIII CATG 4 cut(s) 217, 263, 329, 366
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 2 cut(s) 112, 227
PpsI GAGTC 2 cut(s) 112, 227
PshBI ATTAAT 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 167
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 29, 180, 333
SatI GCNGC 1 cut(s) 349
SchI GAGTC 2 cut(s) 112, 227
SetI ASST 7 cut(s) 49, 56, 63, 67, 92, 167, 270
SfaNI GCATC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 2 cut(s) 26, 30
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 2 cut(s) 213, 303
TasI AATT 2 cut(s) 26, 30
TauI GCSGC 1 cut(s) 351
Tru1I TTAA 3 cut(s) 29, 180, 333
Tru9I TTAA 3 cut(s) 29, 180, 333
TscAI CASTG 3 cut(s) 145, 193, 208
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 3 cut(s) 145, 193, 208
Van91I CCANNNNNTGG 1 cut(s) 144
VspI ATTAAT 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 69
XceI RCATGY 1 cut(s) 329
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.