Rh1DG147000

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000242
Physical Location & Seq
Reverse (-)
30813862 .. 30814645
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG147000.1

Sequence Viewer

Length: 561 bp
ATGACTAGCTTATTCTCAAAAGGGTCTATTCTAGTCATTCTCCTTTTAGCAATTTGCTTGGTTAGTGCAGCTCAGCAATGTCGCCCAAGCGGAAGAATCAGAGGAAGGAAACCACCACCTGGACAATGTAACCAGGAGGATGACTCTGACTGCTGTAAAGCTGGAAAAATGTACCCAACCTACACTTGCTCGCCACCCATGTCTGGTAACACCCAGGCATACCTCACTCTCAACAGCTTTGAGGCAGGTGGTGACGGAGGAGGCCCATCCGAATGTGACGGCAAGTATCACAATGACAATTCTCCAGTTGTTGCATTATCCACCGGATGGTACAACGGTGGATCAAGGTGCCTTAACAACATCAGCATTAGTGGTAATGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATGCTGACCATGATTATCAGCCTCCTTGTCCCAACAATATTGTTGATGCCTCCAAGGCTGCCTGGAAAGCCTTGGGTGTATCTAAGGACAACTGGGGCGGCTTGGATATCACATGGTCCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.61

Weight (kDa)

4.76

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 15 - 186 2.5e-66 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 2 cut(s) 119, 327
AciI CCGC 2 cut(s) 90, 531
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 3 cut(s) 119, 203, 327
AjnI CCWGG 4 cut(s) 118, 132, 213, 494
AluBI AGCT 4 cut(s) 9, 71, 161, 237
AluI AGCT 4 cut(s) 9, 71, 161, 237
AlwI GGATC 1 cut(s) 349
AoxI GGCC 2 cut(s) 262, 393
ApeKI GCWGC 2 cut(s) 68, 491
AspS9I GGNCC 2 cut(s) 263, 549
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 80, 478
BccI CCATC 2 cut(s) 274, 321
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 4 cut(s) 120, 134, 215, 496
BfaI CTAG 2 cut(s) 6, 32
BfuAI ACCTGC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 3 cut(s) 69, 492, 532
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 3 cut(s) 70, 493, 533
Bme1390I CCNGG 4 cut(s) 120, 134, 215, 496
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 263, 549
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 4 cut(s) 120, 134, 215, 496
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 3 cut(s) 424, 469, 544
BmuI ACTGGG 1 cut(s) 535
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 401, 433
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 213, 396, 486, 504
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 203, 327
Bse1I ACTGG 2 cut(s) 305, 530
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 4 cut(s) 120, 134, 215, 496
BseDI CCNNGG 4 cut(s) 213, 396, 486, 504
BseGI GGATG 5 cut(s) 145, 266, 332, 412, 434
BseLI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 86, 414
BseNI ACTGG 2 cut(s) 305, 530
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 80, 478
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 2 cut(s) 264, 395
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 264, 395
Bsp143I GATC 1 cut(s) 341
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 90, 531
BspANI GGCC 2 cut(s) 264, 395
BspCNI CTCAG 2 cut(s) 85, 415
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 305, 530
BssECI CCNNGG 4 cut(s) 213, 396, 486, 504
BssMI GATC 1 cut(s) 341
BssT1I CCWWGG 3 cut(s) 396, 486, 504
Bst2UI CCWGG 4 cut(s) 120, 134, 215, 496
Bst4CI ACNGT 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 4 cut(s) 72, 423, 516, 558
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 5 cut(s) 145, 266, 332, 412, 434
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 2 cut(s) 488, 500
BstNI CCWGG 4 cut(s) 120, 134, 215, 496
BstSCI CCNGG 4 cut(s) 118, 132, 213, 494
BstV1I GCAGC 2 cut(s) 80, 478
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 2 cut(s) 264, 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 5 cut(s) 145, 266, 332, 412, 434
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 263, 549
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 4 cut(s) 199, 397, 443, 546
CviQI GTAC 2 cut(s) 172, 331
DdeI CTNAG 4 cut(s) 72, 423, 516, 558
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 3 cut(s) 396, 486, 504
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 549
EcoRII CCWGG 4 cut(s) 118, 132, 213, 494
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 3 cut(s) 396, 486, 504
ErhI CCWWGG 3 cut(s) 396, 486, 504
FaeI CATG 4 cut(s) 202, 400, 446, 549
FaiI YATR 5 cut(s) 200, 220, 398, 444, 547
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 198, 396, 442, 545
Fnu4HI GCNGC 3 cut(s) 69, 492, 532
FokI GGATG 5 cut(s) 152, 253, 339, 419, 441
Fsp4HI GCNGC 3 cut(s) 69, 492, 532
FspBI CTAG 2 cut(s) 6, 32
GluI GCNGC 3 cut(s) 69, 492, 532
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 264, 395
HapII CCGG 1 cut(s) 324
Hin1II CATG 4 cut(s) 202, 400, 446, 549
HinfI GANTC 3 cut(s) 96, 143, 416
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 4 cut(s) 101, 148, 271, 553
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 68, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 500
HpyF3I CTNAG 4 cut(s) 72, 423, 516, 558
Hsp92II CATG 4 cut(s) 202, 400, 446, 549
Kzo9I GATC 1 cut(s) 341
Lsp1109I GCAGC 2 cut(s) 80, 478
LweI GCATC 3 cut(s) 424, 469, 544
MaeI CTAG 2 cut(s) 6, 32
MaeIII GTNAC 5 cut(s) 128, 206, 251, 275, 413
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 51, 298
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 137, 410
MnlI CCTC 9 cut(s) 95, 130, 233, 235, 251, 254, 418, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 271, 401
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 4 cut(s) 120, 134, 215, 496
MvaI CCWGG 4 cut(s) 120, 134, 215, 496
MwoI GCNNNNNNNGC 2 cut(s) 488, 500
NcoI CCATGG 1 cut(s) 396
NdeII GATC 1 cut(s) 341
NlaIII CATG 4 cut(s) 202, 400, 446, 549
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 3 cut(s) 251, 275, 413
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 2 cut(s) 119, 327
PkrI GCNGC 3 cut(s) 70, 493, 533
PleI GAGTC 2 cut(s) 137, 410
PpsI GAGTC 2 cut(s) 137, 410
Psp6I CCWGG 4 cut(s) 118, 132, 213, 494
PspGI CCWGG 4 cut(s) 118, 132, 213, 494
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 2 cut(s) 263, 549
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 2 cut(s) 271, 401
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 3 cut(s) 69, 492, 532
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 2 cut(s) 263, 549
SchI GAGTC 2 cut(s) 137, 410
ScrFI CCNGG 4 cut(s) 120, 134, 215, 496
SetI ASST 9 cut(s) 11, 73, 121, 163, 182, 225, 239, 250, 350
SfaNI GCATC 3 cut(s) 424, 469, 544
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 271, 401
Sse9I AATT 2 cut(s) 51, 298
SsiI CCGC 2 cut(s) 90, 531
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 6, 32
StyD4I CCNGG 4 cut(s) 118, 132, 213, 494
StyI CCWWGG 3 cut(s) 396, 486, 504
TaaI ACNGT 1 cut(s) 338
TasI AATT 2 cut(s) 51, 298
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 3 cut(s) 251, 275, 413
TseI GCWGC 2 cut(s) 68, 491
Tsp45I GTSAC 3 cut(s) 251, 275, 413
TspGWI ACGGA 1 cut(s) 270
Van91I CCANNNNNTGG 2 cut(s) 119, 327
VpaK11BI GGWCC 1 cut(s) 549
XspI CTAG 2 cut(s) 6, 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.