Rh1AG211400

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000242
Physical Location & Seq
Forward (+)
40421005 .. 40421475
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG211400.1

Sequence Viewer

Length: 471 bp
ATGGTCAGAGGAAAGAAGGCTCCTCCTGGACCATGCGACCAGGGTGGTGACACCGACTGCTGTAAAGCAGGAAAAATGTACACAACCTATCATTGCTCACCACCGGTGGCCAAACACACCAAGGGCTATCTTACTCTGGACAGGTTTGAGAACGGTATTGATGATGGAGATACTCCATCGACATGCGACAATCGATATCATTCCGACGAGACACTAGTCGTGGCGTTATCCACCGGGTGGTTTAACGATGGAGGAATGTGTCTAAAGAACATCACGATTAGCGGTAATGGGCGCAGTGTGGTGGCCTTGGTGGTGGATGAGTGTGACTCAACTATGGGATGTGACGTGGACAATGACTACCAGCCTCCTTGTGCTAATAATGTTGTTGATGCCTCGAAGGCTGTCTGGGAAGCATTAGGCGTGCCTCATGGCGATTGGGGTGGTTTAGACATTACATGGTCGAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.65

Weight (kDa)

4.55

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 10 - 155 7.9e-48 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06580 FvH4_7g13910 FvH4_7g13921 FvH4_7g13931 FvH4_7g13940 FvH4_7g13941 FvH4_7g13950 FvH4_7g13963 FvH4_7g13964 FvH4_7g13965 FvH4_7g19470
malus_domestica MD01G1055500.v1.1 MD01G1055800.v1.1 MD01G1055900.v1.1 MD01G1056000.v1.1 MD01G1056100.v1.1 MD07G1111100.v1.1 MD07G1139700.v1.1 MD07G1139800.v1.1
prunus_persica Prupe.2G165600_v2.0.a1 Prupe.2G165700_v2.0.a1 Prupe.2G165800_v2.0.a1 Prupe.2G165900_v2.0.a1 Prupe.2G166000_v2.0.a1 Prupe.2G166700_v2.0.a1 Prupe.2G166800_v2.0.a1
pyrus_communis pycom01g08120 pycom07g09590 pycom07g13780
rosa_chinensis RchiOBHm_Chr1g0333851 RchiOBHm_Chr1g0333861 RchiOBHm_Chr1g0334061 RchiOBHm_Chr1g0335111 RchiOBHm_Chr1g0335191 RchiOBHm_Chr1g0340801 RchiOBHm_Chr1g0348301 RchiOBHm_Chr1g0353601 RchiOBHm_Chr1g0354571 RchiOBHm_Chr1g0354621 RchiOBHm_Chr7g0221941 RchiOBHm_Chr7g0232861 RchiOBHm_Chr7g0232891 RchiOBHm_Chr7g0232951 RchiOBHm_Chr7g0232981 RchiOBHm_Chr7g0233011
rosa_laevigata RLG00000001309 RLG00000001311 RLG00000001312 RLG00000028195 RLG00000028197 RLG00000028198 RLG00000028207 RLG00000028217 RLG00000028219 RLG00000028668 RLG00000029045 RLG00000029479 RLG00000029482
rosa_multiflora Rmu_co7977860.1_g000001 Rmu_co8392301.1_g000001 Rmu_co8424661.1_g000001 Rmu_sc0000026.1_g000015 Rmu_sc0000942.1_g000020 Rmu_sc0001211.1_g000118 Rmu_sc0002200.1_g000057 Rmu_sc0002722.1_g000008 Rmu_sc0002737.1_g000002 Rmu_sc0003690.1_g000020 Rmu_sc0003690.1_g000021 Rmu_sc0005065.1_g000045 Rmu_sc0005947.1_g000037 Rmu_sc0006632.1_g000003 Rmu_sc0006746.1_g000008 Rmu_sc0006746.1_g000018 Rmu_sc0009527.1_g000002 Rmu_sc0011926.1_g000002 Rmu_sc0015525.1_g000007 Rmu_sc0020815.1_g000003 Rmu_sc0022127.1_g000001 Rmu_sc0026161.1_g000001 Rmu_sc0029005.1_g000001 Rmu_ssc0000018.1_g000018 Rmu_ssc0000018.1_g000022
rosa_roxburghii Rroxscaffold_3G00227810 Rroxscaffold_3G00227830 Rroxscaffold_3G00227840 Rroxscaffold_4G00300900 Rroxscaffold_4G00300910 Rroxscaffold_4G00300920 Rroxscaffold_4G00300990 Rroxscaffold_4G00307030 Rroxscaffold_4G00316180
rosa_rugosa Rorug01G0112300 Rorug01G0112700 Rorug01G0120900 Rorug01G0161200.1 Rorug01G0236500 Rorug01G0243300 Rorug01G0243400 Rorug05G0135300 Rorug07G0276400 Rorug07G0276400 Rorug07G0276500 Rorug07G0276600 Rorug07G0277700
rosa_samantha Rh1AG134800 Rh1AG136600 Rh1AG142000 Rh1AG176400 Rh1AG211400 Rh1AG248900 Rh1AG254300 Rh1AG254600 Rh1DG141700 Rh1DG146700 Rh1DG147000 Rh1DG176000 Rh1DG207500 Rh1DG245700 Rh1DG251600 Rh1DG252200 Rh1DG253000 Rh1DG253200 Rh7CG450500 Rh7CG450900 Rh7CG452200 Rh7DG421100 Rh7DG421200
rosa_wichuraiana Rw0G004720 Rw0G013980 Rw1G011770 Rw1G022200 Rw1G022240 Rw1G022250 Rw1G022270 Rw7G035640 Rw7G035650 Rw7G035680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AciI CCGC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 237
AgeI ACCGGT 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 214
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 2 cut(s) 25, 39
Alw26I GTCTC 1 cut(s) 203
AoxI GGCC 2 cut(s) 108, 303
AsiGI ACCGGT 1 cut(s) 103
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 59, 90
AvaII GGWCC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 110
BccI CCATC 3 cut(s) 158, 184, 242
BciT130I CCWGG 2 cut(s) 27, 41
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 398
Bme1390I CCNGG 3 cut(s) 27, 41, 235
Bme18I GGWCC 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 3 cut(s) 27, 41, 235
BmsI GCATC 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 40, 120, 306
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 27, 41
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 40, 120, 306
BseGI GGATG 2 cut(s) 322, 344
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 12
BshFI GGCC 2 cut(s) 110, 305
BshTI ACCGGT 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 193
BsiSI CCGG 2 cut(s) 104, 234
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 2 cut(s) 110, 305
Bsp1407I TGTACA 1 cut(s) 78
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 110, 305
BspDI ATCGAT 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 40, 120, 306
BssT1I CCWWGG 2 cut(s) 120, 306
Bst2UI CCWGG 2 cut(s) 27, 41
Bst4CI ACNGT 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 322, 344
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 2 cut(s) 27, 41
BstNSI RCATGY 1 cut(s) 186
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 25, 39, 233
Bsu15I ATCGAT 1 cut(s) 193
BsuRI GGCC 2 cut(s) 110, 305
BsuTUI ATCGAT 1 cut(s) 193
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 322, 344
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 422
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 4 cut(s) 33, 183, 428, 456
CviJI RGCY 6 cut(s) 20, 110, 126, 305, 364, 401
CviKI_1 RGCY 6 cut(s) 20, 110, 126, 305, 364, 401
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 120, 306
Eco32I GATATC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 25, 39
EcoRV GATATC 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 120, 306
ErhI CCWWGG 2 cut(s) 120, 306
FaeI CATG 4 cut(s) 36, 186, 431, 459
FaiI YATR 5 cut(s) 34, 184, 335, 429, 457
FatI CATG 4 cut(s) 32, 182, 427, 455
FokI GGATG 2 cut(s) 329, 351
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 293
HaeIII GGCC 2 cut(s) 110, 305
HapII CCGG 2 cut(s) 104, 234
HhaI GCGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 36, 186, 431, 459
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 104, 234
HphI GGTGA 2 cut(s) 59, 90
Hpy166II GTNNAC 2 cut(s) 81, 349
Hpy188I TCNGA 2 cut(s) 8, 205
Hpy188III TCNNGA 2 cut(s) 137, 274
Hpy8I GTNNAC 2 cut(s) 81, 349
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 10, 391
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 4 cut(s) 36, 186, 431, 459
HspAI GCGC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 25
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 3 cut(s) 47, 323, 341
MlsI TGGCCA 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 5 cut(s) 33, 245, 375, 403, 435
Mox20I TGGCCA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 110
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 181
Msp20I TGGCCA 1 cut(s) 110
MspI CCGG 2 cut(s) 104, 234
MspR9I CCNGG 3 cut(s) 27, 41, 235
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 2 cut(s) 27, 41
MwoI GCNNNNNNNGC 1 cut(s) 398
NciI CCSGG 1 cut(s) 235
NlaIII CATG 4 cut(s) 36, 186, 431, 459
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 3 cut(s) 47, 323, 341
NspI RCATGY 1 cut(s) 186
PctI GAATGC 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 103
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PshAI GACNNNNGTC 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 25, 39
PspGI CCWGG 2 cut(s) 25, 39
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 27, 41, 235
SetI ASST 3 cut(s) 89, 146, 348
SfaNI GCATC 1 cut(s) 379
SgrAI CRCCGGYG 1 cut(s) 103
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 181
SpeI ACTAGT 1 cut(s) 214
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 25, 39, 233
StyI CCWWGG 2 cut(s) 120, 306
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 348
TaqI TCGA 4 cut(s) 179, 193, 395, 461
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 3 cut(s) 47, 323, 341
Tsp45I GTSAC 3 cut(s) 47, 323, 341
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 29
XceI RCATGY 1 cut(s) 186
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.